Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29908 * 125.35804 * 2 1 4 4 C 1.36125 * 108.49182 * 179.97438 * 3 2 1 5 5 C 1.47287 * 126.46214 * 179.97438 * 4 3 2 6 6 O 1.21631 * 119.99987 * 174.73501 * 5 4 3 7 7 N 1.34779 * 119.99851 * 354.46797 * 5 4 3 8 8 C 1.46495 * 120.00109 * 354.91661 * 7 5 4 9 9 C 1.50705 * 109.47078 * 85.19739 * 8 7 5 10 10 H 1.08002 * 119.99781 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00201 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99810 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99785 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47248 * 59.99833 * 13 11 9 15 15 H 1.48501 * 109.46930 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47365 * 299.99593 * 13 11 9 17 17 C 1.46503 * 119.99665 * 174.92540 * 7 5 4 18 18 C 1.52998 * 109.47036 * 91.21547 * 17 7 5 19 19 C 1.47205 * 109.46855 * 179.97438 * 18 17 7 20 20 N 8.95750 * 140.52378 * 347.92694 * 2 1 3 21 21 C 1.36284 * 107.07001 * 0.26450 * 4 3 2 22 22 Br 1.89099 * 126.53905 * 179.69876 * 21 4 3 23 23 O 1.34102 * 125.35767 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47335 * 90.00213 * 1 2 3 25 25 H 1.09004 * 109.47176 * 209.99735 * 1 2 3 26 26 H 1.09001 * 109.47070 * 329.99422 * 1 2 3 27 27 H 1.09005 * 109.47490 * 205.19534 * 8 7 5 28 28 H 1.08998 * 109.47238 * 325.19710 * 8 7 5 29 29 H 0.97003 * 119.99556 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.46701 * 211.21455 * 17 7 5 31 31 H 1.08996 * 109.46922 * 331.21345 * 17 7 5 32 32 H 1.08997 * 109.47301 * 299.99541 * 18 17 7 33 33 H 1.09000 * 109.47212 * 59.99648 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2587 1.0595 0.0000 4 6 3.5614 0.6645 0.0006 5 6 4.7427 1.5442 0.0003 6 8 5.8569 1.0661 0.0975 7 7 4.5894 2.8784 -0.1132 8 6 3.2592 3.4455 -0.3479 9 6 2.5504 3.6257 0.9698 10 1 3.0415 3.3455 1.8899 11 6 1.2745 4.1475 1.0006 12 7 0.6763 4.4883 -0.1199 13 14 0.3963 4.3715 2.6340 14 1 1.1811 5.2917 3.4959 15 1 -0.9522 4.9463 2.3961 16 1 0.2620 3.0554 3.3084 17 6 5.7530 3.7615 -0.0021 18 6 6.3496 3.9962 -1.3913 19 6 7.5185 4.8840 -1.2796 20 7 8.4211 5.5688 -1.1911 21 6 3.5662 -0.6983 -0.0051 22 35 5.0895 -1.8187 -0.0151 23 8 2.2829 -1.0937 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 3.3582 4.4119 -0.8423 28 1 2.6831 2.7708 -0.9810 29 1 -0.2215 4.8550 -0.0982 30 1 5.4457 4.7150 0.4272 31 1 6.5010 3.2976 0.6409 32 1 6.6569 3.0426 -1.8206 33 1 5.6016 4.4600 -2.0343 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191630515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = 38.664108 kcal Electronic energy + Delta-G solvation = -21690.143675 eV Core-core repulsion = 18186.381208 eV Total energy + Delta-G solvation = -3503.762467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.05226 -39.19189 -36.65643 -35.29724 -34.52985 -32.74809 -32.49348 -31.20137 -30.64561 -27.26556 -26.94336 -24.81410 -23.18411 -22.29820 -21.04998 -18.97882 -17.52872 -17.01772 -16.78776 -16.29683 -15.96750 -15.50418 -14.68948 -14.49078 -14.27708 -13.86470 -13.60642 -13.35971 -13.01190 -12.91525 -12.40125 -12.29296 -12.25224 -12.11292 -11.73912 -11.60042 -11.12908 -10.97122 -10.91263 -10.75483 -10.66879 -10.49921 -10.20248 -9.78594 -9.63313 -9.24999 -8.51793 -8.39847 -7.85942 -6.04100 -4.03467 0.87245 1.18402 2.51351 2.86581 2.95632 3.26930 3.32081 3.34200 3.35832 3.54263 3.78485 4.27238 4.38887 4.45720 5.06136 5.28315 5.31949 5.33790 5.42862 5.47589 5.61299 5.68083 5.83276 5.95484 6.07391 6.23194 6.42470 6.63066 7.35139 7.52956 7.71607 7.85013 7.90984 8.14452 8.20938 8.70518 8.95339 9.57421 11.04632 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.006736 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.630863 B = 4155.696404 C = 7014.760522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.190 3.810 3 N -0.375 5.375 4 C 0.006 3.994 5 C 0.592 3.408 6 O -0.546 6.546 7 N -0.577 5.577 8 C 0.234 3.766 9 C -0.500 4.500 10 H 0.051 0.949 11 C 0.073 3.927 12 N -0.891 5.891 13 Si 0.883 3.117 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.279 1.279 17 C 0.127 3.873 18 C -0.046 4.046 19 C 0.222 3.778 20 N -0.451 5.451 21 C -0.022 4.022 22 Br 0.083 6.917 23 O -0.193 6.193 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.260 0.740 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -12.073 -2.589 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.019 4.019 3 N -0.103 5.103 4 C -0.118 4.118 5 C 0.378 3.622 6 O -0.425 6.425 7 N -0.307 5.307 8 C 0.115 3.885 9 C -0.539 4.539 10 H 0.069 0.931 11 C -0.129 4.129 12 N -0.531 5.531 13 Si 0.711 3.289 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.205 1.205 17 C 0.002 3.998 18 C -0.087 4.087 19 C -0.096 4.096 20 N -0.128 5.128 21 C -0.157 4.157 22 Br 0.166 6.834 23 O -0.083 6.083 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.358 -10.987 -2.486 11.755 hybrid contribution -1.240 -0.577 0.977 1.681 sum 2.118 -11.564 -1.510 11.853 Atomic orbital electron populations 1.20291 0.80913 1.05138 1.04740 1.26789 0.96792 0.78068 1.00237 1.71969 0.98970 1.26071 1.13305 1.21698 0.93705 0.89983 1.06451 1.16718 0.85734 0.82275 0.77441 1.90795 1.24119 1.75382 1.52224 1.48119 1.10627 1.04266 1.67653 1.19827 0.75833 0.94706 0.98100 1.21125 0.99718 1.40827 0.92237 0.93062 1.24686 0.96879 0.95617 0.95689 1.69900 1.14117 1.43509 1.25568 0.86821 0.78944 0.78361 0.84761 1.20516 1.21336 1.20501 1.21185 0.88730 0.95897 0.93983 1.19784 0.90037 0.97207 1.01689 1.29120 0.94142 0.93421 0.92925 1.81197 1.11868 1.10913 1.08840 1.24883 0.84202 0.94295 1.12283 1.96849 1.24608 1.64473 1.97484 1.84340 1.14796 1.38701 1.70417 0.88858 0.89890 0.87273 0.94878 0.91820 0.92989 0.89051 0.89819 0.87132 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.66 10.51 36.00 0.38 -0.28 16 2 C 0.19 3.20 8.30 -13.10 -0.11 3.10 16 3 N -0.37 -7.56 6.89 -7.63 -0.05 -7.61 16 4 C 0.01 0.13 6.56 -82.99 -0.54 -0.42 16 5 C 0.59 11.62 7.61 -12.58 -0.10 11.53 16 6 O -0.55 -10.72 14.94 5.25 0.08 -10.64 16 7 N -0.58 -10.97 2.47 -176.38 -0.44 -11.40 16 8 C 0.23 5.13 4.75 -5.19 -0.02 5.10 16 9 C -0.50 -12.24 7.76 -34.44 -0.27 -12.51 16 10 H 0.05 1.32 7.81 -52.49 -0.41 0.91 16 11 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -23.02 13.29 55.43 0.74 -22.28 16 13 Si 0.88 19.88 29.54 -169.99 -5.02 14.86 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.13 1.98 5.32 -4.04 -0.02 1.96 16 18 C -0.05 -0.58 6.03 -29.52 -0.18 -0.76 16 19 C 0.22 3.14 15.44 -20.74 -0.32 2.82 16 20 N -0.45 -7.43 18.54 42.17 0.78 -6.65 16 21 C -0.02 -0.39 7.92 30.03 0.24 -0.15 16 22 Br 0.08 1.21 32.42 -68.01 -2.21 -1.00 16 23 O -0.19 -3.18 10.73 6.30 0.07 -3.12 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.03 0.74 8.04 -51.93 -0.42 0.33 16 28 H 0.06 1.50 5.83 -51.93 -0.30 1.19 16 29 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 30 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 31 H 0.08 1.31 7.46 -51.93 -0.39 0.92 16 32 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -29.03 322.03 -5.42 -34.45 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -3.19 Total: -3.57 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -1.04 Total: 12.12 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 1.03 Total: -47.95 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.15 Total: -13.75 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 35 Polarization: 1.21 SS G_CDS: -2.21 Total: -1.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.03 -5.42 -34.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191630515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.114 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds