Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29908 * 125.35804 * 2 1 4 4 C 1.36125 * 108.49182 * 179.97438 * 3 2 1 5 5 C 1.47287 * 126.46214 * 179.97438 * 4 3 2 6 6 O 1.21631 * 119.99987 * 174.73501 * 5 4 3 7 7 N 1.34779 * 119.99851 * 354.46797 * 5 4 3 8 8 C 1.46495 * 120.00109 * 354.91661 * 7 5 4 9 9 C 1.50705 * 109.47078 * 85.19739 * 8 7 5 10 10 H 1.08002 * 119.99781 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00201 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99810 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99785 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47248 * 59.99833 * 13 11 9 15 15 H 1.48501 * 109.46930 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47365 * 299.99593 * 13 11 9 17 17 C 1.46503 * 119.99665 * 174.92540 * 7 5 4 18 18 C 1.52998 * 109.47036 * 91.21547 * 17 7 5 19 19 C 1.47205 * 109.46855 * 179.97438 * 18 17 7 20 20 N 8.95750 * 140.52378 * 347.92694 * 2 1 3 21 21 C 1.36284 * 107.07001 * 0.26450 * 4 3 2 22 22 Br 1.89099 * 126.53905 * 179.69876 * 21 4 3 23 23 O 1.34102 * 125.35767 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47335 * 90.00213 * 1 2 3 25 25 H 1.09004 * 109.47176 * 209.99735 * 1 2 3 26 26 H 1.09001 * 109.47070 * 329.99422 * 1 2 3 27 27 H 1.09005 * 109.47490 * 205.19534 * 8 7 5 28 28 H 1.08998 * 109.47238 * 325.19710 * 8 7 5 29 29 H 0.97003 * 119.99556 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.46701 * 211.21455 * 17 7 5 31 31 H 1.08996 * 109.46922 * 331.21345 * 17 7 5 32 32 H 1.08997 * 109.47301 * 299.99541 * 18 17 7 33 33 H 1.09000 * 109.47212 * 59.99648 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2587 1.0595 0.0000 4 6 3.5614 0.6645 0.0006 5 6 4.7427 1.5442 0.0003 6 8 5.8569 1.0661 0.0975 7 7 4.5894 2.8784 -0.1132 8 6 3.2592 3.4455 -0.3479 9 6 2.5504 3.6257 0.9698 10 1 3.0415 3.3455 1.8899 11 6 1.2745 4.1475 1.0006 12 7 0.6763 4.4883 -0.1199 13 14 0.3963 4.3715 2.6340 14 1 1.1811 5.2917 3.4959 15 1 -0.9522 4.9463 2.3961 16 1 0.2620 3.0554 3.3084 17 6 5.7530 3.7615 -0.0021 18 6 6.3496 3.9962 -1.3913 19 6 7.5185 4.8840 -1.2796 20 7 8.4211 5.5688 -1.1911 21 6 3.5662 -0.6983 -0.0051 22 35 5.0895 -1.8187 -0.0151 23 8 2.2829 -1.0937 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 3.3582 4.4119 -0.8423 28 1 2.6831 2.7708 -0.9810 29 1 -0.2215 4.8550 -0.0982 30 1 5.4457 4.7150 0.4272 31 1 6.5010 3.2976 0.6409 32 1 6.6569 3.0426 -1.8206 33 1 5.6016 4.4600 -2.0343 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191630515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = 21.295012 kcal Electronic energy + Delta-G solvation = -21690.896856 eV Core-core repulsion = 18186.381208 eV Total energy + Delta-G solvation = -3504.515648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 341.016 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.38939 -40.67235 -37.91156 -36.80577 -35.88732 -34.49967 -33.80166 -32.53606 -31.86819 -28.93543 -28.29584 -26.13512 -24.91606 -23.71275 -22.36887 -20.40645 -18.88150 -18.44273 -18.21778 -17.93262 -17.35427 -16.97928 -16.24867 -15.87434 -15.75947 -15.13998 -14.92433 -14.65341 -14.34192 -14.14197 -13.95847 -13.60422 -13.57466 -13.34930 -13.23033 -12.94394 -12.68554 -12.63520 -12.35344 -12.12847 -12.06171 -11.86611 -11.80209 -11.57355 -11.18812 -10.72034 -10.30001 -9.86890 -9.41672 -7.95237 -5.98549 -0.42713 -0.18551 1.13606 1.46477 1.50375 1.54844 1.66083 1.80231 2.05432 2.15994 2.32617 2.56245 3.03463 3.19211 3.39363 3.64145 4.05276 4.14180 4.17456 4.34568 4.56215 4.68860 4.69813 4.78384 4.90946 5.01141 5.07207 5.25025 5.57118 5.86716 5.95655 6.34741 6.47480 6.56673 6.59946 7.02391 7.22590 7.64578 9.12337 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.006736 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.630863 B = 4155.696404 C = 7014.760522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.197 3.803 3 N -0.419 5.419 4 C -0.023 4.023 5 C 0.588 3.412 6 O -0.550 6.550 7 N -0.579 5.579 8 C 0.252 3.748 9 C -0.499 4.499 10 H 0.033 0.967 11 C 0.041 3.959 12 N -0.912 5.912 13 Si 0.927 3.073 14 H -0.284 1.284 15 H -0.283 1.283 16 H -0.279 1.279 17 C 0.124 3.876 18 C -0.030 4.030 19 C 0.247 3.753 20 N -0.489 5.489 21 C -0.021 4.021 22 Br 0.109 6.891 23 O -0.185 6.185 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.261 0.739 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 -13.096 -2.670 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.013 4.013 3 N -0.148 5.148 4 C -0.148 4.148 5 C 0.375 3.625 6 O -0.430 6.430 7 N -0.308 5.308 8 C 0.131 3.869 9 C -0.539 4.539 10 H 0.052 0.948 11 C -0.158 4.158 12 N -0.553 5.553 13 Si 0.755 3.245 14 H -0.211 1.211 15 H -0.209 1.209 16 H -0.205 1.205 17 C 0.000 4.000 18 C -0.071 4.071 19 C -0.071 4.071 20 N -0.167 5.167 21 C -0.156 4.156 22 Br 0.192 6.808 23 O -0.074 6.074 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.927 -12.004 -2.563 12.618 hybrid contribution -1.090 -0.350 1.017 1.531 sum 1.837 -12.353 -1.546 12.585 Atomic orbital electron populations 1.20535 0.77973 1.06007 1.06414 1.27606 0.98108 0.77482 0.98082 1.71881 0.99642 1.27905 1.15337 1.21800 0.93746 0.90942 1.08263 1.16835 0.85925 0.82432 0.77279 1.90775 1.24226 1.75409 1.52624 1.48022 1.10504 1.04531 1.67744 1.19427 0.76886 0.93975 0.96564 1.21199 0.99912 1.40228 0.92518 0.94834 1.25117 0.97401 0.95680 0.97630 1.69964 1.14313 1.44322 1.26679 0.86119 0.78203 0.77985 0.82167 1.21057 1.20854 1.20468 1.21292 0.87741 0.95221 0.95755 1.19690 0.89642 0.97662 1.00138 1.29184 0.93603 0.92551 0.91720 1.81228 1.13177 1.12280 1.10031 1.25181 0.85143 0.94300 1.10976 1.96864 1.23280 1.63337 1.97348 1.84369 1.14462 1.38446 1.70156 0.86680 0.86448 0.88804 0.95500 0.93064 0.93019 0.89178 0.89824 0.85869 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.19 10.51 71.23 0.75 -0.44 16 2 C 0.20 6.39 8.30 88.39 0.73 7.13 16 3 N -0.42 -16.79 6.89 -292.95 -2.02 -18.81 16 4 C -0.02 -0.91 6.56 40.40 0.27 -0.64 16 5 C 0.59 22.84 7.61 86.62 0.66 23.50 16 6 O -0.55 -21.09 14.94 -4.13 -0.06 -21.15 16 7 N -0.58 -21.77 2.47 -830.19 -2.05 -23.82 16 8 C 0.25 11.02 4.75 85.64 0.41 11.43 16 9 C -0.50 -24.50 7.76 25.60 0.20 -24.30 16 10 H 0.03 1.74 7.81 -2.91 -0.02 1.71 16 11 C 0.04 2.05 5.46 84.66 0.46 2.52 16 12 N -0.91 -46.88 13.29 21.45 0.28 -46.59 16 13 Si 0.93 40.48 29.54 68.60 2.03 42.51 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.12 3.77 5.32 86.38 0.46 4.23 16 18 C -0.03 -0.72 6.03 28.79 0.17 -0.55 16 19 C 0.25 6.66 15.44 89.44 1.38 8.04 16 20 N -0.49 -15.73 18.54 20.01 0.37 -15.36 16 21 C -0.02 -0.72 7.92 67.36 0.53 -0.19 16 22 Br 0.11 3.02 32.42 -20.37 -0.66 2.36 16 23 O -0.19 -5.83 10.73 -0.36 0.00 -5.83 16 24 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.03 1.21 8.04 -2.38 -0.02 1.19 16 28 H 0.05 2.42 5.83 -2.39 -0.01 2.41 16 29 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 30 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 31 H 0.08 2.55 7.46 -2.39 -0.02 2.53 16 32 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -61.12 322.03 5.07 -56.05 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.16 Total: -0.05 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: 6.02 Total: 30.71 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -3.41 Total: -104.59 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 35 Polarization: 3.02 SS G_CDS: -0.66 Total: 2.36 kcal Total: -61.12 5.07 -56.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191630515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.346 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds