Wall clock time and date at job start Sat Apr 11 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42106 * 110.54376 * 2 1 4 4 O 1.42102 * 110.54363 * 223.24477 * 2 1 3 5 5 C 1.76199 * 104.45125 * 111.61984 * 2 1 3 6 6 C 1.35133 * 125.61273 * 90.00027 * 5 2 1 7 7 C 1.40368 * 107.11677 * 180.02562 * 6 5 2 8 8 C 1.36546 * 106.70472 * 0.02562 * 7 6 5 9 9 C 1.46662 * 125.98532 * 179.97438 * 8 7 6 10 10 O 1.21692 * 120.00243 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99668 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99783 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99932 * 12 11 9 14 14 C 1.50697 * 109.46896 * 154.99772 * 12 11 9 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 12 11 16 16 C 1.37875 * 119.99907 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00219 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00146 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47204 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46821 * 120.00394 * 18 16 14 21 21 H 1.48501 * 109.47152 * 240.00115 * 18 16 14 22 22 C 1.52997 * 109.47007 * 274.99983 * 12 11 9 23 23 F 1.39905 * 109.47157 * 299.99894 * 22 12 11 24 24 F 1.39900 * 109.47010 * 180.02562 * 22 12 11 25 25 F 1.39897 * 109.47422 * 59.99976 * 22 12 11 26 26 O 1.33926 * 125.62302 * 270.29634 * 5 2 1 27 27 H 1.09005 * 109.46737 * 308.37643 * 1 2 3 28 28 H 1.08996 * 109.47181 * 68.37666 * 1 2 3 29 29 H 1.09001 * 109.46914 * 188.38078 * 1 2 3 30 30 H 1.07996 * 126.44480 * 0.02562 * 6 5 2 31 31 H 1.07998 * 126.65047 * 179.97438 * 7 6 5 32 32 H 0.96997 * 119.99943 * 359.97438 * 11 9 8 33 33 H 0.96997 * 120.00148 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6287 1.5862 6 6 2.4501 -1.9307 1.8898 7 6 2.7817 -1.9917 3.2524 8 6 2.7702 -0.7078 3.7170 9 6 3.0581 -0.2863 5.0920 10 8 3.3383 -1.1162 5.9367 11 7 3.0123 1.0202 5.4198 12 6 3.2993 1.4412 6.7933 13 1 4.0698 0.7971 7.2173 14 6 3.7833 2.8684 6.7905 15 1 3.8681 3.4079 5.8588 16 6 4.1167 3.4856 7.9774 17 7 4.0130 2.8287 9.1120 18 14 4.7159 5.2549 7.9740 19 1 4.7424 5.7659 6.5800 20 1 3.7978 6.0899 8.7895 21 1 6.0833 5.3155 8.5500 22 6 2.0264 1.3359 7.6356 23 9 1.0375 2.1626 7.0915 24 9 2.3004 1.7385 8.9471 25 9 1.5771 0.0111 7.6382 26 8 2.4429 0.1045 2.6908 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1498 30 1 2.3674 -2.7671 1.2117 31 1 3.0024 -2.8818 3.8229 32 1 2.7892 1.6817 4.7463 33 1 4.2479 3.2628 9.9470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361954801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:09 Heat of formation + Delta-G solvation = -241.920218 kcal Electronic energy + Delta-G solvation = -28148.579070 eV Core-core repulsion = 23274.971454 eV Total energy + Delta-G solvation = -4873.607616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.042 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.49168 -48.12591 -47.79037 -43.94518 -40.66907 -38.28563 -37.14241 -36.77903 -34.73017 -34.31499 -31.94075 -30.41656 -30.01983 -26.69620 -25.43671 -23.50467 -22.99856 -21.76538 -20.55899 -20.00756 -19.10174 -18.95139 -18.75914 -18.52561 -17.96398 -17.73790 -17.03415 -16.86513 -16.79098 -16.35549 -15.65941 -15.27411 -15.05110 -14.98941 -14.75719 -14.54000 -14.37218 -14.34212 -14.24905 -14.09708 -13.97977 -13.95750 -13.93755 -13.29270 -13.18796 -13.15037 -12.85582 -12.74518 -12.68253 -12.28643 -12.02071 -11.64641 -11.55985 -11.36802 -10.75726 -10.47994 -10.20084 -8.27077 -6.58374 -1.10263 -0.53261 0.82654 1.23069 1.44455 1.46353 1.58859 1.69987 1.83691 2.07261 2.34730 2.44910 2.84109 2.88202 3.19593 3.50531 3.63096 3.71227 3.76566 4.08703 4.10231 4.14227 4.23391 4.30248 4.58263 4.75525 4.98867 4.99521 5.08837 5.33792 5.47588 5.57875 6.34924 6.45826 6.84555 7.14435 8.65886 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.003455 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.339481 B = 8102.363677 C = 8895.118231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.612 4.612 2 S 2.536 3.464 3 O -0.964 6.964 4 O -0.940 6.940 5 C -0.547 4.547 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.045 4.045 9 C 0.586 3.414 10 O -0.540 6.540 11 N -0.692 5.692 12 C 0.248 3.752 13 H 0.059 0.941 14 C -0.565 4.565 15 H 0.090 0.910 16 C 0.019 3.981 17 N -0.871 5.871 18 Si 0.983 3.017 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.276 1.276 22 C 0.416 3.584 23 F -0.201 7.201 24 F -0.146 7.146 25 F -0.217 7.217 26 O -0.120 6.120 27 H 0.150 0.850 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.214 0.786 31 H 0.183 0.817 32 H 0.417 0.583 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -6.355 -17.611 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.768 4.768 2 S 2.710 3.290 3 O -0.962 6.962 4 O -0.937 6.937 5 C -0.675 4.675 6 C -0.113 4.113 7 C -0.161 4.161 8 C -0.100 4.100 9 C 0.372 3.628 10 O -0.419 6.419 11 N -0.342 5.342 12 C 0.141 3.859 13 H 0.077 0.923 14 C -0.601 4.601 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.504 5.504 18 Si 0.807 3.193 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.201 1.201 22 C 0.360 3.640 23 F -0.183 7.183 24 F -0.127 7.127 25 F -0.199 7.199 26 O -0.014 6.014 27 H 0.168 0.832 28 H 0.187 0.813 29 H 0.183 0.817 30 H 0.230 0.770 31 H 0.200 0.800 32 H 0.253 0.747 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.025 -6.363 -17.284 20.090 hybrid contribution -0.244 0.467 1.261 1.367 sum -8.269 -5.896 -16.023 18.970 Atomic orbital electron populations 1.30006 1.16823 1.15133 1.14794 1.05076 0.80804 0.72877 0.70275 1.93581 1.80154 1.37628 1.84797 1.93607 1.80386 1.62555 1.57193 1.36450 1.20174 1.01191 1.09663 1.22365 0.96585 0.96764 0.95556 1.22485 1.01114 0.96658 0.95829 1.22580 1.07601 0.91520 0.88327 1.17014 0.77696 0.83149 0.84911 1.90877 1.49676 1.52556 1.48785 1.45960 1.68400 1.07168 1.12636 1.19547 0.88830 0.99366 0.78122 0.92293 1.21207 1.48144 0.95181 0.95612 0.89193 1.25949 0.94482 1.03731 0.94487 1.70506 1.42327 1.38671 0.98925 0.85104 0.77820 0.77422 0.78981 1.18257 1.20362 1.20092 1.23159 0.87387 0.71421 0.82066 1.92999 1.65765 1.73268 1.86283 1.93391 1.92517 1.89491 1.37349 1.93065 1.91405 1.38586 1.96834 1.84193 1.65983 1.35761 1.15440 0.83188 0.81302 0.81696 0.76953 0.79960 0.74651 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -1.78 10.80 113.37 1.22 -0.55 16 2 S 2.54 36.77 5.95 -56.49 -0.34 36.43 16 3 O -0.96 -23.48 17.95 -126.82 -2.28 -25.76 16 4 O -0.94 -17.36 17.70 -127.65 -2.26 -19.62 16 5 C -0.55 -11.47 6.97 67.10 0.47 -11.00 16 6 C -0.09 -1.75 10.51 22.07 0.23 -1.51 16 7 C -0.14 -3.56 10.62 22.39 0.24 -3.32 16 8 C -0.04 -1.44 7.13 24.08 0.17 -1.27 16 9 C 0.59 23.84 7.32 86.44 0.63 24.47 16 10 O -0.54 -25.09 15.44 -4.32 -0.07 -25.16 16 11 N -0.69 -29.22 4.98 -450.09 -2.24 -31.46 16 12 C 0.25 12.39 2.21 44.24 0.10 12.49 16 13 H 0.06 3.31 7.58 -2.39 -0.02 3.30 16 14 C -0.56 -28.63 8.47 25.60 0.22 -28.41 16 15 H 0.09 4.30 7.74 -2.91 -0.02 4.27 16 16 C 0.02 0.99 5.20 84.65 0.44 1.43 16 17 N -0.87 -47.40 9.50 21.45 0.20 -47.20 16 18 Si 0.98 40.50 29.54 68.60 2.03 42.53 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 22 C 0.42 21.20 2.81 71.98 0.20 21.40 16 23 F -0.20 -9.72 16.94 44.97 0.76 -8.96 16 24 F -0.15 -8.08 12.91 44.97 0.58 -7.50 16 25 F -0.22 -10.86 15.68 44.97 0.70 -10.15 16 26 O -0.12 -3.43 10.40 -4.96 -0.05 -3.49 16 27 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.17 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.42 15.63 8.29 -92.71 -0.77 14.86 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -77.10 322.78 1.40 -75.69 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.44 Total: 10.91 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 3.92 Total: 13.72 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.04 Total: -78.66 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -4.65 Total: -74.02 kcal Atomic # 9 Polarization: -28.65 SS G_CDS: 2.05 Total: -26.61 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 36.77 SS G_CDS: -0.34 Total: 36.43 kcal Total: -77.10 1.40 -75.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361954801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.228 kcal (2) G-P(sol) polarization free energy of solvation -77.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds