Wall clock time and date at job start Sat Apr 11 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.36692 * 125.17211 * 157.72014 * 3 2 1 5 5 C 1.36875 * 114.70434 * 179.74360 * 4 3 2 6 6 C 1.36500 * 114.76342 * 0.43633 * 5 4 3 7 7 C 1.47599 * 125.14695 * 179.85145 * 6 5 4 8 8 C 1.34780 * 122.42127 * 179.71691 * 7 6 5 9 9 S 1.76181 * 108.28654 * 179.97438 * 8 7 6 10 10 C 1.76059 * 90.14414 * 359.97438 * 9 8 7 11 11 N 1.38503 * 125.23168 * 180.02562 * 10 9 8 12 12 S 1.65598 * 119.99901 * 359.97438 * 11 10 9 13 13 O 1.42097 * 106.40177 * 178.54253 * 12 11 10 14 14 O 1.42104 * 106.40194 * 311.46005 * 12 11 10 15 15 C 1.76199 * 107.21843 * 65.00242 * 12 11 10 16 16 H 1.08009 * 119.99708 * 359.97438 * 15 12 11 17 17 C 1.37871 * 120.00196 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99840 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00361 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46960 * 60.00144 * 19 17 15 21 21 H 1.48491 * 109.47488 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47083 * 300.00527 * 19 17 15 23 23 N 1.29632 * 109.54049 * 0.02562 * 10 9 8 24 24 S 1.75834 * 109.70699 * 359.58668 * 6 5 4 25 25 H 1.08001 * 122.64620 * 359.97438 * 4 3 2 26 26 H 1.08006 * 122.61575 * 180.24954 * 5 4 3 27 27 H 1.07998 * 125.85282 * 359.97438 * 8 7 6 28 28 H 0.97005 * 119.99870 * 180.02562 * 11 10 9 29 29 H 0.96995 * 119.99936 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3550 1.0349 -0.4236 5 6 4.7010 0.8075 -0.3242 6 6 5.0387 -0.4181 0.1728 7 6 6.4182 -0.9031 0.3732 8 6 6.6891 -2.1246 0.8744 9 16 8.4389 -2.3142 0.9531 10 6 8.6485 -0.6972 0.2890 11 7 9.8669 -0.0879 0.0388 12 16 11.2772 -0.8904 0.3691 13 8 12.3331 -0.0246 -0.0241 14 8 11.1457 -1.4074 1.6862 15 6 11.3490 -2.2835 -0.7074 16 1 10.5486 -2.4652 -1.4094 17 6 12.4269 -3.1415 -0.6536 18 7 13.4013 -2.9204 0.2017 19 14 12.5028 -4.6187 -1.7943 20 1 12.4827 -4.1561 -3.2053 21 1 13.7536 -5.3773 -1.5394 22 1 11.3319 -5.4974 -1.5448 23 7 7.4871 -0.1644 0.0702 24 16 3.5814 -1.3288 0.5455 25 1 2.9468 1.9600 -0.8032 26 1 5.4384 1.5396 -0.6190 27 1 5.9588 -2.8608 1.1760 28 1 9.8940 0.8092 -0.3292 29 1 14.1598 -3.5238 0.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951817.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:45 Heat of formation + Delta-G solvation = 22.781542 kcal Electronic energy + Delta-G solvation = -20918.013092 eV Core-core repulsion = 17379.705945 eV Total energy + Delta-G solvation = -3538.307147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.975 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.58944 -38.05565 -36.54713 -35.78137 -34.89920 -34.45718 -33.35618 -30.89178 -28.84727 -26.46310 -25.70914 -23.71098 -20.98251 -20.76524 -20.08460 -18.80621 -17.95792 -17.11983 -16.73552 -16.48564 -15.85207 -15.31273 -15.11892 -14.90900 -14.42795 -14.12144 -14.00315 -13.92769 -13.52170 -13.18119 -12.99118 -12.78497 -12.27001 -12.22923 -11.68412 -11.41267 -11.36217 -11.26761 -11.25489 -11.07653 -10.77763 -10.74553 -10.61854 -9.60211 -9.46743 -9.34804 -9.21211 -8.94715 -8.89593 -7.75061 -6.96815 -5.64451 -0.12886 0.80814 1.06225 1.17579 1.40862 1.62189 1.89511 2.05231 2.61146 2.96351 2.99207 3.01394 3.06040 3.18656 3.62639 3.76696 4.01304 4.39862 4.44865 4.78408 5.06475 5.14632 5.25869 5.36186 5.60773 5.72076 5.85955 6.05307 6.10457 6.11723 7.05464 7.13038 7.15957 7.64397 7.78537 8.60753 9.97861 Molecular weight = 340.97amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.002888 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.916999 B = 9691.332583 C =10241.129845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.287 3.713 3 C -0.174 4.174 4 C -0.051 4.051 5 C -0.122 4.122 6 C -0.082 4.082 7 C 0.144 3.856 8 C -0.291 4.291 9 S 0.198 5.802 10 C 0.338 3.662 11 N -1.013 6.013 12 S 2.676 3.324 13 O -0.975 6.975 14 O -0.974 6.974 15 C -1.014 5.014 16 H 0.110 0.890 17 C 0.138 3.862 18 N -0.838 5.838 19 Si 0.925 3.075 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.259 1.259 23 N -0.513 5.513 24 S 0.225 5.775 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.177 0.823 28 H 0.426 0.574 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 1.657 -0.721 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.029 4.029 3 C -0.295 4.295 4 C -0.088 4.088 5 C -0.153 4.153 6 C -0.204 4.204 7 C 0.010 3.990 8 C -0.435 4.435 9 S 0.450 5.550 10 C -0.035 4.035 11 N -0.758 5.758 12 S 2.777 3.223 13 O -0.965 6.965 14 O -0.964 6.964 15 C -1.148 5.148 16 H 0.128 0.872 17 C -0.082 4.082 18 N -0.466 5.466 19 Si 0.748 3.252 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.184 1.184 23 N -0.237 5.237 24 S 0.492 5.508 25 H 0.171 0.829 26 H 0.178 0.822 27 H 0.194 0.806 28 H 0.262 0.738 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.261 0.035 0.843 14.286 hybrid contribution -0.118 1.121 -1.906 2.215 sum -14.379 1.156 -1.063 14.465 Atomic orbital electron populations 1.81302 1.11183 1.07107 1.09468 1.24292 0.90902 0.94175 0.93494 1.20207 0.89074 1.02147 1.18081 1.20493 0.92272 0.98373 0.97626 1.20477 0.95653 0.96940 1.02198 1.22889 0.94160 0.97973 1.05416 1.17251 0.89616 0.90287 1.01810 1.26988 1.01115 1.01896 1.13484 1.86386 0.97296 1.11557 1.59730 1.23771 0.88897 0.94010 0.96853 1.54286 1.17276 1.29153 1.75118 1.02044 0.69513 0.75184 0.75539 1.93449 1.49702 1.68930 1.84405 1.93447 1.83778 1.79865 1.39288 1.30214 1.15810 1.29839 1.38985 0.87225 1.24719 0.92132 0.97716 0.93660 1.69859 1.08238 1.37340 1.31208 0.86102 0.78794 0.79761 0.80533 1.18582 1.19863 1.18369 1.66626 0.95873 1.34844 1.26355 1.84126 0.92975 1.13946 1.59718 0.82941 0.82180 0.80592 0.73762 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.10 18.54 41.84 0.78 -4.32 15 2 C 0.29 2.98 15.81 -22.47 -0.36 2.62 15 3 C -0.17 -1.56 6.31 -38.21 -0.24 -1.81 15 4 C -0.05 -0.42 10.11 -40.63 -0.41 -0.83 15 5 C -0.12 -1.20 9.95 -40.70 -0.41 -1.60 15 6 C -0.08 -0.92 6.43 -36.39 -0.23 -1.16 15 7 C 0.14 2.03 6.66 -84.59 -0.56 1.47 15 8 C -0.29 -3.91 10.81 29.51 0.32 -3.59 15 9 S 0.20 3.41 20.73 -107.50 -2.23 1.18 15 10 C 0.34 6.11 8.26 -87.83 -0.73 5.38 15 11 N -1.01 -19.04 5.85 30.74 0.18 -18.86 15 12 S 2.68 63.97 4.61 -107.50 -0.50 63.48 15 13 O -0.97 -25.87 18.02 -57.17 -1.03 -26.90 15 14 O -0.97 -24.98 16.42 -57.17 -0.94 -25.92 15 15 C -1.01 -24.78 9.02 30.60 0.28 -24.50 15 16 H 0.11 2.44 7.81 -52.48 -0.41 2.03 15 17 C 0.14 3.45 5.46 -17.82 -0.10 3.35 15 18 N -0.84 -22.25 13.19 55.43 0.73 -21.52 15 19 Si 0.93 18.63 29.54 -169.99 -5.02 13.61 15 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 21 H -0.27 -5.30 7.11 56.52 0.40 -4.89 15 22 H -0.26 -5.01 7.11 56.52 0.40 -4.60 15 23 N -0.51 -8.36 10.42 -10.52 -0.11 -8.47 15 24 S 0.22 1.99 22.62 -107.50 -2.43 -0.44 15 25 H 0.15 0.87 8.06 -52.49 -0.42 0.45 15 26 H 0.16 1.54 8.06 -52.48 -0.42 1.11 15 27 H 0.18 1.75 7.80 -52.49 -0.41 1.35 15 28 H 0.43 6.75 8.95 -34.47 -0.31 6.44 15 29 H 0.30 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -30.83 319.07 -9.31 -40.13 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -1.11 Total: 3.87 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -2.44 Total: -20.66 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 1.58 Total: -53.17 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -1.97 Total: -52.82 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: 69.37 SS G_CDS: -5.16 Total: 64.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.83 -9.31 -40.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951817.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.916 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds