Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42100 * 110.54169 * 2 1 4 4 O 1.42105 * 110.54176 * 223.25504 * 2 1 3 5 5 C 1.76198 * 104.45299 * 111.62733 * 2 1 3 6 6 C 1.33814 * 124.51844 * 89.99555 * 5 2 1 7 7 C 1.37477 * 115.09925 * 179.97438 * 6 5 2 8 8 C 1.36659 * 113.29610 * 0.02562 * 7 6 5 9 9 C 1.46568 * 125.46036 * 180.02562 * 8 7 6 10 10 O 1.21724 * 120.00180 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99700 * 180.02562 * 9 8 7 12 12 C 1.40540 * 119.99882 * 180.02562 * 11 9 8 13 13 C 1.40665 * 126.08241 * 0.02562 * 12 11 9 14 14 N 1.30904 * 108.39147 * 179.97438 * 13 12 11 15 15 N 1.40078 * 108.40781 * 0.02562 * 14 13 12 16 16 C 1.37314 * 126.06970 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00123 * 180.02562 * 16 15 14 18 18 C 1.38992 * 119.99909 * 0.02562 * 16 15 14 19 19 N 1.31296 * 119.99760 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47054 * 59.99784 * 20 18 16 22 22 H 1.48500 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47250 * 300.00105 * 20 18 16 24 24 C 1.35690 * 126.08863 * 179.97438 * 12 11 9 25 25 S 1.70616 * 124.52309 * 270.27594 * 5 2 1 26 26 H 1.08992 * 109.47212 * 308.37002 * 1 2 3 27 27 H 1.08999 * 109.47217 * 68.37611 * 1 2 3 28 28 H 1.09002 * 109.47148 * 188.36894 * 1 2 3 29 29 H 1.07998 * 122.45029 * 359.97438 * 6 5 2 30 30 H 1.07997 * 123.35556 * 180.02562 * 7 6 5 31 31 H 0.96997 * 120.00338 * 359.97438 * 11 9 8 32 32 H 1.08005 * 125.80678 * 359.71000 * 13 12 11 33 33 H 0.97006 * 119.99927 * 180.02562 * 19 18 16 34 34 H 1.08005 * 126.24092 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 6 2.2538 -0.6289 1.5861 6 6 2.4429 -1.9244 1.8624 7 6 2.7820 -2.1993 3.1660 8 6 2.8638 -1.0830 3.9500 9 6 3.2050 -1.0681 5.3753 10 8 3.4435 -2.1115 5.9550 11 7 3.2536 0.1009 6.0444 12 6 3.5813 0.1153 7.4110 13 6 3.8806 -1.0080 8.2030 14 7 4.1348 -0.5992 9.4203 15 7 4.0078 0.7954 9.4541 16 6 4.1947 1.5978 10.5526 17 1 4.0702 2.6672 10.4677 18 6 4.5441 1.0337 11.7740 19 7 4.6949 -0.2665 11.8773 20 14 4.7976 2.1251 13.2685 21 1 3.5429 2.8640 13.5604 22 1 5.1620 1.2860 14.4382 23 1 5.8899 3.0933 12.9949 24 6 3.6662 1.2152 8.2011 25 16 2.4885 0.3321 2.9762 26 1 -0.3633 0.6379 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1496 29 1 2.3370 -2.6976 1.1158 30 1 2.9654 -3.1979 3.5339 31 1 3.0631 0.9324 5.5826 32 1 3.8939 -2.0338 7.8653 33 1 4.9384 -0.6602 12.7298 34 1 3.4941 2.2364 7.8944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433623477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = 23.339045 kcal Electronic energy + Delta-G solvation = -23398.028915 eV Core-core repulsion = 19552.826166 eV Total energy + Delta-G solvation = -3845.202749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.034 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12135 -39.00043 -37.75944 -37.34232 -36.34968 -34.41313 -33.29791 -30.78184 -30.25067 -29.88154 -27.93963 -25.75956 -24.67365 -22.01887 -20.98492 -20.60341 -19.60358 -19.10001 -18.63742 -17.55692 -16.66037 -16.58658 -16.32213 -15.79004 -15.52752 -15.21468 -14.96206 -14.52452 -14.05955 -13.81488 -13.70261 -13.51484 -13.43144 -13.04903 -12.98940 -12.79821 -12.46804 -12.39628 -11.86840 -11.74982 -11.56920 -11.43541 -11.30508 -11.26514 -11.05726 -10.61005 -10.36676 -9.57685 -9.52524 -9.26439 -8.93852 -8.92349 -8.16622 -6.83991 -6.63779 -4.31290 -0.45895 -0.08002 1.04124 1.38348 1.93879 2.41430 2.88153 3.00104 3.04905 3.12216 3.29781 3.43218 3.62374 3.78228 3.79779 4.29107 4.31547 4.50771 4.56721 4.86560 4.94519 4.95959 5.03623 5.15254 5.43009 5.69029 5.96060 6.14589 6.31521 6.73246 6.84099 6.92519 7.12373 7.75537 7.94463 8.13560 8.43244 8.64609 9.27023 9.55626 10.31874 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.002165 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.294721 B =12927.284858 C =13524.419367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.527 3.473 3 O -0.931 6.931 4 O -0.930 6.930 5 C -0.815 4.815 6 C -0.007 4.007 7 C -0.099 4.099 8 C -0.194 4.194 9 C 0.560 3.440 10 O -0.514 6.514 11 N -0.609 5.609 12 C -0.066 4.066 13 C -0.027 4.027 14 N -0.260 5.260 15 N -0.138 5.138 16 C -0.321 4.321 17 H 0.118 0.882 18 C 0.046 3.954 19 N -0.767 5.767 20 Si 0.937 3.063 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.081 4.081 25 S 0.304 5.696 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.395 0.605 32 H 0.177 0.823 33 H 0.277 0.723 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 1.977 -20.318 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.703 3.297 3 O -0.929 6.929 4 O -0.927 6.927 5 C -1.017 5.017 6 C -0.044 4.044 7 C -0.132 4.132 8 C -0.317 4.317 9 C 0.344 3.656 10 O -0.392 6.392 11 N -0.251 5.251 12 C -0.172 4.172 13 C -0.202 4.202 14 N -0.091 5.091 15 N 0.095 4.905 16 C -0.454 4.454 17 H 0.135 0.865 18 C -0.172 4.172 19 N -0.393 5.393 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.233 4.233 25 S 0.575 5.425 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.177 0.823 30 H 0.181 0.819 31 H 0.228 0.772 32 H 0.194 0.806 33 H 0.088 0.912 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.330 2.549 -18.834 20.751 hybrid contribution -0.612 -0.666 -0.147 0.917 sum -8.942 1.883 -18.981 21.066 Atomic orbital electron populations 1.30220 1.25083 1.12456 1.12094 1.04616 0.77892 0.74418 0.72814 1.93614 1.77563 1.36112 1.85574 1.93591 1.77554 1.61810 1.59738 1.34934 1.29637 1.08799 1.28322 1.19797 0.93638 0.94124 0.96807 1.20955 1.00180 1.00022 0.92007 1.25524 1.08695 0.98656 0.98844 1.16733 0.80538 0.84473 0.83806 1.90758 1.49527 1.31697 1.67240 1.42369 1.66137 1.07597 1.08981 1.17202 1.22267 0.94796 0.82891 1.24137 1.06205 0.98907 0.90996 1.78293 1.25380 0.88206 1.17179 1.44584 1.36137 1.04782 1.04957 1.19880 1.49221 0.90620 0.85661 0.86468 1.25674 0.95498 0.96331 0.99688 1.70204 1.33091 1.09943 1.26071 0.85862 0.79484 0.79371 0.79266 1.19082 1.20073 1.19074 1.21254 1.17806 0.97175 0.87043 1.82920 1.60005 1.05572 0.94040 0.84722 0.84724 0.84654 0.82291 0.81853 0.77199 0.80605 0.91248 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.05 10.80 101.05 1.09 -0.96 16 2 S 2.53 19.16 5.92 -107.50 -0.64 18.53 16 3 O -0.93 -10.02 17.68 -57.54 -1.02 -11.04 16 4 O -0.93 -9.72 17.58 -57.54 -1.01 -10.73 16 5 C -0.81 -7.49 6.01 29.18 0.18 -7.32 16 6 C -0.01 -0.07 9.71 -41.41 -0.40 -0.47 16 7 C -0.10 -1.14 10.01 -40.43 -0.40 -1.54 16 8 C -0.19 -2.57 6.45 -36.80 -0.24 -2.81 16 9 C 0.56 9.82 7.75 -12.90 -0.10 9.72 16 10 O -0.51 -10.81 13.98 5.17 0.07 -10.74 16 11 N -0.61 -10.77 5.46 -11.21 -0.06 -10.83 16 12 C -0.07 -1.49 6.90 -83.86 -0.58 -2.07 16 13 C -0.03 -0.69 10.85 -17.03 -0.18 -0.88 16 14 N -0.26 -7.41 10.40 30.80 0.32 -7.09 16 15 N -0.14 -3.70 3.74 -11.41 -0.04 -3.74 16 16 C -0.32 -8.29 10.25 -14.82 -0.15 -8.44 16 17 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16 18 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 19 N -0.77 -21.02 11.81 55.50 0.66 -20.36 16 20 Si 0.94 18.47 29.55 -169.99 -5.02 13.44 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 24 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 25 S 0.30 3.12 21.84 -107.50 -2.35 0.77 16 26 H 0.13 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.16 1.06 7.97 -52.49 -0.42 0.64 16 30 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.39 5.46 7.94 -40.82 -0.32 5.14 16 32 H 0.18 4.48 5.91 -52.48 -0.31 4.16 16 33 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 34 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -37.09 333.50 -7.86 -44.95 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -2.71 Total: 7.58 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.08 Total: -15.76 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.87 Total: -42.03 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.96 Total: -32.51 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 16 Polarization: 22.28 SS G_CDS: -2.98 Total: 19.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.09 -7.86 -44.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433623477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.290 kcal (2) G-P(sol) polarization free energy of solvation -37.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds