Wall clock time and date at job start Sat Apr 11 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48496 * 109.47344 * 239.99710 * 3 2 1 5 5 H 1.48501 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46792 * 120.00116 * 3 2 1 7 7 C 1.39942 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00206 * 197.86224 * 7 2 1 9 9 C 1.41396 * 120.00046 * 17.85562 * 7 2 1 10 10 C 1.40738 * 120.24068 * 204.38337 * 9 7 2 11 11 C 1.37606 * 119.77203 * 179.77076 * 10 9 7 12 12 C 1.38643 * 120.26031 * 0.50183 * 11 10 9 13 13 S 1.76200 * 119.75538 * 179.76332 * 12 11 10 14 14 O 1.42102 * 106.40258 * 1.19094 * 13 12 11 15 15 O 1.42096 * 106.40476 * 228.26972 * 13 12 11 16 16 N 1.65603 * 107.21608 * 114.72816 * 13 12 11 17 17 C 1.46497 * 119.99941 * 65.00005 * 16 13 12 18 18 C 1.50700 * 109.47253 * 165.00139 * 17 16 13 19 19 C 1.41378 * 126.57909 * 89.99634 * 18 17 16 20 20 C 1.34520 * 106.83722 * 179.73602 * 19 18 17 21 21 O 1.34301 * 108.42417 * 0.26758 * 20 19 18 22 22 C 1.34308 * 109.47581 * 359.97438 * 21 20 19 23 23 C 1.38730 * 120.48757 * 359.49328 * 12 11 10 24 24 Cl 1.73594 * 119.89018 * 180.27433 * 23 12 11 25 25 C 1.37752 * 120.21939 * 0.25061 * 23 12 11 26 26 H 0.97006 * 120.00206 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.11546 * 0.04003 * 10 9 7 28 28 H 1.07998 * 119.86903 * 180.27087 * 11 10 9 29 29 H 0.96999 * 119.99887 * 245.00361 * 16 13 12 30 30 H 1.08997 * 109.47082 * 45.00077 * 17 16 13 31 31 H 1.09003 * 109.47399 * 285.00294 * 17 16 13 32 32 H 1.07999 * 126.58144 * 0.02562 * 19 18 17 33 33 H 1.08005 * 125.78808 * 180.23052 * 20 19 18 34 34 H 1.07994 * 125.79207 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.13213 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3765 10 6 1.8260 -3.6500 0.0822 11 6 1.1774 -4.8066 -0.2858 12 6 0.0670 -4.7516 -1.1141 13 16 -0.7495 -6.2412 -1.5821 14 8 -0.0559 -7.2993 -0.9350 15 8 -0.9281 -6.1756 -2.9902 16 7 -2.2651 -6.1995 -0.9160 17 6 -3.2287 -5.1853 -1.3510 18 6 -4.6097 -5.5738 -0.8895 19 6 -5.2186 -5.2209 0.3366 20 6 -6.4464 -5.7706 0.3343 21 8 -6.6101 -6.4388 -0.8191 22 6 -5.4982 -6.3257 -1.5639 23 6 -0.4094 -3.5320 -1.5726 24 17 -1.8053 -3.4807 -2.6032 25 6 0.2213 -2.3615 -1.2123 26 1 -0.4851 0.8401 0.0004 27 1 2.6930 -3.6960 0.7245 28 1 1.5371 -5.7611 0.0689 29 1 -2.5148 -6.8465 -0.2379 30 1 -3.2156 -5.1145 -2.4386 31 1 -2.9599 -4.2205 -0.9208 32 1 -4.7836 -4.6209 1.1221 33 1 -7.1764 -5.6889 1.1261 34 1 -5.3450 -6.7612 -2.5402 35 1 -0.1505 -1.4128 -1.5704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364766030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:17 Heat of formation + Delta-G solvation = -59.967381 kcal Electronic energy + Delta-G solvation = -24762.487715 eV Core-core repulsion = 20879.336071 eV Total energy + Delta-G solvation = -3883.151644 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.032 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46393 -39.63331 -38.27612 -37.50930 -36.81557 -36.72180 -35.82389 -33.42230 -32.08341 -31.24789 -30.53670 -27.78296 -26.89021 -23.56880 -23.08691 -22.46966 -21.57558 -20.43973 -19.60102 -18.96109 -18.63452 -17.96221 -17.33598 -17.17221 -16.74941 -16.22707 -16.09327 -15.60518 -15.39675 -15.25673 -14.97535 -14.49824 -14.21947 -14.10588 -13.91005 -13.67247 -13.24463 -13.14299 -13.08611 -12.98045 -12.92178 -12.91629 -12.65672 -12.21516 -12.03927 -11.83026 -11.65975 -11.27206 -11.17156 -10.69486 -10.39089 -9.89017 -9.50970 -9.46178 -8.93998 -6.73335 -0.37827 0.30325 0.84584 0.85517 1.17908 1.36482 1.44015 1.51103 1.58116 2.09596 2.26428 2.29344 2.46952 2.85069 3.36876 3.59745 3.79380 3.95480 4.14052 4.21980 4.42335 4.62799 4.66473 4.76065 4.81741 4.90115 4.93861 5.05903 5.12927 5.23373 5.28191 5.39325 5.52958 5.53430 5.79265 5.99671 6.13588 6.17904 6.30560 6.57075 6.62897 7.99771 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.003961 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.865042 B = 7066.595343 C = 8206.522109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.448 4.448 8 H 0.101 0.899 9 C 0.115 3.885 10 C -0.250 4.250 11 C 0.005 3.995 12 C -0.806 4.806 13 S 2.723 3.277 14 O -0.998 6.998 15 O -0.987 6.987 16 N -1.104 6.104 17 C 0.184 3.816 18 C -0.210 4.210 19 C -0.222 4.222 20 C -0.034 4.034 21 O -0.182 6.182 22 C -0.022 4.022 23 C 0.063 3.937 24 Cl -0.078 7.078 25 C -0.191 4.191 26 H 0.302 0.698 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.423 0.577 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.240 0.760 34 H 0.225 0.775 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 -3.670 1.319 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.474 4.474 8 H 0.119 0.881 9 C 0.110 3.890 10 C -0.271 4.271 11 C -0.015 4.015 12 C -0.899 4.899 13 S 2.816 3.184 14 O -0.989 6.989 15 O -0.977 6.977 16 N -0.865 5.865 17 C 0.058 3.942 18 C -0.213 4.213 19 C -0.242 4.242 20 C -0.101 4.101 21 O -0.077 6.077 22 C -0.091 4.091 23 C 0.035 3.965 24 Cl -0.049 7.049 25 C -0.211 4.211 26 H 0.114 0.886 27 H 0.140 0.860 28 H 0.153 0.847 29 H 0.259 0.741 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.256 0.744 34 H 0.241 0.759 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.823 -4.219 0.496 10.702 hybrid contribution 0.437 1.343 0.691 1.572 sum -9.386 -2.876 1.187 9.889 Atomic orbital electron populations 1.69812 1.09383 1.32382 1.29208 1.27038 0.95588 1.05270 0.90681 0.85078 0.78842 0.74440 0.80596 1.18191 1.18821 1.17633 1.20302 0.99223 0.91664 1.36209 0.88104 1.18072 0.90057 0.93676 0.87156 1.21345 1.05276 0.92346 1.08092 1.20466 0.91277 0.98609 0.91159 1.29503 1.18063 1.15559 1.26761 1.00454 0.72082 0.72752 0.73075 1.93458 1.73337 1.54858 1.77209 1.93507 1.85867 1.87490 1.30819 1.55351 1.29227 1.44070 1.57817 1.20300 0.84126 0.90483 0.99254 1.20598 0.97566 1.05540 0.97643 1.22000 0.96440 1.06472 0.99257 1.24680 0.99255 0.97125 0.89002 1.84097 1.37604 1.59158 1.26886 1.24388 0.84206 1.01758 0.98728 1.20227 0.88893 0.94474 0.92898 1.98307 1.40178 1.98476 1.67951 1.21278 1.00591 0.95916 1.03354 0.88639 0.86012 0.84694 0.74126 0.89891 0.91023 0.83067 0.74423 0.75854 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.77 10.95 21.83 0.24 -35.53 16 2 C 0.04 1.53 5.14 85.26 0.44 1.97 16 3 Si 0.99 32.44 29.60 68.60 2.03 34.47 16 4 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 5 H -0.26 -8.19 7.11 99.48 0.71 -7.49 16 6 H -0.25 -7.93 7.11 99.48 0.71 -7.22 16 7 C -0.45 -21.01 9.05 23.46 0.21 -20.80 16 8 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 9 C 0.11 5.65 5.57 -21.29 -0.12 5.53 16 10 C -0.25 -11.43 9.79 22.73 0.22 -11.21 16 11 C 0.00 0.21 9.52 22.22 0.21 0.42 16 12 C -0.81 -35.37 5.91 22.48 0.13 -35.23 16 13 S 2.72 104.98 5.44 -56.49 -0.31 104.67 16 14 O -1.00 -40.98 16.94 -128.00 -2.17 -43.15 16 15 O -0.99 -41.62 15.95 -128.00 -2.04 -43.66 16 16 N -1.10 -34.60 5.99 -190.79 -1.14 -35.75 16 17 C 0.18 5.65 4.61 85.63 0.39 6.04 16 18 C -0.21 -5.45 5.56 -19.94 -0.11 -5.56 16 19 C -0.22 -5.14 10.87 22.19 0.24 -4.90 16 20 C -0.03 -0.62 12.09 66.97 0.81 0.19 16 21 O -0.18 -3.81 10.65 -2.51 -0.03 -3.84 16 22 C -0.02 -0.48 12.01 66.97 0.80 0.33 16 23 C 0.06 2.89 6.08 22.27 0.14 3.02 16 24 Cl -0.08 -3.08 20.52 -2.72 -0.06 -3.13 16 25 C -0.19 -9.40 8.47 22.75 0.19 -9.20 16 26 H 0.30 12.24 8.30 -92.70 -0.77 11.47 16 27 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 28 H 0.14 5.30 7.31 -2.91 -0.02 5.28 16 29 H 0.42 11.29 8.64 -96.75 -0.84 10.46 16 30 H 0.08 2.61 5.86 -2.39 -0.01 2.59 16 31 H 0.07 2.42 6.14 -2.39 -0.01 2.41 16 32 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.24 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.23 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.12 6.20 6.16 -2.91 -0.02 6.18 16 Total: -1.00 -61.27 324.58 0.42 -60.85 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.33 Total: 34.46 kcal Atomic # 6 Polarization: -72.96 SS G_CDS: 3.57 Total: -69.40 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -0.90 Total: -71.28 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: -4.24 Total: -90.65 kcal Atomic # 14 Polarization: 32.44 SS G_CDS: 2.03 Total: 34.47 kcal Atomic # 16 Polarization: 104.98 SS G_CDS: -0.31 Total: 104.67 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.06 Total: -3.13 kcal Total: -61.27 0.42 -60.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364766030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.881 kcal (2) G-P(sol) polarization free energy of solvation -61.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds