Wall clock time and date at job start Sat Apr 11 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48497 * 109.47311 * 240.00334 * 3 2 1 5 5 H 1.48504 * 109.46981 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47391 * 119.99569 * 3 2 1 7 7 C 1.37875 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00244 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99863 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40165 * 66.46209 * 9 7 2 11 11 O 1.42096 * 106.39944 * 293.53641 * 9 7 2 12 12 N 1.65602 * 107.21460 * 179.97438 * 9 7 2 13 13 C 1.37991 * 120.00360 * 64.82570 * 12 9 7 14 14 C 1.35383 * 119.68203 * 173.74602 * 13 12 9 15 15 Cl 1.73599 * 119.55341 * 359.97438 * 14 13 12 16 16 C 1.46368 * 120.89050 * 179.71711 * 14 13 12 17 17 O 1.21635 * 120.00836 * 180.02562 * 16 14 13 18 18 C 1.48072 * 119.98096 * 0.50742 * 16 14 13 19 19 C 1.38866 * 120.75025 * 179.77058 * 18 16 14 20 20 C 1.38663 * 119.81431 * 179.72486 * 19 18 16 21 21 C 1.38146 * 120.45247 * 0.02562 * 20 19 18 22 22 C 1.38601 * 120.41555 * 0.02562 * 21 20 19 23 23 C 1.39018 * 119.76736 * 359.97438 * 22 21 20 24 24 C 1.47864 * 120.80848 * 180.02562 * 23 22 21 25 25 O 1.21425 * 120.20655 * 359.96204 * 24 23 22 26 26 H 0.97009 * 119.99818 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99563 * 244.81840 * 12 9 7 28 28 H 1.08001 * 120.09023 * 359.70691 * 19 18 16 29 29 H 1.08002 * 119.77116 * 180.02562 * 20 19 18 30 30 H 1.07998 * 119.79100 * 180.02562 * 21 20 19 31 31 H 1.07999 * 120.11691 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7949 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 3.0900 -4.0965 1.0820 14 6 3.9190 -5.1656 1.1328 15 17 3.9097 -6.3188 -0.1647 16 6 4.8271 -5.3593 2.2643 17 8 5.5655 -6.3254 2.2933 18 6 4.8390 -4.3844 3.3788 19 6 5.6905 -4.5551 4.4623 20 6 5.6897 -3.6272 5.4927 21 6 4.8467 -2.5336 5.4494 22 6 3.9902 -2.3499 4.3753 23 6 3.9802 -3.2721 3.3350 24 6 3.0763 -3.0984 2.1777 25 8 2.3287 -2.1432 2.1244 26 1 -0.4850 0.8401 0.0004 27 1 2.3153 -4.5341 -0.7597 28 1 6.3514 -5.4083 4.5025 29 1 6.3526 -3.7604 6.3349 30 1 4.8551 -1.8172 6.2576 31 1 3.3336 -1.4930 4.3461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:26 Heat of formation + Delta-G solvation = -99.318280 kcal Electronic energy + Delta-G solvation = -25295.000644 eV Core-core repulsion = 21274.309522 eV Total energy + Delta-G solvation = -4020.691122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 341.000 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88602 -39.07018 -38.20936 -36.80164 -35.64482 -35.46404 -34.28762 -33.23826 -32.76473 -31.21017 -29.65227 -26.36884 -25.96825 -23.75722 -23.00622 -21.28871 -19.67825 -18.78193 -18.25511 -17.46277 -16.89097 -16.36480 -15.92717 -15.52368 -15.33661 -15.03730 -14.78291 -14.45602 -14.25666 -14.17858 -14.03579 -13.93491 -13.46126 -12.95542 -12.33623 -12.22470 -12.07124 -11.67556 -11.43916 -11.38735 -11.28438 -11.14873 -10.96334 -10.72089 -10.57390 -10.50702 -9.94540 -9.82489 -9.32505 -9.23278 -9.16073 -9.06067 -8.27424 -6.84073 -5.37381 -0.17558 0.90462 1.11880 1.74444 2.11372 2.50529 2.87567 3.01693 3.05306 3.09798 3.29616 3.79924 3.82603 3.99109 4.47933 4.52828 4.59367 4.66196 4.91781 4.96240 5.05016 5.20741 5.30667 5.44491 5.52647 5.76991 5.94510 6.03053 6.13152 6.16850 6.28884 6.58782 7.02984 7.16486 7.31505 7.51069 7.73592 8.72654 10.11165 Molecular weight = 341.00amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.005941 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.239011 B = 4712.198095 C = 6383.309360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.136 3.864 3 Si 0.923 3.077 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.980 4.980 8 H 0.101 0.899 9 S 2.685 3.315 10 O -0.986 6.986 11 O -0.968 6.968 12 N -1.028 6.028 13 C 0.218 3.782 14 C -0.216 4.216 15 Cl -0.044 7.044 16 C 0.450 3.550 17 O -0.440 6.440 18 C -0.118 4.118 19 C -0.067 4.067 20 C -0.107 4.107 21 C -0.099 4.099 22 C -0.067 4.067 23 C -0.092 4.092 24 C 0.356 3.644 25 O -0.295 6.295 26 H 0.294 0.706 27 H 0.424 0.576 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.863 -4.871 8.846 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.082 4.082 3 Si 0.746 3.254 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.114 5.114 8 H 0.119 0.881 9 S 2.786 3.214 10 O -0.977 6.977 11 O -0.958 6.958 12 N -0.762 5.762 13 C 0.106 3.894 14 C -0.255 4.255 15 Cl -0.015 7.015 16 C 0.329 3.671 17 O -0.315 6.315 18 C -0.120 4.120 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.094 4.094 24 C 0.226 3.774 25 O -0.162 6.162 26 H 0.104 0.896 27 H 0.260 0.740 28 H 0.160 0.840 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.552 -4.857 8.742 13.829 hybrid contribution 0.902 0.710 -0.712 1.351 sum 10.454 -4.146 8.030 13.818 Atomic orbital electron populations 1.69860 1.06755 1.31117 1.39203 1.24648 0.94496 1.00572 0.88522 0.86154 0.79895 0.79413 0.79908 1.18811 1.19953 1.18642 1.30144 1.05482 1.10309 1.65450 0.88100 1.01831 0.72409 0.73750 0.73363 1.93426 1.71731 1.86933 1.45578 1.93435 1.71540 1.86357 1.44451 1.54825 1.48918 1.49424 1.23014 1.20295 0.88067 0.92574 0.88429 1.22754 1.08746 0.96961 0.97062 1.98324 1.97820 1.58446 1.46912 1.19596 0.80067 0.84079 0.83337 1.90627 1.35701 1.27688 1.77532 1.20239 0.98883 0.96054 0.96826 1.21302 0.96519 0.99001 0.91707 1.21416 0.98680 0.94006 0.98428 1.21434 0.94780 0.97633 0.97849 1.21458 0.97371 0.98146 0.91544 1.19990 0.97262 0.96142 0.96014 1.20443 0.85824 0.85322 0.85810 1.91220 1.28466 1.24921 1.71611 0.89584 0.73973 0.84014 0.84740 0.84573 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.52 13.19 55.43 0.73 -22.79 16 2 C 0.14 3.61 5.46 -17.82 -0.10 3.51 16 3 Si 0.92 19.70 29.54 -169.99 -5.02 14.68 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.98 -25.43 6.72 30.60 0.21 -25.22 16 8 H 0.10 2.39 7.76 -52.49 -0.41 1.98 16 9 S 2.69 68.52 4.56 -107.50 -0.49 68.03 16 10 O -0.99 -27.63 18.02 -57.17 -1.03 -28.66 16 11 O -0.97 -26.67 15.06 -67.31 -1.01 -27.68 16 12 N -1.03 -20.55 5.73 33.42 0.19 -20.35 16 13 C 0.22 4.02 6.64 -82.01 -0.54 3.48 16 14 C -0.22 -3.60 6.48 -37.33 -0.24 -3.85 16 15 Cl -0.04 -0.68 27.03 -51.86 -1.40 -2.08 16 16 C 0.45 7.01 7.11 -32.28 -0.23 6.78 16 17 O -0.44 -7.20 16.71 5.25 0.09 -7.11 16 18 C -0.12 -1.64 5.89 -104.74 -0.62 -2.26 16 19 C -0.07 -0.73 9.62 -39.19 -0.38 -1.10 16 20 C -0.11 -0.93 10.03 -39.46 -0.40 -1.33 16 21 C -0.10 -0.93 10.03 -39.48 -0.40 -1.32 16 22 C -0.07 -0.85 9.63 -39.16 -0.38 -1.23 16 23 C -0.09 -1.40 5.89 -104.78 -0.62 -2.01 16 24 C 0.36 6.71 6.78 -31.54 -0.21 6.50 16 25 O -0.30 -6.60 9.68 -19.48 -0.19 -6.79 16 26 H 0.29 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.42 7.42 7.29 -34.47 -0.25 7.17 16 28 H 0.14 1.34 7.69 -52.49 -0.40 0.94 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.15 1.89 7.70 -52.49 -0.40 1.48 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -33.18 305.98 -8.87 -42.05 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -1.45 Total: 4.15 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -3.90 Total: -18.06 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.92 Total: -43.14 kcal Atomic # 8 Polarization: -68.10 SS G_CDS: -2.14 Total: -70.25 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 68.52 SS G_CDS: -0.49 Total: 68.03 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.40 Total: -2.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.18 -8.87 -42.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.270 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds