Wall clock time and date at job start Sat Apr 11 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47304 * 239.99763 * 3 2 1 5 5 H 1.48503 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46874 * 119.99888 * 3 2 1 7 7 C 1.37877 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00404 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.39106 * 119.99678 * 65.28004 * 12 9 7 14 14 N 1.32627 * 120.08749 * 359.71981 * 13 12 9 15 15 C 1.32246 * 119.93839 * 180.02562 * 14 13 12 16 16 C 1.38254 * 120.12286 * 0.02562 * 15 14 13 17 17 Br 1.89107 * 119.91443 * 179.97438 * 16 15 14 18 18 N 1.32350 * 120.17939 * 359.97438 * 16 15 14 19 19 C 1.32048 * 120.05548 * 359.71578 * 18 16 15 20 20 Cl 1.73598 * 120.06123 * 180.27547 * 19 18 16 21 21 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 23 23 H 1.08004 * 119.94448 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.0906 -4.1036 1.0949 14 7 2.9979 -3.2881 2.1367 15 6 3.8003 -3.4504 3.1753 16 6 4.7360 -4.4682 3.1768 17 35 5.8810 -4.6944 4.6648 18 7 4.8327 -5.2846 2.1397 19 6 4.0309 -5.1328 1.1015 20 17 4.1527 -6.2081 -0.2559 21 1 -0.4850 0.8400 -0.0004 22 1 2.3173 -4.5325 -0.7608 23 1 3.7252 -2.7862 4.0236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192938730.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:30 Heat of formation + Delta-G solvation = -39.582011 kcal Electronic energy + Delta-G solvation = -17343.272400 eV Core-core repulsion = 14004.770759 eV Total energy + Delta-G solvation = -3338.501641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 340.902 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27000 -36.98137 -36.05169 -35.39175 -34.21716 -33.81978 -33.16987 -31.94583 -28.88202 -26.27454 -25.06418 -23.72824 -19.65470 -18.50743 -18.40640 -17.17883 -16.87348 -16.11703 -15.66456 -15.12525 -14.86020 -14.16236 -13.78129 -13.47855 -12.61960 -12.43229 -12.09517 -11.80051 -11.68950 -11.43725 -11.25645 -11.05088 -10.74495 -10.67940 -10.66874 -10.59519 -10.48985 -10.39988 -9.32910 -9.29945 -9.00320 -8.39886 -6.80413 -5.41741 0.47084 0.84409 1.03014 1.58669 1.80675 3.04335 3.07978 3.12846 3.35366 3.43318 3.96164 4.02607 4.30514 4.55988 4.67807 4.77800 5.40266 5.57886 6.01817 6.21291 6.68673 7.08227 7.21709 7.55196 7.83585 8.78244 10.14939 Molecular weight = 340.90amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004860 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.495216 B = 5759.653964 C = 7002.085749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.135 3.865 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.995 4.995 8 H 0.101 0.899 9 S 2.687 3.313 10 O -0.987 6.987 11 O -0.966 6.966 12 N -1.027 6.027 13 C 0.402 3.598 14 N -0.427 5.427 15 C 0.153 3.847 16 C 0.024 3.976 17 Br 0.011 6.989 18 N -0.378 5.378 19 C 0.085 3.915 20 Cl -0.008 7.008 21 H 0.293 0.707 22 H 0.426 0.574 23 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.661 -8.202 6.931 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.083 4.083 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.130 5.130 8 H 0.120 0.880 9 S 2.788 3.212 10 O -0.977 6.977 11 O -0.956 6.956 12 N -0.765 5.765 13 C 0.161 3.839 14 N -0.147 5.147 15 C -0.012 4.012 16 C -0.196 4.196 17 Br 0.093 6.907 18 N -0.096 5.096 19 C -0.093 4.093 20 Cl 0.020 6.980 21 H 0.104 0.896 22 H 0.262 0.738 23 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.824 -8.324 7.363 15.514 hybrid contribution 0.832 0.724 -0.879 1.410 sum 11.657 -7.600 6.485 15.352 Atomic orbital electron populations 1.69867 1.06729 1.31082 1.39725 1.24707 0.94517 1.00718 0.88398 0.86132 0.79826 0.79351 0.79855 1.18888 1.20020 1.18705 1.30054 1.05620 1.10164 1.67125 0.88047 1.01683 0.72266 0.73771 0.73473 1.93437 1.71627 1.87044 1.45580 1.93414 1.71219 1.86332 1.44613 1.54882 1.49790 1.49887 1.21906 1.18693 0.87900 0.88985 0.88356 1.68635 1.23048 1.23730 0.99323 1.23738 0.87416 0.93875 0.96141 1.23566 1.01543 0.98719 0.95818 1.96778 1.63184 1.97656 1.33058 1.67319 1.20325 1.23824 0.98116 1.22134 0.98010 0.95934 0.93266 1.98401 1.97303 1.63315 1.38990 0.89634 0.73759 0.79055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.78 13.19 55.43 0.73 -23.05 14 2 C 0.14 3.61 5.46 -17.82 -0.10 3.51 14 3 Si 0.92 19.89 29.54 -169.99 -5.02 14.87 14 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 14 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 14 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 14 7 C -0.99 -26.11 9.37 30.60 0.29 -25.82 14 8 H 0.10 2.46 7.81 -52.49 -0.41 2.05 14 9 S 2.69 68.20 4.66 -107.50 -0.50 67.70 14 10 O -0.99 -27.25 18.02 -57.17 -1.03 -28.28 14 11 O -0.97 -26.86 16.90 -57.17 -0.97 -27.82 14 12 N -1.03 -20.04 5.81 31.24 0.18 -19.86 14 13 C 0.40 7.45 7.34 -154.62 -1.13 6.32 14 14 N -0.43 -8.23 8.54 -12.18 -0.10 -8.33 14 15 C 0.15 2.29 10.95 -17.37 -0.19 2.10 14 16 C 0.02 0.34 7.17 -17.32 -0.12 0.21 14 17 Br 0.01 0.12 33.89 -68.01 -2.30 -2.18 14 18 N -0.38 -5.84 10.45 -8.43 -0.09 -5.93 14 19 C 0.08 1.36 7.31 -17.02 -0.12 1.24 14 20 Cl -0.01 -0.11 27.78 -51.86 -1.44 -1.55 14 21 H 0.29 7.44 8.31 -40.82 -0.34 7.10 14 22 H 0.43 6.96 7.50 -34.47 -0.26 6.70 14 23 H 0.19 2.19 8.06 -52.48 -0.42 1.77 14 LS Contribution 269.37 15.07 4.06 4.06 Total: -1.00 -32.54 269.37 -8.09 -40.64 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -0.23 Total: 2.18 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.38 Total: -12.44 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.72 Total: -57.17 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -2.00 Total: -56.10 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 68.20 SS G_CDS: -0.50 Total: 67.70 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.44 Total: -1.55 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -2.30 Total: -2.18 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.54 -8.09 -40.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938730.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.055 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds