Wall clock time and date at job start Sat Apr 11 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48497 * 109.47297 * 270.00063 * 3 2 1 5 5 H 1.48502 * 109.46866 * 29.99988 * 3 2 1 6 6 H 1.48493 * 109.46913 * 149.99874 * 3 2 1 7 7 C 1.39935 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00361 * 197.86739 * 7 2 1 9 9 C 1.41404 * 120.00143 * 17.86975 * 7 2 1 10 10 C 1.40749 * 120.23341 * 24.40249 * 9 7 2 11 11 C 1.37600 * 119.76980 * 179.97438 * 10 9 7 12 12 C 1.38636 * 120.26210 * 0.26056 * 11 10 9 13 13 S 1.76201 * 119.75688 * 179.74488 * 12 11 10 14 14 O 1.42104 * 106.40092 * 228.53705 * 13 12 11 15 15 O 1.42099 * 106.40329 * 1.45619 * 13 12 11 16 16 N 1.65604 * 107.22040 * 114.99760 * 13 12 11 17 17 C 1.46500 * 119.99568 * 64.99646 * 16 13 12 18 18 C 1.50707 * 109.46526 * 165.00209 * 17 16 13 19 19 N 1.30500 * 125.64779 * 275.02525 * 18 17 16 20 20 C 1.34130 * 109.25570 * 180.02562 * 19 18 17 21 21 C 1.34670 * 108.01996 * 0.02562 * 20 19 18 22 22 N 1.35036 * 125.65161 * 94.72044 * 18 17 16 23 23 H 0.97002 * 126.39569 * 0.02562 * 22 18 17 24 24 C 1.38733 * 120.48704 * 359.48260 * 12 11 10 25 25 Cl 1.73597 * 119.89036 * 180.23905 * 24 12 11 26 26 C 1.37761 * 120.22181 * 0.51375 * 24 12 11 27 27 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.11458 * 359.96585 * 10 9 7 29 29 H 1.07998 * 119.86801 * 179.97438 * 11 10 9 30 30 H 0.96994 * 119.99817 * 245.00054 * 16 13 12 31 31 H 1.08993 * 109.47443 * 284.99938 * 17 16 13 32 32 H 1.09001 * 109.47043 * 45.00742 * 17 16 13 33 33 H 1.07998 * 125.99065 * 180.02562 * 20 19 18 34 34 H 1.07999 * 126.59273 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.13267 * 179.76676 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 0.2211 -2.3624 -1.2111 11 6 -0.4094 -3.5314 -1.5707 12 6 0.0621 -4.7503 -1.1082 13 16 -0.7595 -6.2386 -1.5716 14 8 -0.9561 -6.9779 -0.3741 15 8 -1.8232 -5.8581 -2.4335 16 7 0.2991 -7.1161 -2.4944 17 6 1.5343 -7.6332 -1.9001 18 6 2.1280 -8.6802 -2.8071 19 7 1.8037 -9.9441 -2.8241 20 6 2.5338 -10.5756 -3.7555 21 6 3.3415 -9.6686 -4.3372 22 7 3.0795 -8.4647 -3.7407 23 1 3.5014 -7.6161 -3.9474 24 6 1.1792 -4.8073 -0.2875 25 17 1.7599 -6.3425 0.2777 26 6 1.8259 -3.6494 0.0849 27 1 -0.4850 0.8400 0.0004 28 1 -0.1508 -1.4138 -1.5693 29 1 -1.2777 -3.4989 -2.2121 30 1 0.1014 -7.2876 -3.4284 31 1 2.2456 -6.8173 -1.7727 32 1 1.3124 -8.0769 -0.9295 33 1 2.4828 -11.6271 -3.9965 34 1 4.0551 -9.8543 -5.1264 35 1 2.6932 -3.6952 0.7269 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413312302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:29 Heat of formation + Delta-G solvation = 3.540989 kcal Electronic energy + Delta-G solvation = -24649.228067 eV Core-core repulsion = 20801.123104 eV Total energy + Delta-G solvation = -3848.104963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10707 -37.99241 -36.68377 -36.00515 -35.17223 -35.04390 -34.13847 -32.56354 -30.54390 -29.83589 -29.44562 -26.12717 -25.77575 -21.80049 -21.68783 -21.54687 -20.77949 -19.07014 -18.33497 -17.94083 -17.32090 -16.51252 -16.03887 -15.65067 -14.94398 -14.71092 -14.61453 -14.53327 -14.00071 -13.71283 -13.52424 -13.40542 -13.17951 -12.87008 -12.51915 -12.23039 -11.71911 -11.59708 -11.51645 -11.38018 -11.33778 -11.17724 -10.70954 -10.60208 -10.27685 -10.13660 -10.11242 -10.03716 -9.75058 -9.62371 -9.16191 -8.57903 -8.23179 -7.80001 -7.33717 -5.02623 1.07844 1.92571 1.96553 2.51417 2.68622 2.77270 2.81549 2.83392 3.00644 3.02610 3.52722 3.72460 4.04575 4.26401 4.45882 4.87231 5.07432 5.12688 5.17818 5.29198 5.53698 5.71010 5.85203 5.95338 6.02050 6.42325 6.45906 6.58566 6.62282 6.65706 6.89170 7.02969 7.20133 7.22083 7.33033 7.48935 7.66093 8.00678 8.06760 8.25692 8.33912 9.57311 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.003447 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.248719 B = 8121.761456 C = 8732.442670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.422 4.422 8 H 0.092 0.908 9 C 0.141 3.859 10 C -0.181 4.181 11 C -0.006 4.006 12 C -0.789 4.789 13 S 2.699 3.301 14 O -0.963 6.963 15 O -0.979 6.979 16 N -1.118 6.118 17 C 0.201 3.799 18 C 0.201 3.799 19 N -0.475 5.475 20 C -0.031 4.031 21 C -0.055 4.055 22 N -0.560 5.560 23 H 0.422 0.578 24 C 0.082 3.918 25 Cl -0.098 7.098 26 C -0.220 4.220 27 H 0.293 0.707 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.413 0.587 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 -6.964 -7.038 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.154 4.154 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.449 4.449 8 H 0.110 0.890 9 C 0.137 3.863 10 C -0.201 4.201 11 C -0.027 4.027 12 C -0.884 4.884 13 S 2.795 3.205 14 O -0.953 6.953 15 O -0.970 6.970 16 N -0.875 5.875 17 C 0.073 3.927 18 C -0.065 4.065 19 N -0.195 5.195 20 C -0.180 4.180 21 C -0.190 4.190 22 N -0.164 5.164 23 H 0.260 0.740 24 C 0.054 3.946 25 Cl -0.069 7.069 26 C -0.241 4.241 27 H 0.105 0.895 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.246 0.754 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.187 0.813 34 H 0.194 0.806 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.750 -7.608 -6.024 11.280 hybrid contribution 1.770 1.739 -1.006 2.677 sum 7.520 -5.869 -7.030 11.850 Atomic orbital electron populations 1.69801 1.08007 1.30936 1.28924 1.26193 0.94969 1.02404 0.91827 0.86056 0.80491 0.79067 0.79919 1.18642 1.19661 1.18028 1.19992 0.98628 0.90904 1.35357 0.88974 1.17729 0.90318 0.91395 0.86872 1.21426 0.99627 0.97225 1.01804 1.20280 0.96495 0.90777 0.95102 1.29109 1.17032 1.17281 1.24985 1.01259 0.72565 0.73614 0.73093 1.93555 1.84324 1.71255 1.46168 1.93498 1.52076 1.84020 1.67403 1.55725 1.35904 1.71006 1.24882 1.20529 0.85962 0.92231 0.93930 1.23498 0.93516 0.94199 0.95241 1.70309 1.24969 1.03497 1.20715 1.22421 0.97758 1.00182 0.97640 1.22798 1.06511 0.85404 1.04262 1.43365 1.32397 1.10981 1.29625 0.74033 1.20062 0.94212 0.84877 0.95438 1.98324 1.88783 1.30684 1.89151 1.20953 1.04637 0.90877 1.07651 0.89513 0.85420 0.86446 0.75431 0.89226 0.86994 0.81273 0.80573 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.86 10.95 55.55 0.61 -16.25 16 2 C 0.07 1.49 5.14 -17.35 -0.09 1.40 16 3 Si 0.92 15.74 29.60 -169.99 -5.03 10.71 16 4 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 5 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 6 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 7 C -0.42 -9.51 9.05 -37.74 -0.34 -9.85 16 8 H 0.09 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.14 3.29 5.57 -106.83 -0.60 2.70 16 10 C -0.18 -4.20 8.70 -38.87 -0.34 -4.53 16 11 C -0.01 -0.13 9.52 -39.67 -0.38 -0.51 16 12 C -0.79 -16.67 5.91 -39.25 -0.23 -16.90 16 13 S 2.70 52.40 5.44 -107.50 -0.58 51.82 16 14 O -0.96 -20.92 15.96 -57.17 -0.91 -21.83 16 15 O -0.98 -20.70 16.94 -57.17 -0.97 -21.67 16 16 N -1.12 -17.41 5.99 -11.65 -0.07 -17.48 16 17 C 0.20 2.98 4.71 -5.19 -0.02 2.96 16 18 C 0.20 2.75 7.55 -155.42 -1.17 1.58 16 19 N -0.47 -7.19 11.25 -10.81 -0.12 -7.31 16 20 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 21 C -0.05 -0.51 12.04 -16.56 -0.20 -0.71 16 22 N -0.56 -5.72 6.15 -10.23 -0.06 -5.78 16 23 H 0.42 3.12 8.96 -40.82 -0.37 2.76 16 24 C 0.08 1.71 6.08 -39.57 -0.24 1.47 16 25 Cl -0.10 -1.76 20.49 -51.86 -1.06 -2.82 16 26 C -0.22 -4.80 9.57 -38.84 -0.37 -5.17 16 27 H 0.29 5.85 8.30 -40.82 -0.34 5.51 16 28 H 0.13 2.99 6.15 -52.49 -0.32 2.66 16 29 H 0.12 2.42 7.31 -52.49 -0.38 2.04 16 30 H 0.41 5.60 8.64 -34.47 -0.30 5.31 16 31 H 0.09 1.23 6.11 -51.93 -0.32 0.92 16 32 H 0.11 1.83 5.86 -51.93 -0.30 1.53 16 33 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -30.00 323.22 -10.34 -40.33 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -2.81 Total: 13.56 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -4.19 Total: -28.15 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.35 Total: -46.82 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.88 Total: -43.50 kcal Atomic # 14 Polarization: 15.74 SS G_CDS: -5.03 Total: 10.71 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.58 Total: 51.82 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.06 Total: -2.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.00 -10.34 -40.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413312302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.875 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds