Wall clock time and date at job start Sat Apr 11 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42107 * 110.54349 * 2 1 4 4 O 1.42095 * 110.54616 * 223.25105 * 2 1 3 5 5 C 1.76203 * 104.45000 * 111.62304 * 2 1 3 6 6 C 1.35132 * 125.61377 * 89.99883 * 5 2 1 7 7 C 1.40366 * 107.11315 * 180.02562 * 6 5 2 8 8 C 1.36547 * 106.70771 * 359.97438 * 7 6 5 9 9 C 1.46653 * 125.98296 * 179.97438 * 8 7 6 10 10 O 1.21688 * 120.00239 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99415 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99748 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47044 * 324.99648 * 12 11 9 14 14 C 1.50697 * 109.47091 * 205.00118 * 12 11 9 15 15 H 1.08002 * 120.00089 * 274.94363 * 14 12 11 16 16 C 1.37882 * 120.00468 * 94.93722 * 14 12 11 17 17 N 1.31511 * 120.00228 * 184.87602 * 16 14 12 18 18 Si 1.86800 * 119.99469 * 4.88269 * 16 14 12 19 19 H 1.48496 * 109.47623 * 84.80738 * 18 16 14 20 20 H 1.48504 * 109.46668 * 204.80871 * 18 16 14 21 21 H 1.48502 * 109.47020 * 324.80315 * 18 16 14 22 22 C 1.52994 * 109.47484 * 84.99826 * 12 11 9 23 23 F 1.39905 * 109.46892 * 54.93851 * 22 12 11 24 24 F 1.39894 * 109.47277 * 174.93964 * 22 12 11 25 25 F 1.39906 * 109.47241 * 294.93965 * 22 12 11 26 26 O 1.33928 * 125.61817 * 270.29410 * 5 2 1 27 27 H 1.09005 * 109.47106 * 308.37557 * 1 2 3 28 28 H 1.08997 * 109.46642 * 68.37698 * 1 2 3 29 29 H 1.08994 * 109.46779 * 188.37528 * 1 2 3 30 30 H 1.08002 * 126.43872 * 0.02562 * 6 5 2 31 31 H 1.07997 * 126.64147 * 179.97438 * 7 6 5 32 32 H 0.97003 * 120.00637 * 0.02562 * 11 9 8 33 33 H 0.97001 * 120.00230 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4500 -1.9308 1.8898 7 6 2.7816 -1.9918 3.2523 8 6 2.7712 -0.7078 3.7167 9 6 3.0596 -0.2864 5.0915 10 8 3.3400 -1.1163 5.9362 11 7 3.0139 1.0201 5.4193 12 6 3.3025 1.4412 6.7926 13 1 2.9318 0.6889 7.4888 14 6 2.6231 2.7580 7.0674 15 1 3.1077 3.6834 6.7928 16 6 1.3829 2.7816 7.6694 17 7 0.7478 3.9229 7.8224 18 14 0.6049 1.1922 8.2677 19 1 1.1067 0.8773 9.6294 20 1 -0.8714 1.3483 8.3080 21 1 0.9608 0.0875 7.3413 22 6 4.8137 1.6001 6.9704 23 9 5.3075 2.4795 6.0007 24 9 5.0821 2.1123 8.2443 25 9 5.4336 0.3539 6.8288 26 8 2.4429 0.1045 2.6908 27 1 -0.3633 0.6380 0.8057 28 1 -0.3632 0.3787 -0.9554 29 1 -0.3633 -1.0167 0.1497 30 1 2.3674 -2.7672 1.2115 31 1 3.0022 -2.8819 3.8228 32 1 2.7900 1.6816 4.7461 33 1 -0.1246 3.9396 8.2462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361954800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:05 Heat of formation + Delta-G solvation = -237.860811 kcal Electronic energy + Delta-G solvation = -28175.629091 eV Core-core repulsion = 23302.197505 eV Total energy + Delta-G solvation = -4873.431587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.042 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.15667 -46.68078 -46.63031 -42.87150 -39.12480 -37.49061 -36.33703 -35.14031 -33.42576 -32.72569 -30.83774 -29.93307 -28.98706 -25.08784 -24.13239 -22.34734 -21.33844 -20.31640 -19.62605 -18.89105 -18.15264 -17.64817 -17.30443 -17.07126 -16.81588 -16.57818 -16.09219 -16.06103 -15.48678 -14.63723 -14.15710 -14.10406 -13.73963 -13.62592 -13.58253 -13.55870 -13.50831 -13.23481 -13.13043 -13.06879 -12.84009 -12.78995 -12.67394 -12.49026 -12.37764 -11.96361 -11.83004 -11.39090 -11.28768 -10.88182 -10.38864 -10.31019 -10.11270 -9.92828 -9.28573 -9.10756 -8.69798 -6.65307 -4.81709 -0.44756 0.58670 1.85047 2.16713 2.69054 3.00569 3.09447 3.16317 3.23326 3.39251 3.46770 3.81358 3.90839 3.97824 4.37927 4.53549 4.57953 4.67221 4.77424 5.05255 5.11102 5.14813 5.26178 5.27765 5.39008 5.50705 5.96144 6.08100 6.40163 6.73473 6.80419 7.67609 7.99820 8.35381 8.43347 8.89016 10.42677 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.003951 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.279819 B = 7084.370825 C = 7653.418793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.531 3.469 3 O -0.915 6.915 4 O -0.919 6.919 5 C -0.557 4.557 6 C -0.097 4.097 7 C -0.159 4.159 8 C -0.002 4.002 9 C 0.577 3.423 10 O -0.513 6.513 11 N -0.693 5.693 12 C 0.199 3.801 13 H 0.095 0.905 14 C -0.536 4.536 15 H 0.097 0.903 16 C 0.101 3.899 17 N -0.852 5.852 18 Si 0.866 3.134 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.256 1.256 22 C 0.439 3.561 23 F -0.189 7.189 24 F -0.178 7.178 25 F -0.196 7.196 26 O -0.103 6.103 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.409 0.591 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -9.276 -13.000 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.703 3.297 3 O -0.912 6.912 4 O -0.916 6.916 5 C -0.688 4.688 6 C -0.117 4.117 7 C -0.180 4.180 8 C -0.059 4.059 9 C 0.361 3.639 10 O -0.391 6.391 11 N -0.345 5.345 12 C 0.096 3.904 13 H 0.112 0.888 14 C -0.574 4.574 15 H 0.115 0.885 16 C -0.110 4.110 17 N -0.483 5.483 18 Si 0.691 3.309 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.180 1.180 22 C 0.383 3.617 23 F -0.171 7.171 24 F -0.160 7.160 25 F -0.177 7.177 26 O 0.004 5.996 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.191 0.809 31 H 0.188 0.812 32 H 0.246 0.754 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.336 -9.138 -12.846 15.937 hybrid contribution -0.763 -0.995 0.730 1.451 sum -3.099 -10.133 -12.116 16.096 Atomic orbital electron populations 1.30190 1.24132 1.12576 1.12607 1.04999 0.78318 0.74539 0.71803 1.93639 1.77324 1.35569 1.84695 1.93638 1.78128 1.62559 1.57320 1.35626 1.22321 1.00773 1.10031 1.21914 0.97605 0.95843 0.96366 1.22143 1.03785 0.97475 0.94597 1.23368 1.02723 0.90360 0.89448 1.17051 0.78687 0.84647 0.83521 1.90876 1.48802 1.52315 1.47075 1.47711 1.66644 1.05999 1.14099 1.20170 0.86179 1.00713 0.83296 0.88788 1.20735 1.04235 0.90041 1.42356 0.88462 1.25015 0.95929 0.96796 0.93264 1.69847 1.14261 1.25761 1.38478 0.86960 0.79195 0.83682 0.81081 1.18703 1.20258 1.18012 1.21577 0.93628 0.72828 0.73633 1.93092 1.89993 1.70125 1.63881 1.93119 1.94987 1.87311 1.40541 1.93150 1.85869 1.43162 1.95540 1.84241 1.65201 1.35215 1.14941 0.84200 0.84315 0.84672 0.80938 0.81166 0.75398 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.90 10.80 101.05 1.09 -1.81 16 2 S 2.53 22.81 5.95 -107.50 -0.64 22.17 16 3 O -0.91 -12.09 17.95 -58.41 -1.05 -13.14 16 4 O -0.92 -10.01 17.70 -57.54 -1.02 -11.03 16 5 C -0.56 -6.69 6.97 29.63 0.21 -6.49 16 6 C -0.10 -1.08 10.51 -39.89 -0.42 -1.50 16 7 C -0.16 -2.18 10.62 -39.39 -0.42 -2.60 16 8 C 0.00 -0.03 7.13 -36.80 -0.26 -0.29 16 9 C 0.58 11.40 7.44 -12.86 -0.10 11.30 16 10 O -0.51 -11.19 15.43 5.20 0.08 -11.11 16 11 N -0.69 -14.16 4.90 -56.25 -0.28 -14.43 16 12 C 0.20 4.49 1.71 -69.08 -0.12 4.37 16 13 H 0.09 2.20 4.73 -51.93 -0.25 1.96 16 14 C -0.54 -13.34 8.52 -34.44 -0.29 -13.63 16 15 H 0.10 2.62 8.00 -52.49 -0.42 2.20 16 16 C 0.10 2.56 5.47 -17.82 -0.10 2.46 16 17 N -0.85 -22.66 13.96 55.43 0.77 -21.89 16 18 Si 0.87 19.28 26.99 -169.99 -4.59 14.70 16 19 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.26 -5.72 6.82 56.52 0.39 -5.34 16 22 C 0.44 9.65 2.83 37.15 0.11 9.76 16 23 F -0.19 -4.08 16.93 2.25 0.04 -4.04 16 24 F -0.18 -3.95 16.89 2.25 0.04 -3.91 16 25 F -0.20 -4.24 15.83 2.25 0.04 -4.21 16 26 O -0.10 -1.57 10.40 5.01 0.05 -1.52 16 27 H 0.14 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.41 7.73 8.35 -40.82 -0.34 7.39 16 33 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -33.46 325.89 -4.21 -37.68 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.27 Total: 4.25 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.30 Total: 1.57 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.50 Total: -36.32 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.93 Total: -36.80 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 0.11 Total: -12.16 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.59 Total: 14.70 kcal Atomic # 16 Polarization: 22.81 SS G_CDS: -0.64 Total: 22.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.46 -4.21 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361954800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.184 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds