Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34842 * 116.99868 * 2 1 4 4 O 1.21577 * 120.00027 * 359.97438 * 3 2 1 5 5 C 1.46852 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.33805 * 124.68696 * 180.02562 * 5 3 2 7 7 C 1.40369 * 115.55864 * 179.97438 * 6 5 3 8 8 C 1.41764 * 128.77885 * 179.71429 * 7 6 5 9 9 C 1.35875 * 120.63410 * 179.80742 * 8 7 6 10 10 C 1.38936 * 120.76631 * 0.50379 * 9 8 7 11 11 C 1.38008 * 120.10068 * 359.74069 * 10 9 8 12 12 N 1.39817 * 119.97202 * 179.97438 * 11 10 9 13 13 S 1.65602 * 120.00278 * 327.08546 * 12 11 10 14 14 O 1.42104 * 106.39928 * 181.27044 * 13 12 11 15 15 O 1.42101 * 106.40065 * 314.19242 * 13 12 11 16 16 C 1.76195 * 107.21729 * 67.73112 * 13 12 11 17 17 H 1.07998 * 120.00263 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00073 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00016 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00065 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47026 * 60.00328 * 20 18 16 22 22 H 1.48504 * 109.46631 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47252 * 299.99899 * 20 18 16 24 24 C 1.39868 * 112.60369 * 0.02562 * 7 6 5 25 25 S 1.75487 * 124.68530 * 359.96891 * 5 3 2 26 26 H 1.09000 * 109.46942 * 60.00774 * 1 2 3 27 27 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47637 * 300.00343 * 1 2 3 29 29 H 1.07992 * 122.22042 * 359.97438 * 6 5 3 30 30 H 1.07996 * 119.67826 * 0.30341 * 8 7 6 31 31 H 1.08003 * 119.62150 * 180.24260 * 9 8 7 32 32 H 1.08000 * 119.95389 * 179.71056 * 10 9 8 33 33 H 0.97011 * 119.99729 * 147.08770 * 12 11 10 34 34 H 0.96994 * 120.00402 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4019 2.2211 -0.0005 5 6 3.5306 1.2784 0.0006 6 6 4.2334 2.4170 0.0011 7 6 5.6291 2.2672 0.0022 8 6 6.6298 3.2713 -0.0026 9 6 7.9466 2.9364 0.0033 10 6 8.3412 1.6042 0.0036 11 6 7.3929 0.6016 0.0033 12 7 7.7929 -0.7382 0.0030 13 16 9.1835 -1.1870 -0.7762 14 8 9.2942 -2.5951 -0.6204 15 8 9.1584 -0.5448 -2.0436 16 6 10.5308 -0.4806 0.1128 17 1 10.3431 0.1171 0.9925 18 6 11.8247 -0.6918 -0.3139 19 7 12.0533 -1.4200 -1.3848 20 14 13.2530 0.0577 0.6283 21 1 13.2477 -0.4518 2.0231 22 1 14.5307 -0.3162 -0.0299 23 1 13.1163 1.5363 0.6408 24 6 6.0258 0.9260 0.0019 25 16 4.6035 -0.1103 0.0021 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.7584 3.3869 0.0008 30 1 6.3427 4.3124 -0.0028 31 1 8.6954 3.7147 0.0035 32 1 9.3915 1.3529 0.0036 33 1 7.2558 -1.4048 0.4593 34 1 12.9636 -1.5683 -1.6853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985558.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -149.383478 kcal Electronic energy + Delta-G solvation = -24280.493575 eV Core-core repulsion = 20395.508264 eV Total energy + Delta-G solvation = -3884.985311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.027 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59041 -40.86832 -37.97644 -37.57674 -37.06914 -36.31299 -35.41355 -35.05229 -31.26089 -30.16810 -28.82723 -28.30117 -25.79323 -24.24293 -22.97129 -21.54726 -20.72575 -20.11312 -19.51700 -18.61521 -18.11335 -17.96035 -17.73838 -17.54102 -16.98363 -16.18665 -16.12979 -15.85364 -15.53902 -15.32899 -15.11967 -14.76119 -14.36085 -14.02788 -13.95085 -13.59682 -13.17880 -13.05771 -13.03365 -12.91217 -12.71012 -12.64760 -12.56782 -12.33916 -12.17817 -12.01329 -11.91339 -11.83424 -11.73009 -11.22149 -10.98128 -10.33694 -9.69605 -8.81181 -8.56782 -7.54407 -0.94922 0.00729 0.19498 0.30162 0.71340 0.74897 1.38602 1.40099 1.49426 1.53757 1.63577 2.19745 2.55433 2.65500 2.67794 3.52399 3.54805 3.77278 3.80185 4.00097 4.06528 4.24408 4.30315 4.31245 4.38382 4.58445 4.62309 4.69557 4.80569 4.99203 5.10095 5.18264 5.25059 5.26498 5.50497 5.79684 5.85359 6.07035 6.43470 6.72470 8.17730 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.003260 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.350748 B = 8586.705650 C = 9462.862447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.546 3.454 4 O -0.515 6.515 5 C -0.237 4.237 6 C -0.007 4.007 7 C -0.081 4.081 8 C -0.077 4.077 9 C -0.085 4.085 10 C -0.162 4.162 11 C 0.189 3.811 12 N -1.062 6.062 13 S 2.704 3.296 14 O -1.033 7.033 15 O -1.023 7.023 16 C -1.030 5.030 17 H 0.134 0.866 18 C 0.075 3.925 19 N -0.890 5.890 20 Si 0.992 3.008 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.239 1.239 24 C -0.172 4.172 25 S 0.151 5.849 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.070 0.930 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.169 0.831 32 H 0.152 0.848 33 H 0.421 0.579 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 9.692 6.278 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.391 3.609 4 O -0.406 6.406 5 C -0.354 4.354 6 C -0.040 4.040 7 C -0.089 4.089 8 C -0.098 4.098 9 C -0.105 4.105 10 C -0.187 4.187 11 C 0.088 3.912 12 N -0.807 5.807 13 S 2.807 3.193 14 O -1.024 7.024 15 O -1.012 7.012 16 C -1.164 5.164 17 H 0.152 0.848 18 C -0.139 4.139 19 N -0.521 5.521 20 Si 0.809 3.191 21 H -0.176 1.176 22 H -0.192 1.192 23 H -0.163 1.163 24 C -0.292 4.292 25 S 0.419 5.581 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.089 0.911 29 H 0.201 0.799 30 H 0.194 0.806 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.256 0.744 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.797 7.710 5.235 18.341 hybrid contribution 0.772 0.970 0.674 1.411 sum -15.026 8.680 5.909 18.331 Atomic orbital electron populations 1.23677 0.73274 1.06158 1.03205 1.86597 1.26107 1.31162 1.83830 1.19705 0.86885 0.82041 0.72305 1.90861 1.66177 1.36374 1.47212 1.22662 0.94167 0.98951 1.19606 1.20445 0.91024 0.99674 0.92899 1.18302 0.93645 0.91804 1.05185 1.21204 0.90636 0.99716 0.98244 1.20925 0.97342 0.94816 0.97431 1.22096 1.00882 0.93983 1.01691 1.16851 0.90686 0.83482 1.00214 1.53739 1.44136 1.12946 1.69910 1.00657 0.72734 0.72396 0.73511 1.93341 1.86650 1.34808 1.87567 1.93357 1.87033 1.77474 1.43382 1.30735 1.08353 1.48884 1.28439 0.84821 1.26020 1.02906 0.91097 0.93860 1.69976 1.26233 1.33346 1.22560 0.85127 0.74789 0.80370 0.78772 1.17645 1.19227 1.16255 1.23086 0.96294 0.98767 1.11073 1.84265 0.91950 1.05496 1.76407 0.91288 0.84856 0.91102 0.79924 0.80632 0.81312 0.83114 0.74401 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.36 -7.96 10.38 -57.55 -0.60 -8.56 16 3 C 0.55 13.72 7.94 70.08 0.56 14.28 16 4 O -0.52 -14.09 16.52 19.58 0.32 -13.76 16 5 C -0.24 -6.12 6.32 23.52 0.15 -5.97 16 6 C -0.01 -0.16 9.79 21.78 0.21 0.05 16 7 C -0.08 -2.13 5.87 -21.49 -0.13 -2.26 16 8 C -0.08 -1.67 10.03 22.59 0.23 -1.44 16 9 C -0.08 -2.16 9.93 21.89 0.22 -1.95 16 10 C -0.16 -5.71 8.92 22.38 0.20 -5.51 16 11 C 0.19 7.08 6.22 38.37 0.24 7.32 16 12 N -1.06 -43.76 5.77 -50.84 -0.29 -44.05 16 13 S 2.70 142.80 4.63 -56.49 -0.26 142.54 16 14 O -1.03 -60.90 18.02 -128.00 -2.31 -63.21 16 15 O -1.02 -59.84 17.43 -128.00 -2.23 -62.07 16 16 C -1.03 -52.79 7.58 67.73 0.51 -52.28 16 17 H 0.13 6.00 6.89 -2.91 -0.02 5.98 16 18 C 0.08 3.92 5.46 84.65 0.46 4.39 16 19 N -0.89 -50.79 13.19 21.45 0.28 -50.50 16 20 Si 0.99 38.21 29.54 68.60 2.03 40.23 16 21 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 24 C -0.17 -5.56 6.43 23.22 0.15 -5.41 16 25 S 0.15 4.32 22.96 -56.49 -1.30 3.02 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.18 3.19 7.96 -2.91 -0.02 3.17 16 30 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.15 5.92 4.44 -2.91 -0.01 5.90 16 33 H 0.42 15.14 8.89 -96.73 -0.86 14.28 16 34 H 0.30 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -76.88 331.83 -0.03 -76.91 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.33 Total: 26.64 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 4.00 Total: -47.18 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -0.01 Total: -94.55 kcal Atomic # 8 Polarization: -142.79 SS G_CDS: -4.81 Total: -147.60 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 16 Polarization: 147.12 SS G_CDS: -1.56 Total: 145.56 kcal Total: -76.88 -0.03 -76.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985558.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.478 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds