Wall clock time and date at job start Sat Apr 11 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.36692 * 125.17211 * 157.72014 * 3 2 1 5 5 C 1.36875 * 114.70434 * 179.74360 * 4 3 2 6 6 C 1.36500 * 114.76342 * 0.43633 * 5 4 3 7 7 C 1.47599 * 125.14695 * 179.85145 * 6 5 4 8 8 C 1.34780 * 122.42127 * 179.71691 * 7 6 5 9 9 S 1.76181 * 108.28654 * 179.97438 * 8 7 6 10 10 C 1.76059 * 90.14414 * 359.97438 * 9 8 7 11 11 N 1.38503 * 125.23168 * 180.02562 * 10 9 8 12 12 S 1.65598 * 119.99901 * 359.97438 * 11 10 9 13 13 O 1.42097 * 106.40177 * 178.54253 * 12 11 10 14 14 O 1.42104 * 106.40194 * 311.46005 * 12 11 10 15 15 C 1.76199 * 107.21843 * 65.00242 * 12 11 10 16 16 H 1.08009 * 119.99708 * 359.97438 * 15 12 11 17 17 C 1.37871 * 120.00196 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99840 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00361 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46960 * 60.00144 * 19 17 15 21 21 H 1.48491 * 109.47488 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47083 * 300.00527 * 19 17 15 23 23 N 1.29632 * 109.54049 * 0.02562 * 10 9 8 24 24 S 1.75834 * 109.70699 * 359.58668 * 6 5 4 25 25 H 1.08001 * 122.64620 * 359.97438 * 4 3 2 26 26 H 1.08006 * 122.61575 * 180.24954 * 5 4 3 27 27 H 1.07998 * 125.85282 * 359.97438 * 8 7 6 28 28 H 0.97005 * 119.99870 * 180.02562 * 11 10 9 29 29 H 0.96995 * 119.99936 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3550 1.0349 -0.4236 5 6 4.7010 0.8075 -0.3242 6 6 5.0387 -0.4181 0.1728 7 6 6.4182 -0.9031 0.3732 8 6 6.6891 -2.1246 0.8744 9 16 8.4389 -2.3142 0.9531 10 6 8.6485 -0.6972 0.2890 11 7 9.8669 -0.0879 0.0388 12 16 11.2772 -0.8904 0.3691 13 8 12.3331 -0.0246 -0.0241 14 8 11.1457 -1.4074 1.6862 15 6 11.3490 -2.2835 -0.7074 16 1 10.5486 -2.4652 -1.4094 17 6 12.4269 -3.1415 -0.6536 18 7 13.4013 -2.9204 0.2017 19 14 12.5028 -4.6187 -1.7943 20 1 12.4827 -4.1561 -3.2053 21 1 13.7536 -5.3773 -1.5394 22 1 11.3319 -5.4974 -1.5448 23 7 7.4871 -0.1644 0.0702 24 16 3.5814 -1.3288 0.5455 25 1 2.9468 1.9600 -0.8032 26 1 5.4384 1.5396 -0.6190 27 1 5.9588 -2.8608 1.1760 28 1 9.8940 0.8092 -0.3292 29 1 14.1598 -3.5238 0.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951817.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:45 Heat of formation + Delta-G solvation = 1.249770 kcal Electronic energy + Delta-G solvation = -20918.946780 eV Core-core repulsion = 17379.705945 eV Total energy + Delta-G solvation = -3539.240835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.975 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77356 -38.89220 -37.74237 -37.42778 -36.46690 -36.24698 -35.22388 -31.91908 -29.87171 -28.36795 -26.63788 -24.88417 -22.07683 -21.82379 -21.39939 -20.40974 -19.31271 -18.58114 -18.16139 -17.82037 -17.07416 -16.72913 -16.34013 -16.15766 -15.82806 -15.77134 -15.20698 -14.81920 -14.49541 -14.22589 -14.04053 -13.81325 -13.73370 -13.46842 -13.12299 -13.01628 -12.97685 -12.77848 -12.74144 -12.54403 -12.32952 -12.24719 -11.97874 -11.24086 -11.07578 -10.89610 -10.46917 -10.11879 -9.59286 -8.92463 -8.78924 -7.57376 -0.97200 -0.25946 -0.12548 -0.07239 0.06644 0.65188 0.70310 1.17340 1.39105 1.40317 1.53737 1.80392 2.00893 2.16177 2.27623 2.43324 2.56817 2.82877 3.19531 3.44491 3.83759 4.04695 4.20186 4.31380 4.43275 4.55374 4.74244 4.97257 5.19718 5.22953 5.34123 5.74187 5.81261 6.32302 6.51820 6.72218 8.15870 Molecular weight = 340.97amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.002888 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.916999 B = 9691.332583 C =10241.129845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.307 3.693 3 C -0.175 4.175 4 C -0.039 4.039 5 C -0.113 4.113 6 C -0.113 4.113 7 C 0.134 3.866 8 C -0.263 4.263 9 S 0.145 5.855 10 C 0.314 3.686 11 N -1.007 6.007 12 S 2.689 3.311 13 O -1.012 7.012 14 O -1.001 7.001 15 C -1.025 5.025 16 H 0.126 0.874 17 C 0.084 3.916 18 N -0.884 5.884 19 Si 0.985 3.015 20 H -0.252 1.252 21 H -0.264 1.264 22 H -0.245 1.245 23 N -0.506 5.506 24 S 0.267 5.733 25 H 0.180 0.820 26 H 0.161 0.839 27 H 0.213 0.787 28 H 0.437 0.563 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.200 0.986 -1.734 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.008 4.008 3 C -0.297 4.297 4 C -0.076 4.076 5 C -0.145 4.145 6 C -0.236 4.236 7 C 0.002 3.998 8 C -0.405 4.405 9 S 0.396 5.604 10 C -0.059 4.059 11 N -0.757 5.757 12 S 2.791 3.209 13 O -1.002 7.002 14 O -0.990 6.990 15 C -1.160 5.160 16 H 0.144 0.856 17 C -0.131 4.131 18 N -0.514 5.514 19 Si 0.803 3.197 20 H -0.176 1.176 21 H -0.188 1.188 22 H -0.168 1.168 23 N -0.229 5.229 24 S 0.535 5.465 25 H 0.198 0.802 26 H 0.178 0.822 27 H 0.230 0.770 28 H 0.276 0.724 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.670 -0.616 -0.158 16.682 hybrid contribution 0.396 1.423 -1.570 2.156 sum -16.274 0.807 -1.729 16.385 Atomic orbital electron populations 1.81336 1.12268 1.08290 1.10715 1.24328 0.90898 0.93119 0.92459 1.20292 0.88461 1.02762 1.18160 1.20668 0.91249 0.99081 0.96566 1.20606 0.96454 0.96371 1.01059 1.22876 0.93554 0.99445 1.07712 1.17636 0.90280 0.90352 1.01508 1.27229 0.98934 1.02285 1.12090 1.86512 1.01051 1.12177 1.60640 1.23784 0.88900 0.94405 0.98821 1.53506 1.16862 1.29493 1.75852 1.01336 0.69581 0.74876 0.75091 1.93393 1.52195 1.69816 1.84785 1.93401 1.84566 1.80328 1.40718 1.30492 1.16370 1.29873 1.39239 0.85624 1.25850 0.91530 1.00720 0.95005 1.69943 1.09296 1.38997 1.33177 0.85215 0.79721 0.76244 0.78526 1.17606 1.18795 1.16788 1.66607 0.95869 1.35078 1.25359 1.84001 0.91042 1.12753 1.58660 0.80248 0.82151 0.77016 0.72441 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.21 18.54 19.01 0.35 -9.86 15 2 C 0.31 5.56 15.81 88.33 1.40 6.96 15 3 C -0.18 -2.58 6.31 23.15 0.15 -2.43 15 4 C -0.04 -0.50 10.11 21.59 0.22 -0.28 15 5 C -0.11 -1.90 9.95 21.54 0.21 -1.68 15 6 C -0.11 -2.25 6.43 24.34 0.16 -2.09 15 7 C 0.13 3.53 6.66 40.58 0.27 3.80 15 8 C -0.26 -6.51 10.81 67.03 0.72 -5.79 15 9 S 0.15 4.97 20.73 -56.49 -1.17 3.80 15 10 C 0.31 11.31 8.26 179.37 1.48 12.79 15 11 N -1.01 -38.55 5.85 -56.65 -0.33 -38.88 15 12 S 2.69 132.16 4.61 -56.49 -0.26 131.90 15 13 O -1.01 -55.56 18.02 -128.00 -2.31 -57.87 15 14 O -1.00 -53.11 16.42 -128.00 -2.10 -55.21 15 15 C -1.02 -50.53 9.02 67.73 0.61 -49.92 15 16 H 0.13 5.57 7.81 -2.91 -0.02 5.55 15 17 C 0.08 4.22 5.46 84.65 0.46 4.69 15 18 N -0.88 -47.89 13.19 21.45 0.28 -47.60 15 19 Si 0.99 37.24 29.54 68.60 2.03 39.27 15 20 H -0.25 -9.09 7.11 99.48 0.71 -8.38 15 21 H -0.26 -9.43 7.11 99.48 0.71 -8.73 15 22 H -0.24 -8.58 7.11 99.48 0.71 -7.87 15 23 N -0.51 -15.95 10.42 -187.19 -1.95 -17.90 15 24 S 0.27 3.86 22.62 -56.49 -1.28 2.58 15 25 H 0.18 1.30 8.06 -2.91 -0.02 1.27 15 26 H 0.16 2.69 8.06 -2.91 -0.02 2.66 15 27 H 0.21 3.51 7.80 -2.91 -0.02 3.49 15 28 H 0.44 14.14 8.95 -96.74 -0.87 13.28 15 29 H 0.30 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -67.80 319.07 -0.67 -68.47 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.39 Total: 15.26 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 5.68 Total: -33.95 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -1.65 Total: -114.25 kcal Atomic # 8 Polarization: -108.67 SS G_CDS: -4.41 Total: -113.08 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 16 Polarization: 140.99 SS G_CDS: -2.71 Total: 138.28 kcal Total: -67.80 -0.67 -68.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951817.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.716 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds