Wall clock time and date at job start Sat Apr 11 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35948 * 116.99834 * 2 1 4 4 N 1.30341 * 121.63982 * 1.75148 * 3 2 1 5 5 S 1.69585 * 107.17454 * 180.02562 * 4 3 2 6 6 C 1.72027 * 95.78105 * 0.02562 * 5 4 3 7 7 C 1.35060 * 105.60085 * 359.97438 * 6 5 4 8 8 S 1.76203 * 122.64013 * 179.73105 * 7 6 5 9 9 O 1.42104 * 106.40234 * 232.14409 * 8 7 6 10 10 O 1.42097 * 106.40069 * 5.06330 * 8 7 6 11 11 N 1.65597 * 107.21428 * 118.60302 * 8 7 6 12 12 C 1.38817 * 120.00144 * 297.67578 * 11 8 7 13 13 C 1.39801 * 119.58274 * 175.35060 * 12 11 8 14 14 C 1.38593 * 119.48829 * 179.78863 * 13 12 11 15 15 C 1.38396 * 118.68307 * 0.47953 * 14 13 12 16 16 C 1.40553 * 119.14308 * 359.74205 * 15 14 13 17 17 C 1.41323 * 119.77974 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99928 * 332.32290 * 17 16 15 19 19 C 1.40024 * 119.99874 * 152.31457 * 17 16 15 20 20 N 1.30743 * 120.00192 * 353.80608 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 173.80395 * 19 17 16 22 22 H 1.48502 * 109.47273 * 59.99766 * 21 19 17 23 23 H 1.48490 * 109.47497 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46819 * 300.00356 * 21 19 17 25 25 N 1.31948 * 119.58715 * 355.61876 * 12 11 8 26 26 H 1.09003 * 109.47008 * 180.95812 * 1 2 3 27 27 H 1.09002 * 109.46930 * 300.95195 * 1 2 3 28 28 H 1.09001 * 109.47603 * 60.95579 * 1 2 3 29 29 H 1.07996 * 127.20391 * 180.02562 * 6 5 4 30 30 H 0.97000 * 119.99527 * 117.68023 * 11 8 7 31 31 H 1.07999 * 120.25238 * 359.97438 * 13 12 11 32 32 H 1.08000 * 120.65914 * 180.21940 * 14 13 12 33 33 H 1.07996 * 120.42624 * 179.77122 * 15 14 13 34 34 H 0.96997 * 120.00637 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3683 2.3241 0.0339 5 16 2.4910 3.5950 0.0202 6 6 3.8876 2.5919 -0.0328 7 6 3.4238 1.3235 -0.0369 8 16 4.4901 -0.0781 -0.0930 9 8 4.0324 -0.8878 -1.1674 10 8 5.8169 0.4235 -0.0083 11 7 4.2297 -0.9478 1.2919 12 6 4.4996 -0.3797 2.5294 13 6 4.1855 -1.0840 3.6955 14 6 4.4599 -0.5168 4.9299 15 6 5.0316 0.7430 4.9698 16 6 5.3197 1.4024 3.7624 17 6 5.9040 2.6889 3.7874 18 1 5.7320 3.3439 4.6288 19 6 6.7060 3.1145 2.7214 20 7 7.0138 2.2815 1.7618 21 14 7.3361 4.8722 2.6703 22 1 8.1678 5.1351 3.8722 23 1 8.1559 5.0688 1.4479 24 1 6.1850 5.8102 2.6500 25 7 5.0446 0.8204 2.5904 26 1 -0.3633 -1.0276 0.0172 27 1 -0.3633 0.5286 0.8813 28 1 -0.3634 0.4989 -0.8984 29 1 4.9194 2.9099 -0.0568 30 1 3.8885 -1.8543 1.2384 31 1 3.7352 -2.0637 3.6347 32 1 4.2283 -1.0456 5.8427 33 1 5.2538 1.2130 5.9163 34 1 7.5697 2.5761 1.0236 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364981442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:21 Heat of formation + Delta-G solvation = -20.201971 kcal Electronic energy + Delta-G solvation = -26217.139635 eV Core-core repulsion = 22370.048807 eV Total energy + Delta-G solvation = -3847.090829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.034 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99157 -38.56286 -36.64773 -36.33519 -35.09029 -34.67531 -33.17367 -31.16469 -30.60412 -28.87643 -27.93076 -25.58988 -24.19511 -21.90825 -21.51268 -20.92969 -19.14139 -18.33106 -17.94712 -17.58474 -16.61983 -16.19365 -16.02589 -15.56418 -14.99544 -14.89427 -14.66349 -14.20968 -13.99605 -13.47976 -13.38262 -13.08367 -12.88996 -12.25527 -12.12978 -11.62736 -11.50079 -11.40577 -11.33373 -11.16203 -11.15230 -11.09220 -11.05650 -10.88130 -10.71772 -10.32059 -10.14852 -10.06594 -9.75363 -9.21292 -8.37351 -8.27216 -7.82189 -7.20981 -6.52338 -4.53709 0.70423 0.97987 1.62689 1.89102 2.31389 2.69691 2.88411 3.06990 3.09020 3.12908 3.20734 3.51884 3.94082 4.29879 4.66940 4.76056 5.16102 5.25435 5.33764 5.50015 5.53897 5.65336 5.71214 5.74814 6.03530 6.21611 6.37492 6.66464 6.69273 6.96142 7.05963 7.20321 7.44803 7.51950 7.62494 7.98933 8.20150 8.64747 8.84072 9.79603 10.32654 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.006751 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.121086 B = 4146.342113 C = 5041.299419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.293 6.293 3 C 0.377 3.623 4 N -0.544 5.544 5 S 0.313 5.687 6 C -0.026 4.026 7 C -0.737 4.737 8 S 2.716 3.284 9 O -0.973 6.973 10 O -0.890 6.890 11 N -1.028 6.028 12 C 0.387 3.613 13 C -0.328 4.328 14 C -0.036 4.036 15 C -0.289 4.289 16 C 0.307 3.693 17 C -0.445 4.445 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.703 5.703 21 Si 0.888 3.112 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.264 1.264 25 N -0.525 5.525 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.208 0.792 30 H 0.422 0.578 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 -0.243 -3.870 8.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.199 6.199 3 C 0.163 3.837 4 N -0.384 5.384 5 S 0.461 5.539 6 C -0.175 4.175 7 C -0.838 4.838 8 S 2.799 3.201 9 O -0.963 6.963 10 O -0.879 6.879 11 N -0.777 5.777 12 C 0.149 3.851 13 C -0.356 4.356 14 C -0.061 4.061 15 C -0.312 4.312 16 C 0.181 3.819 17 C -0.477 4.477 18 H 0.103 0.897 19 C -0.153 4.153 20 N -0.324 5.324 21 Si 0.712 3.288 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.189 1.189 25 N -0.246 5.246 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.225 0.775 30 H 0.256 0.744 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.759 1.503 -5.503 9.630 hybrid contribution 0.232 -1.133 1.166 1.642 sum -7.527 0.370 -4.337 8.695 Atomic orbital electron populations 1.22983 0.76477 1.03671 1.02501 1.86277 1.23326 1.22431 1.87830 1.19276 0.88001 0.85350 0.91123 1.76378 1.26209 1.01004 1.34827 1.83727 0.90518 1.13500 1.66193 1.26582 1.07222 0.95112 0.88631 1.29991 1.06143 1.19698 1.27966 1.01737 0.73984 0.72535 0.71826 1.93562 1.83337 1.67859 1.51520 1.93735 1.30516 1.79133 1.84511 1.53110 1.78481 1.26141 1.19989 1.17995 0.92185 0.91770 0.83132 1.20640 1.20044 1.02826 0.92041 1.20715 0.95004 0.94719 0.95645 1.21755 1.13651 0.97115 0.98707 1.18005 0.87239 0.91913 0.84714 1.19354 1.25442 0.98625 1.04260 0.89742 1.25974 0.96048 0.98318 0.94935 1.69939 1.22227 1.34338 1.05859 0.86693 0.79752 0.83467 0.78867 1.18957 1.20086 1.18885 1.67778 1.18587 1.08133 1.30090 0.87883 0.91985 0.92164 0.77503 0.74380 0.88372 0.88177 0.87913 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.48 101.05 1.06 1.54 16 2 O -0.29 -4.99 9.98 -19.58 -0.20 -5.19 16 3 C 0.38 6.99 7.40 -18.17 -0.13 6.85 16 4 N -0.54 -9.57 11.12 28.92 0.32 -9.25 16 5 S 0.31 4.95 23.71 -107.50 -2.55 2.40 16 6 C -0.03 -0.48 10.82 29.60 0.32 -0.16 16 7 C -0.74 -14.26 5.37 -40.70 -0.22 -14.48 16 8 S 2.72 54.89 5.10 -107.50 -0.55 54.35 16 9 O -0.97 -20.13 17.83 -57.38 -1.02 -21.15 16 10 O -0.89 -20.26 15.25 -57.17 -0.87 -21.13 16 11 N -1.03 -19.98 5.84 31.15 0.18 -19.80 16 12 C 0.39 8.70 7.31 -155.33 -1.14 7.56 16 13 C -0.33 -6.89 9.95 -38.87 -0.39 -7.28 16 14 C -0.04 -0.76 10.15 -39.39 -0.40 -1.16 16 15 C -0.29 -6.66 9.83 -38.65 -0.38 -7.04 16 16 C 0.31 7.75 6.31 -85.00 -0.54 7.21 16 17 C -0.45 -10.96 9.11 -37.74 -0.34 -11.31 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.73 5.43 -17.35 -0.09 1.64 16 20 N -0.70 -17.25 10.86 55.55 0.60 -16.64 16 21 Si 0.89 17.27 29.56 -169.99 -5.03 12.24 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 N -0.53 -12.94 6.50 -10.33 -0.07 -13.01 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.21 3.68 7.94 -52.49 -0.42 3.26 16 30 H 0.42 6.74 8.82 -34.46 -0.30 6.43 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -30.78 330.70 -9.24 -40.02 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -2.80 Total: 8.79 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.25 Total: -16.61 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 1.04 Total: -58.71 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -2.09 Total: -47.47 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 59.85 SS G_CDS: -3.10 Total: 56.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.78 -9.24 -40.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364981442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.820 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds