Wall clock time and date at job start Sat Apr 11 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39790 * 126.07001 * 2 1 4 4 N 1.30858 * 108.48712 * 179.97438 * 3 2 1 5 5 N 1.40080 * 108.43411 * 0.02562 * 4 3 2 6 6 C 1.40148 * 126.10924 * 179.97438 * 5 4 3 7 7 C 1.38871 * 120.06499 * 324.97583 * 6 5 4 8 8 C 1.38100 * 119.96300 * 180.02562 * 7 6 5 9 9 C 1.38283 * 120.07846 * 359.97438 * 8 7 6 10 10 C 1.38377 * 120.12313 * 359.97438 * 9 8 7 11 11 Cl 1.73596 * 119.98162 * 180.02562 * 10 9 8 12 12 C 1.38259 * 120.03774 * 359.76950 * 10 9 8 13 13 C 1.36092 * 107.78022 * 359.77086 * 5 4 3 14 14 N 1.39177 * 126.28595 * 180.22429 * 13 5 4 15 15 S 1.65595 * 120.00016 * 239.94232 * 14 13 5 16 16 O 1.42100 * 106.39957 * 176.07027 * 15 14 13 17 17 O 1.42099 * 106.40624 * 308.98912 * 15 14 13 18 18 C 1.76196 * 107.21989 * 62.52984 * 15 14 13 19 19 H 1.07998 * 119.99843 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00334 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99481 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00344 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47127 * 120.00338 * 22 20 18 25 25 H 1.48501 * 109.47319 * 240.00626 * 22 20 18 26 26 H 1.09003 * 109.47495 * 85.47595 * 1 2 3 27 27 H 1.09004 * 109.46428 * 325.47986 * 1 2 3 28 28 H 1.08998 * 109.47307 * 205.48015 * 1 2 3 29 29 H 1.08004 * 125.75314 * 359.94237 * 3 2 1 30 30 H 1.08005 * 120.01900 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.96162 * 180.02562 * 8 7 6 32 32 H 1.07999 * 119.94032 * 180.02562 * 9 8 7 33 33 H 1.08002 * 120.03774 * 180.25024 * 12 10 9 34 34 H 0.96996 * 119.99536 * 59.94250 * 14 13 5 35 35 H 0.97007 * 119.99479 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1299 0.0000 4 7 3.5775 0.7346 0.0006 5 7 3.5983 -0.6660 0.0003 6 6 4.7427 -1.4750 0.0003 7 6 5.8790 -1.0729 -0.6894 8 6 7.0053 -1.8720 -0.6885 9 6 7.0032 -3.0719 -0.0012 10 6 5.8732 -3.4755 0.6880 11 17 5.8748 -4.9822 1.5501 12 6 4.7446 -2.6768 0.6948 13 6 2.3087 -1.1008 0.0048 14 7 1.8867 -2.4270 0.0105 15 16 0.9483 -3.0026 -1.2265 16 8 0.7666 -4.3903 -0.9801 17 8 -0.1320 -2.0906 -1.3687 18 6 1.9005 -2.8802 -2.7040 19 1 2.9039 -2.4825 -2.6683 20 6 1.3649 -3.2930 -3.9055 21 7 0.1431 -3.7777 -3.9489 22 14 2.3741 -3.1625 -5.4720 23 1 3.7065 -2.5880 -5.1561 24 1 2.5459 -4.5134 -6.0642 25 1 1.6725 -2.2828 -6.4411 26 1 -0.3634 0.0811 -1.0245 27 1 -0.3632 0.8468 0.5824 28 1 -0.3634 -0.9277 0.4421 29 1 1.9932 2.1561 -0.0009 30 1 5.8816 -0.1361 -1.2269 31 1 7.8891 -1.5590 -1.2245 32 1 7.8854 -3.6949 -0.0017 33 1 3.8641 -2.9899 1.2361 34 1 2.1422 -3.0141 0.7392 35 1 -0.2339 -4.0678 -4.7943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:55 Heat of formation + Delta-G solvation = 15.797313 kcal Electronic energy + Delta-G solvation = -25619.513143 eV Core-core repulsion = 21771.939654 eV Total energy + Delta-G solvation = -3847.573489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39468 -39.14603 -36.58594 -35.51446 -34.75138 -34.20407 -33.59108 -33.15316 -30.93181 -30.39826 -28.87847 -26.25875 -25.74356 -23.28245 -22.91910 -20.76793 -20.17412 -19.19686 -18.19865 -17.66054 -16.79182 -16.44572 -15.84945 -15.38047 -15.15061 -14.72268 -14.57855 -14.09856 -13.90089 -13.74660 -13.49476 -13.41083 -12.84780 -12.24708 -12.17790 -12.03527 -11.71596 -11.63390 -11.54346 -11.42975 -11.29851 -11.09196 -10.96987 -10.70495 -10.65800 -10.44827 -10.17918 -9.87941 -9.78351 -9.34165 -8.99689 -8.93600 -8.36355 -7.78649 -6.81393 -5.43561 0.80496 1.02180 1.80051 1.90184 2.23557 2.59945 2.99234 3.00358 3.08095 3.15773 3.48039 3.95696 4.32216 4.54338 4.58851 4.81335 4.84435 4.95635 5.15887 5.35840 5.43695 5.46653 5.58290 5.69185 5.95125 5.96698 6.08466 6.15197 6.25145 6.29774 6.43842 6.56007 6.66220 6.75891 7.05170 7.20200 7.22546 7.64378 7.81770 7.85264 8.78508 10.13176 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.005768 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.109390 B = 4853.283411 C = 5698.571597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.211 4.211 3 C 0.069 3.931 4 N -0.285 5.285 5 N -0.341 5.341 6 C 0.186 3.814 7 C -0.110 4.110 8 C -0.087 4.087 9 C -0.120 4.120 10 C -0.011 4.011 11 Cl -0.061 7.061 12 C -0.125 4.125 13 C 0.326 3.674 14 N -1.051 6.051 15 S 2.698 3.302 16 O -0.992 6.992 17 O -0.975 6.975 18 C -1.011 5.011 19 H 0.099 0.901 20 C 0.137 3.863 21 N -0.842 5.842 22 Si 0.919 3.081 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.191 0.809 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.410 0.590 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.701 5.120 7.661 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.225 4.225 3 C -0.118 4.118 4 N -0.104 5.104 5 N -0.122 5.122 6 C 0.093 3.907 7 C -0.130 4.130 8 C -0.106 4.106 9 C -0.139 4.139 10 C -0.038 4.038 11 Cl -0.032 7.032 12 C -0.147 4.147 13 C 0.109 3.891 14 N -0.800 5.800 15 S 2.799 3.201 16 O -0.982 6.982 17 O -0.965 6.965 18 C -1.145 5.145 19 H 0.117 0.883 20 C -0.082 4.082 21 N -0.472 5.472 22 Si 0.743 3.257 23 H -0.186 1.186 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.208 0.792 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.246 0.754 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.806 4.950 7.641 14.130 hybrid contribution 0.383 -0.619 -0.836 1.109 sum 11.189 4.331 6.804 13.793 Atomic orbital electron populations 1.20226 0.87252 1.01133 1.03532 1.20079 0.97965 0.90214 1.14267 1.23722 0.89554 0.99836 0.98640 1.77400 1.21058 0.86116 1.25860 1.46129 1.02916 1.04768 1.58417 1.17197 0.85988 0.90214 0.97275 1.21105 0.91923 1.01392 0.98580 1.20985 0.98087 0.93324 0.98180 1.21082 0.97463 0.97439 0.97963 1.20546 0.95299 0.89098 0.98897 1.98383 1.98686 1.30732 1.75382 1.20795 0.98628 0.94303 1.00962 1.17393 0.83305 0.85823 1.02541 1.53999 1.70573 1.13933 1.41507 1.01309 0.73411 0.72414 0.72937 1.93413 1.85647 1.33247 1.85866 1.93426 1.52489 1.64822 1.85766 1.30342 1.15193 1.57042 1.11909 0.88293 1.24688 0.94225 0.89072 1.00183 1.69884 1.13739 1.33591 1.29982 0.86137 0.80498 0.78882 0.80200 1.18623 1.19419 1.19372 0.89517 0.93289 0.91500 0.79193 0.84163 0.84159 0.84408 0.84572 0.75355 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.12 8.32 36.01 0.30 -0.82 16 2 C -0.21 -3.83 5.98 -104.78 -0.63 -4.46 16 3 C 0.07 1.07 11.94 -17.39 -0.21 0.87 16 4 N -0.28 -4.82 12.33 30.61 0.38 -4.44 16 5 N -0.34 -6.15 3.76 -9.78 -0.04 -6.18 16 6 C 0.19 3.07 6.40 -83.61 -0.54 2.53 16 7 C -0.11 -1.55 9.76 -39.40 -0.38 -1.94 16 8 C -0.09 -0.99 10.04 -39.62 -0.40 -1.38 16 9 C -0.12 -1.39 9.83 -39.51 -0.39 -1.78 16 10 C -0.01 -0.15 6.32 -39.52 -0.25 -0.40 16 11 Cl -0.06 -0.77 28.95 -51.86 -1.50 -2.27 16 12 C -0.13 -1.92 8.92 -39.36 -0.35 -2.27 16 13 C 0.33 6.32 6.79 -152.67 -1.04 5.28 16 14 N -1.05 -21.13 5.06 31.26 0.16 -20.97 16 15 S 2.70 68.91 4.99 -107.50 -0.54 68.37 16 16 O -0.99 -27.99 18.02 -57.17 -1.03 -29.02 16 17 O -0.98 -25.88 13.11 -57.17 -0.75 -26.63 16 18 C -1.01 -27.53 9.62 30.60 0.29 -27.24 16 19 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 20 C 0.14 3.75 5.46 -17.82 -0.10 3.66 16 21 N -0.84 -24.05 13.19 55.43 0.73 -23.32 16 22 Si 0.92 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 26 H 0.09 1.70 7.18 -51.93 -0.37 1.33 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.25 6.96 -51.93 -0.36 0.89 16 29 H 0.19 2.09 8.06 -52.48 -0.42 1.66 16 30 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.14 2.02 5.78 -52.49 -0.30 1.71 16 34 H 0.41 7.05 6.97 -34.47 -0.24 6.81 16 35 H 0.29 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -33.78 333.03 -9.21 -42.98 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -2.94 Total: 8.86 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.68 Total: -27.94 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 1.23 Total: -54.91 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -1.78 Total: -55.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 68.91 SS G_CDS: -0.54 Total: 68.37 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.78 -9.21 -42.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.780 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds