Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48496 * 109.47344 * 239.99710 * 3 2 1 5 5 H 1.48501 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46792 * 120.00116 * 3 2 1 7 7 C 1.39942 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00206 * 197.86224 * 7 2 1 9 9 C 1.41396 * 120.00046 * 17.85562 * 7 2 1 10 10 C 1.40738 * 120.24068 * 204.38337 * 9 7 2 11 11 C 1.37606 * 119.77203 * 179.77076 * 10 9 7 12 12 C 1.38643 * 120.26031 * 0.50183 * 11 10 9 13 13 S 1.76200 * 119.75538 * 179.76332 * 12 11 10 14 14 O 1.42102 * 106.40258 * 1.19094 * 13 12 11 15 15 O 1.42096 * 106.40476 * 228.26972 * 13 12 11 16 16 N 1.65603 * 107.21608 * 114.72816 * 13 12 11 17 17 C 1.46497 * 119.99941 * 65.00005 * 16 13 12 18 18 C 1.50700 * 109.47253 * 165.00139 * 17 16 13 19 19 C 1.41378 * 126.57909 * 89.99634 * 18 17 16 20 20 C 1.34520 * 106.83722 * 179.73602 * 19 18 17 21 21 O 1.34301 * 108.42417 * 0.26758 * 20 19 18 22 22 C 1.34308 * 109.47581 * 359.97438 * 21 20 19 23 23 C 1.38730 * 120.48757 * 359.49328 * 12 11 10 24 24 Cl 1.73594 * 119.89018 * 180.27433 * 23 12 11 25 25 C 1.37752 * 120.21939 * 0.25061 * 23 12 11 26 26 H 0.97006 * 120.00206 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.11546 * 0.04003 * 10 9 7 28 28 H 1.07998 * 119.86903 * 180.27087 * 11 10 9 29 29 H 0.96999 * 119.99887 * 245.00361 * 16 13 12 30 30 H 1.08997 * 109.47082 * 45.00077 * 17 16 13 31 31 H 1.09003 * 109.47399 * 285.00294 * 17 16 13 32 32 H 1.07999 * 126.58144 * 0.02562 * 19 18 17 33 33 H 1.08005 * 125.78808 * 180.23052 * 20 19 18 34 34 H 1.07994 * 125.79207 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.13213 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3765 10 6 1.8260 -3.6500 0.0822 11 6 1.1774 -4.8066 -0.2858 12 6 0.0670 -4.7516 -1.1141 13 16 -0.7495 -6.2412 -1.5821 14 8 -0.0559 -7.2993 -0.9350 15 8 -0.9281 -6.1756 -2.9902 16 7 -2.2651 -6.1995 -0.9160 17 6 -3.2287 -5.1853 -1.3510 18 6 -4.6097 -5.5738 -0.8895 19 6 -5.2186 -5.2209 0.3366 20 6 -6.4464 -5.7706 0.3343 21 8 -6.6101 -6.4388 -0.8191 22 6 -5.4982 -6.3257 -1.5639 23 6 -0.4094 -3.5320 -1.5726 24 17 -1.8053 -3.4807 -2.6032 25 6 0.2213 -2.3615 -1.2123 26 1 -0.4851 0.8401 0.0004 27 1 2.6930 -3.6960 0.7245 28 1 1.5371 -5.7611 0.0689 29 1 -2.5148 -6.8465 -0.2379 30 1 -3.2156 -5.1145 -2.4386 31 1 -2.9599 -4.2205 -0.9208 32 1 -4.7836 -4.6209 1.1221 33 1 -7.1764 -5.6889 1.1261 34 1 -5.3450 -6.7612 -2.5402 35 1 -0.1505 -1.4128 -1.5704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364766030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = -41.570302 kcal Electronic energy + Delta-G solvation = -24761.689958 eV Core-core repulsion = 20879.336071 eV Total energy + Delta-G solvation = -3882.353887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.032 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55334 -37.91863 -36.65088 -35.90946 -35.43411 -35.10963 -34.14560 -32.36046 -30.36087 -29.62488 -29.47364 -26.07414 -25.67685 -21.85843 -21.58592 -21.35739 -20.55986 -18.92328 -17.90615 -17.77475 -17.12750 -16.49175 -16.02656 -15.68987 -15.56937 -14.69507 -14.59328 -14.50842 -14.06377 -13.66594 -13.39452 -12.98502 -12.79273 -12.72699 -12.54644 -12.31196 -11.97105 -11.60192 -11.56019 -11.41649 -11.36337 -11.30522 -11.10855 -10.64619 -10.49303 -10.14802 -10.06278 -9.82294 -9.64399 -9.46864 -8.96754 -8.59283 -8.14109 -7.74503 -7.29934 -4.97942 1.18086 1.75766 2.01620 2.56303 2.61990 2.79945 2.82927 2.86990 2.89588 3.11223 3.55785 3.79296 4.07697 4.44553 4.76491 4.86355 5.07685 5.13341 5.23371 5.57912 5.62781 5.82805 5.91381 6.07489 6.20415 6.23940 6.37134 6.48835 6.51637 6.63620 6.77207 6.96397 7.08510 7.13857 7.28492 7.38291 7.54411 7.72795 8.04115 8.30530 8.37355 9.60299 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.003961 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.865042 B = 7066.595343 C = 8206.522109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.093 0.907 9 C 0.142 3.858 10 C -0.237 4.237 11 C 0.012 3.988 12 C -0.791 4.791 13 S 2.698 3.302 14 O -0.986 6.986 15 O -0.970 6.970 16 N -1.118 6.118 17 C 0.182 3.818 18 C -0.187 4.187 19 C -0.197 4.197 20 C -0.051 4.051 21 O -0.180 6.180 22 C -0.027 4.027 23 C 0.069 3.931 24 Cl -0.099 7.099 25 C -0.167 4.167 26 H 0.293 0.707 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.411 0.589 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.201 0.799 34 H 0.204 0.796 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 -3.629 0.908 9.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.153 4.153 3 Si 0.743 3.257 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.111 0.889 9 C 0.137 3.863 10 C -0.257 4.257 11 C -0.009 4.009 12 C -0.886 4.886 13 S 2.794 3.206 14 O -0.977 6.977 15 O -0.960 6.960 16 N -0.876 5.876 17 C 0.056 3.944 18 C -0.190 4.190 19 C -0.216 4.216 20 C -0.118 4.118 21 O -0.075 6.075 22 C -0.096 4.096 23 C 0.041 3.959 24 Cl -0.070 7.070 25 C -0.188 4.188 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.244 0.756 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.168 0.832 33 H 0.218 0.782 34 H 0.220 0.780 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.804 -4.172 0.070 9.742 hybrid contribution 0.251 1.398 0.816 1.638 sum -8.553 -2.774 0.886 9.035 Atomic orbital electron populations 1.69779 1.07989 1.30994 1.29196 1.26197 0.94974 1.02410 0.91751 0.86128 0.80189 0.78739 0.80618 1.18154 1.19725 1.18389 1.19970 0.98645 0.90928 1.35419 0.88880 1.17714 0.89478 0.92554 0.86518 1.21109 1.04568 0.92436 1.07616 1.20190 0.91344 0.98028 0.91298 1.29085 1.17620 1.14745 1.27156 1.01185 0.71822 0.73918 0.73646 1.93483 1.72382 1.54740 1.77047 1.93533 1.85414 1.87517 1.29521 1.55677 1.30529 1.43703 1.57642 1.20444 0.82945 0.91319 0.99666 1.20710 0.98299 1.03688 0.96299 1.21851 0.95336 1.05152 0.99291 1.23991 0.99375 0.99269 0.89141 1.84062 1.37843 1.59152 1.26463 1.24015 0.84685 1.02704 0.98183 1.20078 0.88400 0.94553 0.92883 1.98310 1.41605 1.98456 1.68623 1.21286 0.99567 0.95822 1.02089 0.89514 0.87501 0.86433 0.75572 0.89417 0.89520 0.83176 0.78241 0.77981 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.02 10.95 55.55 0.61 -16.41 16 2 C 0.07 1.52 5.14 -17.34 -0.09 1.43 16 3 Si 0.92 16.09 29.60 -169.99 -5.03 11.06 16 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 5 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 6 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 7 C -0.42 -9.77 9.05 -37.74 -0.34 -10.11 16 8 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.14 3.41 5.57 -106.83 -0.60 2.81 16 10 C -0.24 -5.33 9.79 -38.87 -0.38 -5.71 16 11 C 0.01 0.25 9.52 -39.66 -0.38 -0.12 16 12 C -0.79 -17.24 5.91 -39.25 -0.23 -17.47 16 13 S 2.70 52.71 5.44 -107.50 -0.58 52.12 16 14 O -0.99 -20.69 16.94 -57.17 -0.97 -21.66 16 15 O -0.97 -20.71 15.95 -57.17 -0.91 -21.63 16 16 N -1.12 -17.95 5.99 -11.66 -0.07 -18.02 16 17 C 0.18 2.84 4.61 -5.20 -0.02 2.81 16 18 C -0.19 -2.54 5.56 -104.74 -0.58 -3.12 16 19 C -0.20 -2.42 10.87 -39.70 -0.43 -2.85 16 20 C -0.05 -0.53 12.09 29.42 0.36 -0.17 16 21 O -0.18 -2.12 10.65 5.70 0.06 -2.05 16 22 C -0.03 -0.32 12.01 29.42 0.35 0.03 16 23 C 0.07 1.55 6.08 -39.58 -0.24 1.31 16 24 Cl -0.10 -1.93 20.52 -51.86 -1.06 -2.99 16 25 C -0.17 -3.99 8.47 -38.84 -0.33 -4.32 16 26 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 27 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 28 H 0.12 2.33 7.31 -52.49 -0.38 1.95 16 29 H 0.41 5.73 8.64 -34.47 -0.30 5.43 16 30 H 0.09 1.40 5.86 -51.93 -0.30 1.10 16 31 H 0.09 1.45 6.14 -51.93 -0.32 1.13 16 32 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.20 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.13 3.25 6.16 -52.48 -0.32 2.93 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -28.66 324.58 -8.85 -37.51 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -2.87 Total: 12.66 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: -2.92 Total: -35.47 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.54 Total: -34.43 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.82 Total: -45.34 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.58 Total: 52.12 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -1.06 Total: -2.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.66 -8.85 -37.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364766030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.060 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds