Wall clock time and date at job start Sat Apr 11 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39790 * 126.07001 * 2 1 4 4 N 1.30858 * 108.48712 * 179.97438 * 3 2 1 5 5 N 1.40080 * 108.43411 * 0.02562 * 4 3 2 6 6 C 1.40148 * 126.10924 * 179.97438 * 5 4 3 7 7 C 1.38871 * 120.06499 * 324.97583 * 6 5 4 8 8 C 1.38100 * 119.96300 * 180.02562 * 7 6 5 9 9 C 1.38283 * 120.07846 * 359.97438 * 8 7 6 10 10 C 1.38377 * 120.12313 * 359.97438 * 9 8 7 11 11 Cl 1.73596 * 119.98162 * 180.02562 * 10 9 8 12 12 C 1.38259 * 120.03774 * 359.76950 * 10 9 8 13 13 C 1.36092 * 107.78022 * 359.77086 * 5 4 3 14 14 N 1.39177 * 126.28595 * 180.22429 * 13 5 4 15 15 S 1.65595 * 120.00016 * 239.94232 * 14 13 5 16 16 O 1.42100 * 106.39957 * 176.07027 * 15 14 13 17 17 O 1.42099 * 106.40624 * 308.98912 * 15 14 13 18 18 C 1.76196 * 107.21989 * 62.52984 * 15 14 13 19 19 H 1.07998 * 119.99843 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00334 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99481 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00344 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47127 * 120.00338 * 22 20 18 25 25 H 1.48501 * 109.47319 * 240.00626 * 22 20 18 26 26 H 1.09003 * 109.47495 * 85.47595 * 1 2 3 27 27 H 1.09004 * 109.46428 * 325.47986 * 1 2 3 28 28 H 1.08998 * 109.47307 * 205.48015 * 1 2 3 29 29 H 1.08004 * 125.75314 * 359.94237 * 3 2 1 30 30 H 1.08005 * 120.01900 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.96162 * 180.02562 * 8 7 6 32 32 H 1.07999 * 119.94032 * 180.02562 * 9 8 7 33 33 H 1.08002 * 120.03774 * 180.25024 * 12 10 9 34 34 H 0.96996 * 119.99536 * 59.94250 * 14 13 5 35 35 H 0.97007 * 119.99479 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1299 0.0000 4 7 3.5775 0.7346 0.0006 5 7 3.5983 -0.6660 0.0003 6 6 4.7427 -1.4750 0.0003 7 6 5.8790 -1.0729 -0.6894 8 6 7.0053 -1.8720 -0.6885 9 6 7.0032 -3.0719 -0.0012 10 6 5.8732 -3.4755 0.6880 11 17 5.8748 -4.9822 1.5501 12 6 4.7446 -2.6768 0.6948 13 6 2.3087 -1.1008 0.0048 14 7 1.8867 -2.4270 0.0105 15 16 0.9483 -3.0026 -1.2265 16 8 0.7666 -4.3903 -0.9801 17 8 -0.1320 -2.0906 -1.3687 18 6 1.9005 -2.8802 -2.7040 19 1 2.9039 -2.4825 -2.6683 20 6 1.3649 -3.2930 -3.9055 21 7 0.1431 -3.7777 -3.9489 22 14 2.3741 -3.1625 -5.4720 23 1 3.7065 -2.5880 -5.1561 24 1 2.5459 -4.5134 -6.0642 25 1 1.6725 -2.2828 -6.4411 26 1 -0.3634 0.0811 -1.0245 27 1 -0.3632 0.8468 0.5824 28 1 -0.3634 -0.9277 0.4421 29 1 1.9932 2.1561 -0.0009 30 1 5.8816 -0.1361 -1.2269 31 1 7.8891 -1.5590 -1.2245 32 1 7.8854 -3.6949 -0.0017 33 1 3.8641 -2.9899 1.2361 34 1 2.1422 -3.0141 0.7392 35 1 -0.2339 -4.0678 -4.7943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:54 Heat of formation + Delta-G solvation = -6.698305 kcal Electronic energy + Delta-G solvation = -25620.488626 eV Core-core repulsion = 21771.939654 eV Total energy + Delta-G solvation = -3848.548972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69874 -40.20717 -37.64211 -37.55166 -36.38157 -36.21993 -35.24565 -34.78044 -31.98177 -31.70934 -30.11985 -28.35721 -27.10602 -24.42246 -23.98776 -22.05052 -21.68277 -21.04771 -19.50097 -19.44176 -18.52653 -17.86730 -17.20448 -16.89379 -16.60367 -16.08930 -15.92535 -15.83287 -15.58926 -14.87600 -14.67694 -14.60108 -14.27441 -14.02658 -13.65582 -13.49885 -13.22479 -13.09491 -13.07431 -12.92118 -12.69988 -12.66715 -12.51717 -12.36813 -12.26193 -12.07633 -11.96731 -11.34966 -11.28422 -11.09234 -10.92507 -10.03955 -9.66503 -9.11610 -8.83908 -7.56988 -0.35054 -0.01619 0.00384 0.80370 0.93598 1.25056 1.26090 1.34631 1.44395 1.69404 2.12905 2.43599 2.50100 2.61553 3.48464 3.51076 3.67553 3.88851 3.92104 4.00445 4.14431 4.29841 4.35362 4.39613 4.46986 4.71466 4.76310 4.97832 5.06840 5.13189 5.16148 5.18770 5.22960 5.44685 5.45936 5.64773 5.77390 5.82677 6.18843 6.52740 6.69781 8.12887 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.005768 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.109390 B = 4853.283411 C = 5698.571597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.224 4.224 3 C 0.079 3.921 4 N -0.288 5.288 5 N -0.343 5.343 6 C 0.150 3.850 7 C -0.119 4.119 8 C -0.074 4.074 9 C -0.110 4.110 10 C -0.022 4.022 11 Cl -0.057 7.057 12 C -0.144 4.144 13 C 0.296 3.704 14 N -1.039 6.039 15 S 2.712 3.288 16 O -1.029 7.029 17 O -0.993 6.993 18 C -1.031 5.031 19 H 0.101 0.899 20 C 0.081 3.919 21 N -0.884 5.884 22 Si 0.981 3.019 23 H -0.255 1.255 24 H -0.254 1.254 25 H -0.254 1.254 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.237 0.763 30 H 0.144 0.856 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.128 0.872 34 H 0.421 0.579 35 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.245 6.342 6.875 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.238 4.238 3 C -0.107 4.107 4 N -0.108 5.108 5 N -0.124 5.124 6 C 0.058 3.942 7 C -0.139 4.139 8 C -0.092 4.092 9 C -0.129 4.129 10 C -0.050 4.050 11 Cl -0.028 7.028 12 C -0.166 4.166 13 C 0.079 3.921 14 N -0.792 5.792 15 S 2.813 3.187 16 O -1.019 7.019 17 O -0.983 6.983 18 C -1.165 5.165 19 H 0.120 0.880 20 C -0.134 4.134 21 N -0.515 5.515 22 Si 0.799 3.201 23 H -0.179 1.179 24 H -0.178 1.178 25 H -0.178 1.178 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.253 0.747 30 H 0.162 0.838 31 H 0.199 0.801 32 H 0.188 0.812 33 H 0.146 0.854 34 H 0.259 0.741 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.361 6.156 6.876 16.239 hybrid contribution -0.337 -0.966 -0.485 1.133 sum 13.024 5.190 6.391 15.408 Atomic orbital electron populations 1.20170 0.87285 1.01972 1.02509 1.20391 0.98279 0.91000 1.14122 1.24388 0.88340 1.01071 0.96918 1.77369 1.21872 0.85767 1.25803 1.46236 1.02810 1.05119 1.58275 1.17588 0.86470 0.90900 0.99244 1.21343 0.92093 1.02072 0.98430 1.21452 0.98301 0.92309 0.97121 1.21529 0.97573 0.97629 0.96171 1.20757 0.95586 0.89183 0.99441 1.98382 1.98681 1.30379 1.75371 1.20859 0.99273 0.94745 1.01687 1.17620 0.84572 0.85303 1.04626 1.53220 1.70419 1.14938 1.40629 1.00651 0.73467 0.71490 0.73074 1.93353 1.86496 1.35465 1.86567 1.93405 1.53706 1.64826 1.86339 1.30640 1.15532 1.57193 1.13130 0.88035 1.25823 0.95343 0.88297 1.03907 1.69947 1.15436 1.34591 1.31534 0.85231 0.79034 0.79904 0.75922 1.17878 1.17846 1.17759 0.91946 0.89076 0.93489 0.74703 0.83850 0.80056 0.81168 0.85386 0.74105 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.16 8.32 71.24 0.59 -1.57 16 2 C -0.22 -8.03 5.98 -19.97 -0.12 -8.15 16 3 C 0.08 2.31 11.94 85.21 1.02 3.33 16 4 N -0.29 -9.41 12.33 -57.06 -0.70 -10.12 16 5 N -0.34 -12.33 3.76 -184.86 -0.69 -13.03 16 6 C 0.15 4.90 6.40 38.10 0.24 5.14 16 7 C -0.12 -3.18 9.76 22.39 0.22 -2.96 16 8 C -0.07 -1.43 10.04 22.25 0.22 -1.20 16 9 C -0.11 -2.22 9.83 22.31 0.22 -2.00 16 10 C -0.02 -0.58 6.32 22.31 0.14 -0.44 16 11 Cl -0.06 -1.39 28.95 -2.72 -0.08 -1.47 16 12 C -0.14 -4.45 8.92 22.41 0.20 -4.25 16 13 C 0.30 11.61 6.79 131.17 0.89 12.50 16 14 N -1.04 -43.35 5.06 -55.02 -0.28 -43.62 16 15 S 2.71 143.44 4.99 -56.49 -0.28 143.16 16 16 O -1.03 -60.44 18.02 -128.00 -2.31 -62.75 16 17 O -0.99 -54.74 13.11 -128.00 -1.68 -56.41 16 18 C -1.03 -57.13 9.62 67.73 0.65 -56.48 16 19 H 0.10 5.39 7.81 -2.91 -0.02 5.37 16 20 C 0.08 4.43 5.46 84.65 0.46 4.90 16 21 N -0.88 -51.34 13.19 21.45 0.28 -51.06 16 22 Si 0.98 41.32 29.54 68.60 2.03 43.35 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 26 H 0.06 2.50 7.18 -2.39 -0.02 2.48 16 27 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.05 1.81 6.96 -2.39 -0.02 1.79 16 29 H 0.24 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.13 3.98 5.78 -2.91 -0.02 3.96 16 34 H 0.42 15.28 6.97 -96.75 -0.67 14.61 16 35 H 0.30 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -75.29 333.03 1.52 -73.78 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.49 Total: 29.34 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 4.74 Total: -51.17 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -1.39 Total: -117.83 kcal Atomic # 8 Polarization: -115.18 SS G_CDS: -3.98 Total: -119.16 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 143.44 SS G_CDS: -0.28 Total: 143.16 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -75.29 1.52 -73.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.077 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds