Wall clock time and date at job start Sat Apr 11 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99681 * 3 2 1 5 5 H 1.48498 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47160 * 119.99608 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 C 1.52997 * 109.47112 * 269.35041 * 13 12 11 15 15 O 1.42891 * 109.47173 * 65.00026 * 14 13 12 16 16 C 1.35920 * 117.00325 * 179.97438 * 15 14 13 17 17 C 1.38720 * 120.05487 * 0.02562 * 16 15 14 18 18 C 1.38145 * 119.95330 * 179.97438 * 17 16 15 19 19 C 1.38280 * 120.07506 * 0.02562 * 18 17 16 20 20 C 1.38247 * 120.11560 * 359.97438 * 19 18 17 21 21 C 1.38247 * 120.04185 * 359.70510 * 20 19 18 22 22 Br 1.89102 * 120.03140 * 180.27243 * 21 20 19 23 23 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 24 24 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 26 26 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 27 27 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 28 28 H 1.08991 * 109.47431 * 29.35308 * 13 12 11 29 29 H 1.09001 * 109.46798 * 149.35006 * 13 12 11 30 30 H 1.09000 * 109.47131 * 185.00277 * 14 13 12 31 31 H 1.09003 * 109.46920 * 305.00338 * 14 13 12 32 32 H 1.08001 * 120.02544 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.96331 * 179.97438 * 18 17 16 34 34 H 1.07995 * 119.94367 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.98251 * 179.97438 * 20 19 18 36 36 H 1.08997 * 113.75944 * 270.36826 * 23 12 11 37 37 H 1.09001 * 113.85960 * 139.01471 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 6 0.8543 -5.7312 -2.9675 15 8 -0.0537 -4.8113 -3.5767 16 6 -1.0299 -5.3370 -4.3630 17 6 -1.1123 -6.7099 -4.5438 18 6 -2.1056 -7.2420 -5.3429 19 6 -3.0173 -6.4076 -5.9631 20 6 -2.9380 -5.0390 -5.7849 21 6 -1.9500 -4.5018 -4.9809 22 35 -1.8464 -2.6302 -4.7313 23 6 2.1608 -3.7400 -0.0455 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3474 -1.7966 1.0268 26 1 -0.3215 -2.8278 -1.5256 27 1 1.3291 -2.4995 -2.2139 28 1 2.3658 -4.2119 -2.7492 29 1 2.6193 -5.6522 -1.7348 30 1 1.3737 -6.2957 -3.7418 31 1 0.3007 -6.4177 -2.3268 32 1 -0.4003 -7.3624 -4.0601 33 1 -2.1696 -8.3109 -5.4841 34 1 -3.7927 -6.8259 -6.5877 35 1 -3.6510 -4.3893 -6.2707 36 1 3.1443 -3.5477 -0.4741 37 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365296602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:26 Heat of formation + Delta-G solvation = -17.211696 kcal Electronic energy + Delta-G solvation = -21728.478922 eV Core-core repulsion = 18325.833842 eV Total energy + Delta-G solvation = -3402.645081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17542 -38.86934 -37.36794 -34.28743 -32.35738 -32.01517 -31.00757 -29.95114 -28.73888 -26.73812 -24.96229 -24.44991 -22.56771 -22.23009 -20.71054 -18.55478 -18.30808 -17.16457 -16.09043 -15.96951 -15.87732 -15.07886 -14.72011 -14.62098 -14.10444 -13.92786 -13.66355 -13.42258 -13.08425 -12.75190 -12.11957 -11.93313 -11.88389 -11.60068 -11.35087 -11.13886 -11.01437 -10.84095 -10.71572 -10.58494 -10.46203 -10.24898 -9.95210 -9.87336 -9.21742 -8.90177 -8.57332 -8.17459 -8.14694 -7.73094 -6.18759 -4.28521 1.02542 1.28867 1.87894 3.24617 3.25072 3.30070 3.32213 3.54687 4.30514 4.64627 4.70544 4.73959 4.99422 5.04120 5.11887 5.21940 5.31733 5.40407 5.43600 5.61470 5.74629 5.93889 6.02131 6.05492 6.10737 6.19202 6.28817 6.41712 6.54324 6.58828 6.74873 7.22982 7.26456 7.41086 7.45813 7.82788 8.02441 8.08591 8.72041 9.40883 9.69502 10.86948 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.004312 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.204237 B = 6492.522380 C = 7816.491342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.241 3.759 10 O -0.573 6.573 11 C 0.008 3.992 12 N -0.479 5.479 13 C 0.018 3.982 14 C 0.069 3.931 15 O -0.284 6.284 16 C 0.168 3.832 17 C -0.209 4.209 18 C -0.067 4.067 19 C -0.164 4.164 20 C -0.055 4.055 21 C -0.132 4.132 22 Br -0.026 7.026 23 C 0.007 3.993 24 H 0.270 0.730 25 H 0.388 0.612 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.063 0.937 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -11.888 -13.261 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.199 3.801 10 O -0.384 6.384 11 C -0.121 4.121 12 N -0.202 5.202 13 C -0.111 4.111 14 C -0.006 4.006 15 O -0.196 6.196 16 C 0.118 3.882 17 C -0.229 4.229 18 C -0.086 4.086 19 C -0.183 4.183 20 C -0.075 4.075 21 C -0.212 4.212 22 Br 0.059 6.941 23 C -0.122 4.122 24 H 0.080 0.920 25 H 0.242 0.758 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.545 -11.907 -12.767 18.040 hybrid contribution 0.864 1.209 -0.670 1.630 sum -3.681 -10.699 -13.437 17.566 Atomic orbital electron populations 1.69428 1.06003 1.27741 1.50255 1.25025 0.94938 0.99434 0.93510 0.86536 0.79626 0.82402 0.78759 1.20122 1.21041 1.20008 1.21597 0.93530 0.90836 1.51830 0.91899 1.19796 0.85397 0.90579 0.84299 1.86027 1.47042 1.49555 1.55754 1.24663 1.01077 0.85844 1.00520 1.68622 1.25062 1.17923 1.08636 1.22684 0.94707 0.99331 0.94403 1.22950 0.90583 0.92092 0.94985 1.86343 1.38777 1.35727 1.58713 1.18746 0.88452 0.91244 0.89721 1.21272 1.03105 0.93348 1.05161 1.21030 0.93250 0.99900 0.94412 1.20993 1.01158 0.92841 1.03294 1.20973 0.95584 0.95621 0.95311 1.21221 1.01150 0.92002 1.06861 1.96824 1.98438 1.02147 1.96691 1.24121 0.94865 0.96986 0.96217 0.91963 0.75846 0.90711 0.92357 0.93122 0.89795 0.92386 0.91243 0.84802 0.85487 0.85379 0.84720 0.91864 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 11.20 55.43 0.62 -23.91 16 2 C 0.07 1.97 5.40 -17.82 -0.10 1.87 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.66 8.61 -34.44 -0.30 -14.96 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 6.21 1.40 -90.84 -0.13 6.08 16 10 O -0.57 -15.83 13.48 -35.23 -0.48 -16.30 16 11 C 0.01 0.19 6.55 -2.57 -0.02 0.17 16 12 N -0.48 -10.01 6.15 -237.94 -1.46 -11.47 16 13 C 0.02 0.29 5.29 -3.83 -0.02 0.27 16 14 C 0.07 0.99 5.08 37.16 0.19 1.18 16 15 O -0.28 -4.80 8.61 -19.49 -0.17 -4.97 16 16 C 0.17 2.52 6.68 -39.20 -0.26 2.26 16 17 C -0.21 -2.52 9.04 -39.44 -0.36 -2.87 16 18 C -0.07 -0.68 10.04 -39.60 -0.40 -1.07 16 19 C -0.16 -1.63 10.04 -39.56 -0.40 -2.03 16 20 C -0.05 -0.65 9.78 -39.57 -0.39 -1.04 16 21 C -0.13 -1.95 6.24 -39.38 -0.25 -2.20 16 22 Br -0.03 -0.43 33.16 -68.01 -2.26 -2.69 16 23 C 0.01 0.15 7.34 -2.76 -0.02 0.13 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.39 10.91 6.60 45.56 0.30 11.21 16 26 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 27 H 0.06 1.42 7.43 -51.93 -0.39 1.03 16 28 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 29 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 30 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 31 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 32 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.06 1.29 7.87 -51.93 -0.41 0.88 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -29.68 330.52 -10.30 -39.98 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.08 Total: 10.80 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.43 Total: -12.21 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.84 Total: -35.38 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.64 Total: -21.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.26 Total: -2.69 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -10.30 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365296602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.770 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds