Wall clock time and date at job start Sat Apr 11 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46904 * 239.99551 * 3 2 1 5 5 H 1.48494 * 109.47439 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47075 * 120.00143 * 3 2 1 7 7 C 1.37876 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99912 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99801 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40505 * 293.53895 * 9 7 2 11 11 O 1.42099 * 106.40405 * 66.46077 * 9 7 2 12 12 N 1.65605 * 107.21775 * 179.97438 * 9 7 2 13 13 C 1.39746 * 119.99884 * 67.63093 * 12 9 7 14 14 C 1.38879 * 120.08227 * 327.51402 * 13 12 9 15 15 C 1.38112 * 119.94049 * 179.73991 * 14 13 12 16 16 S 1.76203 * 119.95516 * 180.22913 * 15 14 13 17 17 O 1.42095 * 106.40106 * 23.83949 * 16 15 14 18 18 O 1.42106 * 106.40129 * 156.76169 * 16 15 14 19 19 O 1.52199 * 107.21531 * 270.29800 * 16 15 14 20 20 C 1.38291 * 120.09227 * 0.52825 * 15 14 13 21 21 C 1.38278 * 120.15903 * 359.72436 * 20 15 14 22 22 C 1.38207 * 120.05560 * 0.02562 * 21 20 15 23 23 Cl 1.73599 * 120.04572 * 179.97438 * 22 21 20 24 24 H 0.97004 * 119.99799 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00034 * 247.64149 * 12 9 7 26 26 H 1.08004 * 120.02975 * 359.97136 * 14 13 12 27 27 H 0.96702 * 113.99906 * 180.02562 * 19 16 15 28 28 H 1.07999 * 119.92193 * 179.70074 * 20 15 14 29 29 H 1.08002 * 119.97174 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1235 -2.7199 0.0005 10 8 0.4509 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2483 -3.9354 0.0005 13 6 3.0609 -4.1354 1.1197 14 6 3.4491 -3.0543 1.9003 15 6 4.2478 -3.2560 3.0088 16 16 4.7356 -1.8853 4.0029 17 8 3.7639 -0.8703 3.7913 18 8 5.0442 -2.4104 5.2868 19 8 6.0423 -1.3556 3.4298 20 6 4.6704 -4.5314 3.3362 21 6 4.2906 -5.6100 2.5588 22 6 3.4872 -5.4162 1.4511 23 17 3.0111 -6.7704 0.4749 24 1 -0.4850 0.8401 0.0004 25 1 2.3432 -4.5084 -0.7764 26 1 3.1236 -2.0572 1.6428 27 1 6.4012 -0.5948 3.9068 28 1 5.2989 -4.6853 4.2009 29 1 4.6227 -6.6047 2.8170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:15 Heat of formation + Delta-G solvation = -223.439288 kcal Electronic energy + Delta-G solvation = -23722.328962 eV Core-core repulsion = 19695.866406 eV Total energy + Delta-G solvation = -4026.462556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 340.972 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85415 -39.21684 -38.39492 -37.76251 -37.59060 -37.05469 -36.39379 -36.26205 -35.25374 -32.34459 -30.34374 -28.43614 -24.84535 -24.06153 -22.14071 -21.08458 -20.12885 -19.55695 -19.38730 -18.49163 -17.82909 -17.65999 -17.41094 -16.96917 -16.36844 -16.09208 -15.93076 -15.79542 -15.01330 -14.97649 -14.12437 -14.06020 -13.98295 -13.73968 -13.38251 -13.28064 -13.21582 -13.08393 -13.00530 -12.96511 -12.80503 -12.69641 -12.62123 -12.46304 -12.32225 -12.14204 -11.89301 -11.22596 -11.02261 -10.32649 -9.51710 -8.81605 -7.57491 -0.76447 -0.48748 -0.09319 0.11472 0.81503 1.34190 1.40747 1.50859 1.91084 2.18570 2.26537 2.43206 2.53679 2.56143 3.33506 3.47157 3.57613 3.85504 3.99134 4.05823 4.29672 4.36944 4.63079 4.75825 4.85457 5.00837 5.21190 5.32073 5.45109 5.77830 5.94566 6.70762 8.15460 Molecular weight = 340.97amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.007612 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.823050 B = 3677.314254 C = 6166.377832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.978 3.022 4 H -0.243 1.243 5 H -0.262 1.262 6 H -0.243 1.243 7 C -1.036 5.036 8 H 0.132 0.868 9 S 2.699 3.301 10 O -1.022 7.022 11 O -1.026 7.026 12 N -1.056 6.056 13 C 0.154 3.846 14 C -0.092 4.092 15 C -0.645 4.645 16 S 2.752 3.248 17 O -0.995 6.995 18 O -0.975 6.975 19 O -0.878 6.878 20 C -0.027 4.027 21 C -0.094 4.094 22 C -0.025 4.025 23 Cl -0.043 7.043 24 H 0.302 0.698 25 H 0.427 0.573 26 H 0.159 0.841 27 H 0.481 0.519 28 H 0.193 0.807 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.805 -6.709 6.863 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.136 4.136 3 Si 0.794 3.206 4 H -0.166 1.166 5 H -0.186 1.186 6 H -0.166 1.166 7 C -1.169 5.169 8 H 0.150 0.850 9 S 2.802 3.198 10 O -1.012 7.012 11 O -1.016 7.016 12 N -0.802 5.802 13 C 0.054 3.946 14 C -0.114 4.114 15 C -0.732 4.732 16 S 2.840 3.160 17 O -0.994 6.994 18 O -0.973 6.973 19 O -0.752 6.752 20 C -0.047 4.047 21 C -0.113 4.113 22 C -0.056 4.056 23 Cl -0.014 7.014 24 H 0.112 0.888 25 H 0.265 0.735 26 H 0.176 0.824 27 H 0.355 0.645 28 H 0.210 0.790 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 15.496 -6.731 6.936 18.263 hybrid contribution -0.037 0.467 -1.082 1.179 sum 15.459 -6.264 5.854 17.677 Atomic orbital electron populations 1.69960 1.08772 1.32747 1.40250 1.25961 0.95377 1.05200 0.87069 0.85339 0.79366 0.74481 0.81370 1.16611 1.18622 1.16592 1.30735 1.07262 1.11197 1.67743 0.85045 1.00811 0.72670 0.74236 0.72096 1.93369 1.73579 1.87725 1.46490 1.93346 1.73925 1.87963 1.46368 1.53699 1.52546 1.51595 1.22368 1.17399 0.94485 0.93128 0.89573 1.21602 0.95122 1.00401 0.94288 1.30563 1.12472 1.17884 1.12279 0.99687 0.71862 0.73069 0.71408 1.93681 1.63038 1.57345 1.85358 1.93599 1.83177 1.81196 1.39353 1.85486 1.58627 1.58539 1.72582 1.21374 0.95707 0.88886 0.98707 1.21523 0.95919 1.02380 0.91490 1.21340 1.01544 0.86600 0.96132 1.98372 1.90853 1.42218 1.69919 0.88787 0.73549 0.82388 0.64459 0.78982 0.79185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.53 13.19 21.45 0.28 -52.24 15 2 C 0.08 4.33 5.46 84.65 0.46 4.79 15 3 Si 0.98 40.71 29.54 68.60 2.03 42.74 15 4 H -0.24 -9.24 7.11 99.48 0.71 -8.53 15 5 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 6 H -0.24 -9.64 7.11 99.48 0.71 -8.93 15 7 C -1.04 -55.98 7.57 67.73 0.51 -55.46 15 8 H 0.13 6.24 6.91 -2.91 -0.02 6.22 15 9 S 2.70 146.83 4.63 -56.49 -0.26 146.57 15 10 O -1.02 -61.88 17.43 -128.00 -2.23 -64.11 15 11 O -1.03 -61.07 18.02 -128.00 -2.31 -63.38 15 12 N -1.06 -43.73 5.55 -51.30 -0.28 -44.02 15 13 C 0.15 5.75 6.20 38.21 0.24 5.99 15 14 C -0.09 -3.52 8.39 22.39 0.19 -3.33 15 15 C -0.65 -18.89 5.96 22.25 0.13 -18.75 15 16 S 2.75 68.47 5.96 -56.49 -0.34 68.13 15 17 O -1.00 -35.55 17.28 -118.78 -2.05 -37.60 15 18 O -0.97 -24.40 17.27 -118.78 -2.05 -26.45 15 19 O -0.88 -13.82 13.45 -118.26 -1.59 -15.41 15 20 C -0.03 -0.58 9.52 22.29 0.21 -0.37 15 21 C -0.09 -1.99 9.82 22.27 0.22 -1.77 15 22 C -0.02 -0.72 6.34 22.44 0.14 -0.57 15 23 Cl -0.04 -1.09 27.91 -2.72 -0.08 -1.17 15 24 H 0.30 16.08 8.31 -92.71 -0.77 15.31 15 25 H 0.43 15.15 8.11 -96.74 -0.79 14.36 15 26 H 0.16 6.95 4.05 -2.91 -0.01 6.94 15 27 H 0.48 1.73 9.03 -87.93 -0.79 0.94 15 28 H 0.19 2.55 7.61 -2.91 -0.02 2.53 15 29 H 0.19 2.32 8.06 -2.91 -0.02 2.30 15 Total: -1.00 -87.78 302.86 -7.08 -94.86 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.31 Total: 21.58 kcal Atomic # 6 Polarization: -71.59 SS G_CDS: 2.11 Total: -69.48 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: 0.00 Total: -96.26 kcal Atomic # 8 Polarization: -196.73 SS G_CDS: -10.23 Total: -206.96 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 215.30 SS G_CDS: -0.60 Total: 214.70 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -87.78 -7.08 -94.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.581 kcal (2) G-P(sol) polarization free energy of solvation -87.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds