Wall clock time and date at job start Sat Apr 11 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46904 * 239.99551 * 3 2 1 5 5 H 1.48494 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47075 * 120.00143 * 3 2 1 7 7 C 1.37876 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99912 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99801 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40505 * 293.53895 * 9 7 2 11 11 O 1.42099 * 106.40405 * 66.46077 * 9 7 2 12 12 N 1.65605 * 107.21775 * 179.97438 * 9 7 2 13 13 C 1.39746 * 119.99884 * 67.63093 * 12 9 7 14 14 C 1.38879 * 120.08227 * 327.51402 * 13 12 9 15 15 C 1.38112 * 119.94049 * 179.73991 * 14 13 12 16 16 S 1.76203 * 119.95516 * 180.22913 * 15 14 13 17 17 O 1.42095 * 106.40106 * 23.83949 * 16 15 14 18 18 O 1.42106 * 106.40129 * 156.76169 * 16 15 14 19 19 O 1.52199 * 107.21531 * 270.29800 * 16 15 14 20 20 C 1.38291 * 120.09227 * 0.52825 * 15 14 13 21 21 C 1.38278 * 120.15903 * 359.72436 * 20 15 14 22 22 C 1.38207 * 120.05560 * 0.02562 * 21 20 15 23 23 Cl 1.73599 * 120.04572 * 179.97438 * 22 21 20 24 24 H 0.97004 * 119.99799 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00034 * 247.64149 * 12 9 7 26 26 H 1.08004 * 120.02975 * 359.97136 * 14 13 12 27 27 H 0.96702 * 113.99906 * 180.02562 * 19 16 15 28 28 H 1.07999 * 119.92193 * 179.70074 * 20 15 14 29 29 H 1.08002 * 119.97174 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1235 -2.7199 0.0005 10 8 0.4509 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2483 -3.9354 0.0005 13 6 3.0609 -4.1354 1.1197 14 6 3.4491 -3.0543 1.9003 15 6 4.2478 -3.2560 3.0088 16 16 4.7356 -1.8853 4.0029 17 8 3.7639 -0.8703 3.7913 18 8 5.0442 -2.4104 5.2868 19 8 6.0423 -1.3556 3.4298 20 6 4.6704 -4.5314 3.3362 21 6 4.2906 -5.6100 2.5588 22 6 3.4872 -5.4162 1.4511 23 17 3.0111 -6.7704 0.4749 24 1 -0.4850 0.8401 0.0004 25 1 2.3432 -4.5084 -0.7764 26 1 3.1236 -2.0572 1.6428 27 1 6.4012 -0.5948 3.9068 28 1 5.2989 -4.6853 4.2009 29 1 4.6227 -6.6047 2.8170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:15 Heat of formation + Delta-G solvation = -187.528869 kcal Electronic energy + Delta-G solvation = -23720.771769 eV Core-core repulsion = 19695.866406 eV Total energy + Delta-G solvation = -4024.905363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 340.972 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61666 -38.37106 -37.23911 -36.58261 -35.88801 -35.51262 -34.83309 -34.22100 -33.23752 -31.16504 -29.00481 -26.41242 -23.63352 -22.80542 -21.14951 -19.18298 -18.74162 -18.39225 -17.83376 -16.82360 -16.55718 -16.25463 -16.18580 -15.29703 -15.01734 -14.81077 -14.18672 -14.07157 -13.72304 -13.51100 -13.18480 -12.83132 -12.38592 -12.35504 -12.13836 -12.07405 -11.92260 -11.81537 -11.37571 -11.21109 -11.14317 -11.02400 -10.93323 -10.67694 -10.55506 -10.46238 -10.44011 -9.30391 -9.18703 -9.01626 -8.13264 -6.82186 -5.49878 0.30765 0.66821 1.24857 1.89453 2.00595 2.93282 3.08361 3.12616 3.18579 3.33563 3.50094 3.95108 4.19327 4.52134 4.53505 4.75083 4.96299 5.24816 5.30715 5.47026 5.60625 5.74637 5.80761 5.92403 6.06962 6.13950 6.46209 6.65043 7.18061 7.44125 7.74839 8.74512 10.12409 Molecular weight = 340.97amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.007612 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.823050 B = 3677.314254 C = 6166.377832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.139 3.861 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.252 1.252 7 C -1.025 5.025 8 H 0.110 0.890 9 S 2.691 3.309 10 O -0.982 6.982 11 O -0.989 6.989 12 N -1.065 6.065 13 C 0.191 3.809 14 C -0.057 4.057 15 C -0.634 4.634 16 S 2.714 3.286 17 O -0.944 6.944 18 O -0.971 6.971 19 O -0.892 6.892 20 C -0.043 4.043 21 C -0.108 4.108 22 C -0.023 4.023 23 Cl -0.057 7.057 24 H 0.295 0.705 25 H 0.417 0.583 26 H 0.188 0.812 27 H 0.458 0.542 28 H 0.151 0.849 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.608 -5.971 5.585 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.081 4.081 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.176 1.176 7 C -1.158 5.158 8 H 0.128 0.872 9 S 2.792 3.208 10 O -0.972 6.972 11 O -0.979 6.979 12 N -0.805 5.805 13 C 0.090 3.910 14 C -0.079 4.079 15 C -0.722 4.722 16 S 2.803 3.197 17 O -0.943 6.943 18 O -0.969 6.969 19 O -0.760 6.760 20 C -0.064 4.064 21 C -0.128 4.128 22 C -0.055 4.055 23 Cl -0.028 7.028 24 H 0.106 0.894 25 H 0.252 0.748 26 H 0.205 0.795 27 H 0.326 0.674 28 H 0.168 0.832 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.291 -5.968 5.656 14.788 hybrid contribution 0.794 0.402 -0.776 1.180 sum 13.085 -5.566 4.881 15.034 Atomic orbital electron populations 1.69863 1.06888 1.31358 1.38451 1.24717 0.94528 1.00912 0.87955 0.86211 0.80234 0.79222 0.80291 1.18746 1.19906 1.17610 1.30416 1.06012 1.11042 1.68372 0.87208 1.01485 0.72323 0.73552 0.73483 1.93434 1.71701 1.86904 1.45163 1.93408 1.72114 1.87126 1.45256 1.54532 1.52669 1.52460 1.20881 1.17171 0.92965 0.91448 0.89445 1.21790 0.92667 1.01399 0.92009 1.30277 1.12969 1.15679 1.13263 1.00886 0.72317 0.74242 0.72295 1.93736 1.60411 1.55515 1.84619 1.93613 1.83017 1.81244 1.39047 1.85544 1.60509 1.57256 1.72731 1.20754 0.97102 0.90210 0.98313 1.20943 0.98092 1.00268 0.93467 1.21142 1.01717 0.87379 0.95267 1.98365 1.90885 1.43456 1.70080 0.89428 0.74828 0.79521 0.67377 0.83186 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.92 13.19 55.43 0.73 -23.19 15 2 C 0.14 3.75 5.46 -17.82 -0.10 3.66 15 3 Si 0.92 19.98 29.54 -169.99 -5.02 14.96 15 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.25 -5.32 7.11 56.52 0.40 -4.92 15 7 C -1.03 -26.93 7.57 30.60 0.23 -26.70 15 8 H 0.11 2.54 6.91 -52.49 -0.36 2.18 15 9 S 2.69 70.12 4.63 -107.50 -0.50 69.62 15 10 O -0.98 -28.27 17.43 -57.17 -1.00 -29.27 15 11 O -0.99 -28.12 18.02 -57.17 -1.03 -29.15 15 12 N -1.06 -21.47 5.55 32.44 0.18 -21.29 15 13 C 0.19 3.58 6.20 -83.73 -0.52 3.06 15 14 C -0.06 -1.08 8.39 -39.39 -0.33 -1.41 15 15 C -0.63 -9.83 5.96 -39.61 -0.24 -10.06 15 16 S 2.71 36.23 5.96 -107.50 -0.64 35.59 15 17 O -0.94 -16.88 17.28 -66.81 -1.15 -18.04 15 18 O -0.97 -13.58 17.27 -66.81 -1.15 -14.74 15 19 O -0.89 -8.27 13.45 -67.36 -0.91 -9.18 15 20 C -0.04 -0.55 9.52 -39.55 -0.38 -0.93 15 21 C -0.11 -1.36 9.82 -39.58 -0.39 -1.75 15 22 C -0.02 -0.36 6.34 -39.31 -0.25 -0.61 15 23 Cl -0.06 -0.78 27.91 -51.86 -1.45 -2.22 15 24 H 0.30 7.59 8.31 -40.82 -0.34 7.25 15 25 H 0.42 7.19 8.11 -34.48 -0.28 6.91 15 26 H 0.19 3.96 4.05 -52.48 -0.21 3.74 15 27 H 0.46 1.54 9.03 67.38 0.61 2.15 15 28 H 0.15 1.44 7.61 -52.49 -0.40 1.04 15 29 H 0.14 1.32 8.06 -52.49 -0.42 0.90 15 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -38.65 302.86 -9.54 -48.19 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -0.20 Total: 8.89 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: -1.97 Total: -34.75 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.91 Total: -44.47 kcal Atomic # 8 Polarization: -95.13 SS G_CDS: -5.24 Total: -100.37 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 106.35 SS G_CDS: -1.14 Total: 105.21 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.45 Total: -2.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -38.65 -9.54 -48.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.340 kcal (2) G-P(sol) polarization free energy of solvation -38.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds