Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42100 * 110.54169 * 2 1 4 4 O 1.42105 * 110.54176 * 223.25504 * 2 1 3 5 5 C 1.76198 * 104.45299 * 111.62733 * 2 1 3 6 6 C 1.33814 * 124.51844 * 89.99555 * 5 2 1 7 7 C 1.37477 * 115.09925 * 179.97438 * 6 5 2 8 8 C 1.36659 * 113.29610 * 0.02562 * 7 6 5 9 9 C 1.46568 * 125.46036 * 180.02562 * 8 7 6 10 10 O 1.21724 * 120.00180 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99700 * 180.02562 * 9 8 7 12 12 C 1.40540 * 119.99882 * 180.02562 * 11 9 8 13 13 C 1.40665 * 126.08241 * 0.02562 * 12 11 9 14 14 N 1.30904 * 108.39147 * 179.97438 * 13 12 11 15 15 N 1.40078 * 108.40781 * 0.02562 * 14 13 12 16 16 C 1.37314 * 126.06970 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00123 * 180.02562 * 16 15 14 18 18 C 1.38992 * 119.99909 * 0.02562 * 16 15 14 19 19 N 1.31296 * 119.99760 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47054 * 59.99784 * 20 18 16 22 22 H 1.48500 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47250 * 300.00105 * 20 18 16 24 24 C 1.35690 * 126.08863 * 179.97438 * 12 11 9 25 25 S 1.70616 * 124.52309 * 270.27594 * 5 2 1 26 26 H 1.08992 * 109.47212 * 308.37002 * 1 2 3 27 27 H 1.08999 * 109.47217 * 68.37611 * 1 2 3 28 28 H 1.09002 * 109.47148 * 188.36894 * 1 2 3 29 29 H 1.07998 * 122.45029 * 359.97438 * 6 5 2 30 30 H 1.07997 * 123.35556 * 180.02562 * 7 6 5 31 31 H 0.96997 * 120.00338 * 359.97438 * 11 9 8 32 32 H 1.08005 * 125.80678 * 359.71000 * 13 12 11 33 33 H 0.97006 * 119.99927 * 180.02562 * 19 18 16 34 34 H 1.08005 * 126.24092 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9119 5 6 2.2538 -0.6289 1.5861 6 6 2.4429 -1.9244 1.8624 7 6 2.7820 -2.1993 3.1660 8 6 2.8638 -1.0830 3.9500 9 6 3.2050 -1.0681 5.3753 10 8 3.4435 -2.1115 5.9550 11 7 3.2536 0.1009 6.0444 12 6 3.5813 0.1153 7.4110 13 6 3.8806 -1.0080 8.2030 14 7 4.1348 -0.5992 9.4203 15 7 4.0078 0.7954 9.4541 16 6 4.1947 1.5978 10.5526 17 1 4.0702 2.6672 10.4677 18 6 4.5441 1.0337 11.7740 19 7 4.6949 -0.2665 11.8773 20 14 4.7976 2.1251 13.2685 21 1 3.5429 2.8640 13.5604 22 1 5.1620 1.2860 14.4382 23 1 5.8899 3.0933 12.9949 24 6 3.6662 1.2152 8.2011 25 16 2.4885 0.3321 2.9762 26 1 -0.3633 0.6379 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1496 29 1 2.3370 -2.6976 1.1158 30 1 2.9654 -3.1979 3.5339 31 1 3.0631 0.9324 5.5826 32 1 3.8939 -2.0338 7.8653 33 1 4.9384 -0.6602 12.7298 34 1 3.4941 2.2364 7.8944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433623477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -6.176998 kcal Electronic energy + Delta-G solvation = -23399.308827 eV Core-core repulsion = 19552.826166 eV Total energy + Delta-G solvation = -3846.482660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.034 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82922 -40.51051 -38.72911 -38.09167 -37.04697 -36.06675 -35.08449 -32.38690 -31.54877 -30.29643 -29.59495 -27.18690 -26.12275 -23.34187 -22.75335 -21.54714 -21.22534 -20.25425 -19.58479 -19.10879 -17.65617 -17.42561 -17.38123 -17.20060 -16.70662 -16.46354 -16.39218 -15.85942 -15.45884 -15.22708 -14.91862 -14.49636 -14.30720 -13.95248 -13.87629 -13.62636 -13.49236 -13.38752 -13.18733 -13.11152 -12.91756 -12.89510 -12.64225 -12.16274 -12.14266 -11.98787 -11.91120 -11.11330 -11.07092 -10.86462 -10.45582 -10.14856 -9.74844 -8.63609 -8.49557 -6.27674 -1.13248 -0.87858 0.18180 0.51981 0.97330 1.30015 1.39693 1.56368 1.68014 1.79256 1.88417 1.93105 2.18830 2.48589 2.83773 2.90532 3.06910 3.26338 3.64385 4.03780 4.12773 4.15424 4.33652 4.38731 4.50234 4.61765 4.82040 4.96666 4.99006 5.01866 5.13267 5.21263 5.29759 5.91215 6.22748 6.47340 6.68290 7.09147 7.40874 7.61496 8.49491 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.002165 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.294721 B =12927.284858 C =13524.419367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 S 2.526 3.474 3 O -0.968 6.968 4 O -0.962 6.962 5 C -0.802 4.802 6 C -0.012 4.012 7 C -0.087 4.087 8 C -0.237 4.237 9 C 0.565 3.435 10 O -0.557 6.557 11 N -0.607 5.607 12 C -0.051 4.051 13 C -0.054 4.054 14 N -0.309 5.309 15 N -0.164 5.164 16 C -0.353 4.353 17 H 0.144 0.856 18 C -0.007 4.007 19 N -0.823 5.823 20 Si 1.020 2.980 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.253 1.253 24 C -0.077 4.077 25 S 0.338 5.662 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.188 0.812 30 H 0.163 0.837 31 H 0.415 0.585 32 H 0.169 0.831 33 H 0.278 0.722 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.308 4.038 -22.577 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.704 3.296 3 O -0.966 6.966 4 O -0.959 6.959 5 C -1.003 5.003 6 C -0.047 4.047 7 C -0.121 4.121 8 C -0.360 4.360 9 C 0.352 3.648 10 O -0.437 6.437 11 N -0.251 5.251 12 C -0.158 4.158 13 C -0.230 4.230 14 N -0.140 5.140 15 N 0.068 4.932 16 C -0.484 4.484 17 H 0.161 0.839 18 C -0.219 4.219 19 N -0.450 5.450 20 Si 0.839 3.161 21 H -0.176 1.176 22 H -0.203 1.203 23 H -0.177 1.177 24 C -0.227 4.227 25 S 0.610 5.390 26 H 0.173 0.827 27 H 0.179 0.821 28 H 0.178 0.822 29 H 0.205 0.795 30 H 0.181 0.819 31 H 0.252 0.748 32 H 0.186 0.814 33 H 0.087 0.913 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.232 4.646 -21.131 23.933 hybrid contribution -0.152 -1.340 0.192 1.362 sum -10.384 3.306 -20.939 23.605 Atomic orbital electron populations 1.30047 1.18100 1.14871 1.14515 1.04702 0.80393 0.72950 0.71524 1.93572 1.80062 1.37355 1.85562 1.93554 1.79963 1.62291 1.60105 1.35386 1.27572 1.08718 1.28606 1.19991 0.93507 0.94952 0.96263 1.21186 0.98446 0.99696 0.92786 1.25073 1.12777 1.01167 0.96974 1.17306 0.78584 0.83523 0.85358 1.90730 1.50978 1.33115 1.68860 1.42262 1.66655 1.08971 1.07192 1.17251 1.20138 0.93527 0.84836 1.24185 1.07679 0.99647 0.91440 1.78182 1.27115 0.90048 1.18701 1.44868 1.37538 1.04293 1.06482 1.20635 1.49867 0.91833 0.86051 0.83918 1.26913 0.94302 0.97658 1.02980 1.70389 1.35232 1.12458 1.26964 0.84634 0.80067 0.77126 0.74282 1.17591 1.20344 1.17725 1.21995 1.15832 0.99078 0.85831 1.82768 1.59077 1.03725 0.93425 0.82740 0.82108 0.82241 0.79482 0.81901 0.74845 0.81373 0.91276 0.79201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.71 10.80 113.37 1.22 0.52 16 2 S 2.53 31.11 5.92 -56.49 -0.33 30.78 16 3 O -0.97 -18.88 17.68 -127.65 -2.26 -21.14 16 4 O -0.96 -17.96 17.58 -127.65 -2.24 -20.20 16 5 C -0.80 -12.64 6.01 66.81 0.40 -12.24 16 6 C -0.01 -0.19 9.71 21.08 0.20 0.02 16 7 C -0.09 -1.90 10.01 21.72 0.22 -1.68 16 8 C -0.24 -6.12 6.45 24.07 0.16 -5.97 16 9 C 0.57 20.10 7.75 86.41 0.67 20.77 16 10 O -0.56 -24.43 13.98 -4.42 -0.06 -24.50 16 11 N -0.61 -21.33 5.46 -307.57 -1.68 -23.01 16 12 C -0.05 -2.36 6.90 37.75 0.26 -2.10 16 13 C -0.05 -2.95 10.85 85.42 0.93 -2.03 16 14 N -0.31 -18.51 10.40 -56.45 -0.59 -19.10 16 15 N -0.16 -8.98 3.74 -190.00 -0.71 -9.69 16 16 C -0.35 -18.37 10.25 84.02 0.86 -17.50 16 17 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 18 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 19 N -0.82 -47.09 11.81 21.66 0.26 -46.83 16 20 Si 1.02 37.91 29.55 68.60 2.03 39.94 16 21 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 22 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 24 C -0.08 -3.50 11.49 83.38 0.96 -2.54 16 25 S 0.34 6.24 21.84 -56.49 -1.23 5.00 16 26 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.16 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.16 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.19 1.90 7.97 -2.91 -0.02 1.87 16 30 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.41 10.93 7.94 -92.71 -0.74 10.20 16 32 H 0.17 9.20 5.91 -2.91 -0.02 9.18 16 33 H 0.28 14.62 8.31 -92.70 -0.77 13.85 16 34 H 0.19 6.72 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -86.55 333.50 -0.03 -86.58 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.45 Total: 24.79 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 6.35 Total: -22.62 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -2.72 Total: -98.63 kcal Atomic # 8 Polarization: -61.27 SS G_CDS: -4.56 Total: -65.84 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: 37.35 SS G_CDS: -1.57 Total: 35.78 kcal Total: -86.55 -0.03 -86.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433623477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.406 kcal (2) G-P(sol) polarization free energy of solvation -86.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds