Wall clock time and date at job start Sat Apr 11 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48502 * 109.46781 * 239.99870 * 3 2 1 5 5 H 1.48507 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47444 * 119.99486 * 3 2 1 7 7 C 1.37873 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00031 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47042 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46843 * 180.02562 * 10 9 7 12 12 C 1.35372 * 126.73002 * 125.27376 * 11 10 9 13 13 N 1.36113 * 106.04987 * 180.10311 * 12 11 10 14 14 C 1.40251 * 125.94372 * 179.90049 * 13 12 11 15 15 C 1.38847 * 120.06209 * 303.85929 * 14 13 12 16 16 C 1.38103 * 119.92809 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.07046 * 0.02562 * 16 15 14 18 18 C 1.38263 * 120.13002 * 359.97438 * 17 16 15 19 19 C 1.38144 * 120.06191 * 359.97438 * 18 17 16 20 20 S 1.76199 * 120.02977 * 180.02562 * 19 18 17 21 21 O 1.42099 * 106.40329 * 17.13067 * 20 19 18 22 22 O 1.42097 * 106.40279 * 150.05281 * 20 19 18 23 23 Cl 2.01998 * 107.21793 * 263.59218 * 20 19 18 24 24 N 1.28733 * 108.11413 * 359.63772 * 13 12 11 25 25 N 1.28601 * 110.23315 * 0.22971 * 24 13 12 26 26 H 0.97003 * 119.99770 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46851 * 60.00190 * 9 7 2 28 28 H 1.08996 * 109.46966 * 300.00104 * 9 7 2 29 29 H 1.09005 * 109.47480 * 59.99819 * 10 9 7 30 30 H 1.08998 * 109.46888 * 300.00114 * 10 9 7 31 31 H 1.08001 * 126.97386 * 359.96855 * 12 11 10 32 32 H 1.07997 * 120.03198 * 359.95295 * 15 14 13 33 33 H 1.08007 * 119.96341 * 180.02562 * 16 15 14 34 34 H 1.07994 * 119.93901 * 180.27411 * 17 16 15 35 35 H 1.07997 * 119.96840 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 -0.0001 12 6 1.6298 -5.9813 -0.8861 13 7 0.7509 -6.9444 -0.4956 14 6 0.5493 -8.1801 -1.1276 15 6 0.2091 -8.2260 -2.4729 16 6 0.0118 -9.4444 -3.0926 17 6 0.1522 -10.6178 -2.3745 18 6 0.4910 -10.5752 -1.0346 19 6 0.6907 -9.3595 -0.4096 20 16 1.1230 -9.3063 1.2977 21 8 1.5779 -10.6090 1.6372 22 8 1.9106 -8.1371 1.4759 23 17 -0.5830 -9.0088 2.3375 24 7 0.1407 -6.5261 0.5579 25 7 0.5593 -5.3530 0.8779 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6044 0.8905 30 1 2.8719 -3.6043 -0.8894 31 1 2.2997 -6.0177 -1.7325 32 1 0.0985 -7.3099 -3.0340 33 1 -0.2525 -9.4807 -4.1392 34 1 0.0018 -11.5695 -2.8622 35 1 0.6004 -11.4932 -0.4764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254055828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:51 Heat of formation + Delta-G solvation = 64.753494 kcal Electronic energy + Delta-G solvation = -24510.315732 eV Core-core repulsion = 20664.865143 eV Total energy + Delta-G solvation = -3845.450590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.25890 -40.04204 -38.23171 -36.91343 -36.48784 -35.19856 -33.78154 -32.34793 -31.98010 -30.40434 -29.31194 -25.37176 -24.83392 -24.07219 -22.06479 -21.75237 -20.74177 -20.28498 -18.93602 -18.39382 -17.69688 -17.23367 -16.29699 -16.06647 -15.87581 -15.30121 -15.18822 -14.62637 -14.39109 -13.96954 -13.41799 -13.35337 -13.07347 -12.97408 -12.89514 -12.50155 -12.41741 -12.23898 -12.14971 -12.09394 -11.69433 -11.66241 -11.09018 -10.92907 -10.81696 -10.56118 -10.47961 -10.29310 -9.86684 -9.60371 -9.42934 -9.08039 -8.63352 -8.27981 -5.93401 -3.96562 -1.59974 -0.23552 0.28763 1.43731 1.70016 2.06227 2.34131 2.68841 2.95907 3.24942 3.37561 3.42075 3.44374 3.92021 4.11300 4.31791 4.39285 4.47937 4.50671 4.72221 4.93805 5.05284 5.22716 5.31100 5.42149 5.44294 5.48236 5.65656 5.82083 6.40195 6.50734 6.67224 6.69890 7.05878 7.74358 7.90540 8.08221 8.45250 8.70324 9.10505 9.66839 11.17749 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.002947 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.254544 B = 9498.627117 C =10276.449161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.036 4.036 11 C 0.026 3.974 12 C -0.042 4.042 13 N -0.293 5.293 14 C 0.245 3.755 15 C -0.122 4.122 16 C -0.035 4.035 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.647 4.647 20 S 2.472 3.528 21 O -0.870 6.870 22 O -0.844 6.844 23 Cl -0.443 7.443 24 N -0.092 5.092 25 N -0.217 5.217 26 H 0.261 0.739 27 H 0.014 0.986 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -27.178 -7.894 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.075 4.075 11 C -0.108 4.108 12 C -0.187 4.187 13 N -0.083 5.083 14 C 0.152 3.848 15 C -0.143 4.143 16 C -0.054 4.054 17 C -0.147 4.147 18 C -0.021 4.021 19 C -0.740 4.740 20 S 2.564 3.436 21 O -0.868 6.868 22 O -0.842 6.842 23 Cl -0.442 7.442 24 N -0.069 5.069 25 N -0.086 5.086 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.209 0.791 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.303 -27.290 -6.056 27.956 hybrid contribution 0.997 1.043 -1.608 2.161 sum 0.693 -26.247 -7.665 27.352 Atomic orbital electron populations 1.69976 1.06056 1.26643 1.50525 1.25012 0.94814 0.99185 0.95352 0.86658 0.79547 0.83192 0.78573 1.20315 1.21378 1.20190 1.21190 0.92999 0.90932 1.50986 0.92545 1.19051 0.93677 0.90100 0.98037 1.20297 0.97693 0.87590 1.01929 1.22679 0.97500 0.98298 0.92346 1.23539 1.00275 0.89414 1.05479 1.44747 1.29085 1.12739 1.21761 1.16833 0.95060 0.80784 0.92121 1.21404 0.99775 1.00567 0.92523 1.21558 0.91851 0.91212 1.00737 1.21491 0.99823 0.99640 0.93790 1.21009 0.90112 0.95350 0.95667 1.29895 1.22452 0.98789 1.22828 1.09041 0.79534 0.77187 0.77880 1.93740 1.73613 1.37170 1.82272 1.93837 1.59189 1.47005 1.84153 1.99061 1.65689 1.96897 1.82565 1.78345 1.18818 1.09691 1.00096 1.74999 1.10056 1.02043 1.21467 0.92972 0.96750 0.95321 0.90718 0.91203 0.79148 0.82992 0.83188 0.83351 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.76 4.95 -27.88 -0.14 0.62 16 10 C -0.04 -0.75 5.73 -27.88 -0.16 -0.91 16 11 C 0.03 0.52 6.50 -82.77 -0.54 -0.02 16 12 C -0.04 -0.65 11.35 -16.67 -0.19 -0.83 16 13 N -0.29 -4.44 2.13 -10.47 -0.02 -4.46 16 14 C 0.25 2.72 6.04 -83.57 -0.50 2.21 16 15 C -0.12 -0.92 9.78 -39.41 -0.39 -1.31 16 16 C -0.03 -0.15 10.04 -39.61 -0.40 -0.55 16 17 C -0.13 -0.53 10.04 -39.55 -0.40 -0.92 16 18 C 0.00 -0.01 9.53 -39.61 -0.38 -0.39 16 19 C -0.65 -6.37 5.92 -39.41 -0.23 -6.60 16 20 S 2.47 30.14 5.41 -107.50 -0.58 29.56 16 21 O -0.87 -10.36 17.11 -57.17 -0.98 -11.34 16 22 O -0.84 -13.28 15.06 -57.17 -0.86 -14.14 16 23 Cl -0.44 -5.97 28.92 -51.86 -1.50 -7.47 16 24 N -0.09 -1.71 10.10 60.35 0.61 -1.10 16 25 N -0.22 -4.67 12.39 33.29 0.41 -4.26 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.07 1.29 8.12 -51.93 -0.42 0.86 16 31 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.15 0.19 8.06 -52.48 -0.42 -0.24 16 34 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 35 H 0.16 0.66 7.49 -52.49 -0.39 0.27 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -37.40 338.04 -9.16 -46.56 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: -3.32 Total: -6.32 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.73 Total: -22.26 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 1.74 Total: -36.43 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.84 Total: -25.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 30.14 SS G_CDS: -0.58 Total: 29.56 kcal Atomic # 17 Polarization: -5.97 SS G_CDS: -1.50 Total: -7.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.40 -9.16 -46.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254055828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.314 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds