Wall clock time and date at job start Sat Apr 11 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48496 * 109.47799 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47186 * 300.00038 * 3 2 1 6 6 H 1.48504 * 109.47385 * 59.99690 * 3 2 1 7 7 C 1.37883 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00420 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99631 * 0.02562 * 7 2 1 10 10 O 1.42106 * 106.39935 * 66.46085 * 9 7 2 11 11 O 1.42099 * 106.40322 * 293.54040 * 9 7 2 12 12 N 1.65600 * 107.21728 * 180.02562 * 9 7 2 13 13 C 1.38610 * 119.99864 * 64.99931 * 12 9 7 14 14 N 1.32662 * 120.16264 * 0.33827 * 13 12 9 15 15 C 1.32182 * 119.98864 * 180.29889 * 14 13 12 16 16 C 1.38455 * 120.32244 * 359.66173 * 15 14 13 17 17 N 1.31988 * 120.31927 * 359.97438 * 16 15 14 18 18 C 1.32818 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.48169 * 120.15752 * 180.02562 * 18 17 16 20 20 C 1.39815 * 120.55111 * 335.00260 * 19 18 17 21 21 C 1.38324 * 118.31422 * 179.72680 * 20 19 18 22 22 N 1.32429 * 119.21167 * 359.97438 * 21 20 19 23 23 C 1.31949 * 121.05929 * 0.02562 * 22 21 20 24 24 Cl 1.73592 * 119.07542 * 179.97438 * 23 22 21 25 25 N 1.31792 * 121.85301 * 359.97438 * 23 22 21 26 26 H 0.97001 * 120.00068 * 0.02562 * 1 2 3 27 27 H 0.97007 * 119.99901 * 245.00113 * 12 9 7 28 28 H 1.08000 * 119.83932 * 179.68423 * 15 14 13 29 29 H 1.07995 * 119.84449 * 180.02562 * 16 15 14 30 30 H 1.07995 * 120.83892 * 359.70194 * 20 19 18 31 31 H 1.07996 * 120.39099 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2483 -3.9355 0.0019 13 6 3.0905 -4.0990 1.0906 14 7 2.9938 -3.2880 2.1360 15 6 3.8027 -3.4434 3.1698 16 6 4.7483 -4.4546 3.1716 17 7 4.8506 -5.2732 2.1413 18 6 4.0443 -5.1286 1.0957 19 6 4.1557 -6.0458 -0.0626 20 6 5.3597 -6.7016 -0.3366 21 6 5.4103 -7.5521 -1.4264 22 7 4.3260 -7.7168 -2.1685 23 6 3.2038 -7.0836 -1.8843 24 17 1.8135 -7.3371 -2.8923 25 7 3.1088 -6.2641 -0.8565 26 1 -0.4850 0.8400 -0.0004 27 1 2.3177 -4.5329 -0.7591 28 1 3.7253 -2.7785 4.0173 29 1 5.4050 -4.5749 4.0205 30 1 6.2282 -6.5478 0.2865 31 1 6.3233 -8.0754 -1.6691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951892.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:49 Heat of formation + Delta-G solvation = -9.646265 kcal Electronic energy + Delta-G solvation = -24768.510033 eV Core-core repulsion = 20816.292884 eV Total energy + Delta-G solvation = -3952.217149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.014 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.69364 -41.72352 -38.11026 -37.60091 -37.06114 -36.27134 -35.98304 -35.22920 -34.43351 -33.11431 -30.85671 -28.34310 -27.11120 -25.86044 -24.79753 -24.09248 -21.24871 -20.01102 -19.74671 -19.33507 -18.73899 -18.47821 -17.59713 -16.99470 -16.82002 -16.73089 -16.52322 -16.25593 -15.84318 -15.78539 -15.57108 -14.86323 -14.22560 -14.06737 -13.50475 -13.31872 -13.10236 -13.05603 -12.97400 -12.70454 -12.67693 -12.61773 -12.53405 -12.45971 -12.32039 -12.30424 -11.79596 -11.28217 -11.00304 -10.79576 -10.74282 -10.12135 -9.49133 -8.79088 -7.51249 -0.99137 -0.42741 0.00888 0.08071 0.16352 0.31027 1.30959 1.32058 1.50070 2.10834 2.22828 2.27058 2.42964 2.54866 2.72008 2.97424 3.14660 3.23402 3.47655 3.56390 3.66609 3.84212 4.00775 4.17809 4.31334 4.39943 4.52411 4.75403 5.01024 5.20927 5.35423 5.59344 5.67108 5.81836 6.26195 6.51282 6.72021 6.73062 8.19117 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.004874 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.681293 B = 5743.043503 C = 7071.047574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.998 3.002 4 H -0.250 1.250 5 H -0.258 1.258 6 H -0.253 1.253 7 C -1.008 5.008 8 H 0.111 0.889 9 S 2.697 3.303 10 O -1.033 7.033 11 O -1.009 7.009 12 N -1.026 6.026 13 C 0.366 3.634 14 N -0.507 5.507 15 C 0.122 3.878 16 C 0.029 3.971 17 N -0.382 5.382 18 C 0.038 3.962 19 C 0.227 3.773 20 C -0.168 4.168 21 C 0.182 3.818 22 N -0.510 5.510 23 C 0.356 3.644 24 Cl 0.024 6.976 25 N -0.549 5.549 26 H 0.301 0.699 27 H 0.433 0.567 28 H 0.217 0.783 29 H 0.237 0.763 30 H 0.198 0.802 31 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.916 -12.033 3.676 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.815 3.185 4 H -0.173 1.173 5 H -0.183 1.183 6 H -0.177 1.177 7 C -1.143 5.143 8 H 0.129 0.871 9 S 2.799 3.201 10 O -1.023 7.023 11 O -0.999 6.999 12 N -0.776 5.776 13 C 0.129 3.871 14 N -0.228 5.228 15 C -0.042 4.042 16 C -0.136 4.136 17 N -0.097 5.097 18 C -0.106 4.106 19 C 0.084 3.916 20 C -0.190 4.190 21 C 0.018 3.982 22 N -0.228 5.228 23 C 0.062 3.938 24 Cl 0.052 6.948 25 N -0.270 5.270 26 H 0.111 0.889 27 H 0.279 0.721 28 H 0.233 0.767 29 H 0.253 0.747 30 H 0.215 0.785 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.698 -12.225 2.939 20.113 hybrid contribution 0.279 1.023 -0.160 1.073 sum 15.977 -11.202 2.779 19.710 Atomic orbital electron populations 1.69990 1.08751 1.32440 1.41291 1.26040 0.95454 1.05231 0.87427 0.85007 0.79155 0.74659 0.79653 1.17343 1.18260 1.17710 1.30397 1.06148 1.10990 1.66748 0.87091 1.00862 0.72818 0.74362 0.72017 1.93349 1.73967 1.88122 1.46910 1.93325 1.73447 1.87401 1.45691 1.54193 1.49818 1.49042 1.24544 1.19093 0.88896 0.91651 0.87441 1.68304 1.26751 1.26343 1.01405 1.24707 0.88069 0.96529 0.94907 1.24432 0.99569 0.91620 0.98003 1.68141 1.18912 1.24092 0.98544 1.19380 0.98108 0.96814 0.96262 1.19537 0.89634 0.92071 0.90373 1.23320 0.99057 0.96605 0.99992 1.24240 0.96219 0.90954 0.86775 1.68023 0.99184 1.23767 1.31808 1.22910 0.90233 0.91208 0.89466 1.98456 1.36761 1.94859 1.64738 1.67129 1.33732 1.19359 1.06752 0.88914 0.72142 0.76694 0.74661 0.78457 0.74345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.25 13.19 21.45 0.28 -53.96 16 2 C 0.07 4.04 5.46 84.66 0.46 4.51 16 3 Si 1.00 41.84 29.54 68.60 2.03 43.87 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 7 C -1.01 -57.92 9.36 67.74 0.63 -57.28 16 8 H 0.11 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.70 158.09 4.66 -56.49 -0.26 157.82 16 10 O -1.03 -66.18 18.02 -128.00 -2.31 -68.49 16 11 O -1.01 -63.97 16.89 -128.00 -2.16 -66.13 16 12 N -1.03 -48.70 5.67 -54.76 -0.31 -49.01 16 13 C 0.37 15.01 7.31 133.42 0.98 15.99 16 14 N -0.51 -20.46 8.52 -191.94 -1.63 -22.10 16 15 C 0.12 3.12 11.21 84.69 0.95 4.07 16 16 C 0.03 0.54 11.21 84.72 0.95 1.49 16 17 N -0.38 -9.15 9.96 -183.82 -1.83 -10.98 16 18 C 0.04 1.21 6.66 42.15 0.28 1.49 16 19 C 0.23 6.60 6.54 41.96 0.27 6.88 16 20 C -0.17 -3.03 9.70 22.67 0.22 -2.81 16 21 C 0.18 2.75 11.29 84.62 0.96 3.71 16 22 N -0.51 -12.03 10.39 -190.95 -1.98 -14.02 16 23 C 0.36 10.68 8.18 180.84 1.48 12.16 16 24 Cl 0.02 0.71 29.27 -2.72 -0.08 0.63 16 25 N -0.55 -18.61 7.28 -179.89 -1.31 -19.92 16 26 H 0.30 16.23 8.31 -92.71 -0.77 15.46 16 27 H 0.43 19.36 5.54 -96.74 -0.54 18.83 16 28 H 0.22 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 30 H 0.20 2.22 7.87 -2.91 -0.02 2.20 16 31 H 0.24 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -90.01 315.33 -1.69 -91.70 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.70 Total: 20.39 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 7.18 Total: -9.80 kcal Atomic # 7 Polarization: -163.21 SS G_CDS: -6.79 Total: -170.00 kcal Atomic # 8 Polarization: -130.15 SS G_CDS: -4.47 Total: -134.62 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 158.09 SS G_CDS: -0.26 Total: 157.82 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -0.08 Total: 0.63 kcal Total: -90.01 -1.69 -91.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951892.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.057 kcal (2) G-P(sol) polarization free energy of solvation -90.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds