Wall clock time and date at job start Sat Apr 11 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47304 * 239.99763 * 3 2 1 5 5 H 1.48503 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46874 * 119.99888 * 3 2 1 7 7 C 1.37877 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00404 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.39106 * 119.99678 * 65.28004 * 12 9 7 14 14 N 1.32627 * 120.08749 * 359.71981 * 13 12 9 15 15 C 1.32246 * 119.93839 * 180.02562 * 14 13 12 16 16 C 1.38254 * 120.12286 * 0.02562 * 15 14 13 17 17 Br 1.89107 * 119.91443 * 179.97438 * 16 15 14 18 18 N 1.32350 * 120.17939 * 359.97438 * 16 15 14 19 19 C 1.32048 * 120.05548 * 359.71578 * 18 16 15 20 20 Cl 1.73598 * 120.06123 * 180.27547 * 19 18 16 21 21 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 23 23 H 1.08004 * 119.94448 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.0906 -4.1036 1.0949 14 7 2.9979 -3.2881 2.1367 15 6 3.8003 -3.4504 3.1753 16 6 4.7360 -4.4682 3.1768 17 35 5.8810 -4.6944 4.6648 18 7 4.8327 -5.2846 2.1397 19 6 4.0309 -5.1328 1.1015 20 17 4.1527 -6.2081 -0.2559 21 1 -0.4850 0.8400 -0.0004 22 1 2.3173 -4.5325 -0.7608 23 1 3.7252 -2.7862 4.0236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938730.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:30 Heat of formation + Delta-G solvation = -65.337567 kcal Electronic energy + Delta-G solvation = -17344.389245 eV Core-core repulsion = 14004.770759 eV Total energy + Delta-G solvation = -3339.618486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 340.902 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.54663 -38.16359 -37.68894 -37.22245 -36.28929 -35.27558 -35.03697 -33.10374 -30.13448 -28.29814 -26.35180 -25.04235 -21.38803 -20.15102 -19.97313 -18.73115 -18.29328 -17.86910 -17.05801 -16.85547 -16.21850 -15.96498 -15.70267 -14.66249 -14.09626 -13.89480 -13.59217 -13.45074 -13.11126 -13.06908 -12.98753 -12.67993 -12.61006 -12.49406 -12.31771 -12.06962 -11.67602 -11.66856 -11.22267 -10.98192 -10.58325 -9.70495 -8.76737 -7.47665 -0.77970 -0.42675 -0.16645 0.01357 0.39610 1.35634 1.38149 1.50923 1.97302 2.09510 2.24655 2.58108 2.75497 2.93442 3.27525 3.50223 3.61712 4.08597 4.36724 4.75131 5.24980 5.29487 5.71629 5.85424 6.24300 6.77011 8.20812 Molecular weight = 340.90amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.004860 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.495216 B = 5759.653964 C = 7002.085749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.989 3.011 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.250 1.250 7 C -1.009 5.009 8 H 0.114 0.886 9 S 2.702 3.298 10 O -1.021 7.021 11 O -1.000 7.000 12 N -1.022 6.022 13 C 0.376 3.624 14 N -0.467 5.467 15 C 0.150 3.850 16 C 0.033 3.967 17 Br 0.051 6.949 18 N -0.382 5.382 19 C 0.089 3.911 20 Cl 0.014 6.986 21 H 0.300 0.700 22 H 0.438 0.562 23 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.911 -7.934 7.920 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.173 1.173 7 C -1.144 5.144 8 H 0.133 0.867 9 S 2.804 3.196 10 O -1.011 7.011 11 O -0.990 6.990 12 N -0.766 5.766 13 C 0.137 3.863 14 N -0.188 5.188 15 C -0.014 4.014 16 C -0.187 4.187 17 Br 0.134 6.866 18 N -0.099 5.099 19 C -0.088 4.088 20 Cl 0.042 6.958 21 H 0.111 0.889 22 H 0.277 0.723 23 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 13.083 -8.097 8.348 17.504 hybrid contribution 0.273 0.501 -1.044 1.190 sum 13.356 -7.596 7.304 17.013 Atomic orbital electron populations 1.69955 1.08552 1.32533 1.41090 1.25894 0.95362 1.04895 0.87523 0.85175 0.78802 0.74635 0.80657 1.17717 1.18724 1.17349 1.30348 1.06395 1.10807 1.66837 0.86746 1.00871 0.72423 0.74123 0.72197 1.93382 1.73295 1.87808 1.46652 1.93359 1.72862 1.87091 1.45692 1.54067 1.49861 1.49393 1.23264 1.18733 0.88930 0.90486 0.88184 1.68525 1.24710 1.25001 1.00534 1.24271 0.86706 0.94511 0.95871 1.24019 1.01097 0.97463 0.96163 1.96832 1.61751 1.97492 1.30572 1.67518 1.20091 1.24058 0.98262 1.22080 0.97206 0.95513 0.94013 1.98407 1.97170 1.62361 1.37865 0.88935 0.72322 0.76015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.91 13.19 21.45 0.28 -50.63 14 2 C 0.08 4.10 5.46 84.65 0.46 4.56 14 3 Si 0.99 39.76 29.54 68.60 2.03 41.78 14 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 14 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 14 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 14 7 C -1.01 -53.20 9.37 67.73 0.63 -52.57 14 8 H 0.11 5.52 7.81 -2.91 -0.02 5.50 14 9 S 2.70 140.36 4.66 -56.49 -0.26 140.09 14 10 O -1.02 -58.13 18.02 -128.00 -2.31 -60.43 14 11 O -1.00 -57.24 16.90 -128.00 -2.16 -59.40 14 12 N -1.02 -40.36 5.81 -55.06 -0.32 -40.68 14 13 C 0.38 13.83 7.34 133.03 0.98 14.81 14 14 N -0.47 -17.78 8.54 -192.44 -1.64 -19.43 14 15 C 0.15 4.26 10.95 84.63 0.93 5.19 14 16 C 0.03 0.87 7.17 84.62 0.61 1.48 14 17 Br 0.05 0.98 33.89 -20.37 -0.69 0.29 14 18 N -0.38 -11.06 10.45 -180.58 -1.89 -12.95 14 19 C 0.09 2.75 7.31 84.94 0.62 3.37 14 20 Cl 0.01 0.36 27.78 -2.72 -0.08 0.28 14 21 H 0.30 15.47 8.31 -92.71 -0.77 14.69 14 22 H 0.44 14.46 7.50 -96.74 -0.73 13.74 14 23 H 0.22 4.58 8.06 -2.91 -0.02 4.55 14 Total: -1.00 -70.41 269.37 -2.23 -72.65 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.58 Total: 11.59 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.23 Total: -23.16 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -3.57 Total: -123.68 kcal Atomic # 8 Polarization: -115.37 SS G_CDS: -4.47 Total: -119.84 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 16 Polarization: 140.36 SS G_CDS: -0.26 Total: 140.09 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.28 kcal Atomic # 35 Polarization: 0.98 SS G_CDS: -0.69 Total: 0.29 kcal Total: -70.41 -2.23 -72.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938730.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.311 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds