Wall clock time and date at job start Sat Apr 11 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47360 * 300.00512 * 3 2 1 6 6 H 1.48502 * 109.47062 * 60.00458 * 3 2 1 7 7 C 1.39013 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00231 * 179.97438 * 7 2 1 9 9 N 1.36914 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99823 * 180.02562 * 9 7 2 11 11 O 1.21624 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.47415 * 119.99799 * 180.02562 * 10 9 7 13 13 C 1.39963 * 120.16234 * 269.99813 * 12 10 9 14 14 F 1.35099 * 120.08175 * 0.02562 * 13 12 10 15 15 C 1.38326 * 119.83251 * 180.02562 * 13 12 10 16 16 F 1.35101 * 119.91315 * 179.97438 * 15 13 12 17 17 C 1.38591 * 120.16547 * 0.02562 * 15 13 12 18 18 Br 1.89100 * 119.83392 * 179.97438 * 17 15 13 19 19 C 1.38587 * 120.32735 * 0.25634 * 17 15 13 20 20 F 1.35105 * 119.91889 * 179.72287 * 19 17 15 21 21 C 1.38332 * 120.16617 * 359.48556 * 19 17 15 22 22 F 1.35096 * 120.08384 * 180.25241 * 21 19 17 23 23 H 0.96996 * 119.99939 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00225 * 0.02562 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3464 -0.0006 5 1 1.8890 2.3966 -1.2125 6 1 1.8892 2.3964 1.2126 7 6 2.0090 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2145 -3.5568 -0.0001 12 6 1.2612 -4.8334 -0.0011 13 6 0.9092 -5.4427 1.2087 14 9 1.2435 -4.8621 2.3819 15 6 0.2180 -6.6409 1.2002 16 9 -0.1222 -7.2307 2.3671 17 6 -0.1254 -7.2383 -0.0022 18 35 -1.0696 -8.8767 -0.0029 19 6 0.2249 -6.6438 -1.2041 20 9 -0.1092 -7.2362 -2.3715 21 6 0.9115 -5.4429 -1.2116 22 9 1.2476 -4.8623 -2.3842 23 1 -0.4850 0.8400 0.0004 24 1 0.3544 -2.3896 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442981837.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:59 Heat of formation + Delta-G solvation = -175.015958 kcal Electronic energy + Delta-G solvation = -21268.521863 eV Core-core repulsion = 16922.050642 eV Total energy + Delta-G solvation = -4346.471221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 340.942 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.80537 -49.74052 -48.79685 -48.78410 -39.30950 -37.74742 -34.28509 -32.79075 -31.52044 -30.17795 -29.88112 -25.69846 -23.91535 -23.34770 -20.48843 -18.87097 -18.58610 -18.27833 -17.96395 -17.11716 -16.76224 -16.23074 -16.09800 -15.80851 -15.31252 -15.03057 -14.95399 -14.78381 -14.46690 -14.16531 -13.65655 -13.26474 -13.23315 -12.40301 -12.26379 -12.24262 -11.79785 -11.24822 -10.99339 -10.82554 -10.52552 -10.43291 -9.80940 -9.28700 -8.91155 -8.88949 -8.29511 -6.69397 -4.10289 0.03251 0.24922 0.81341 2.46415 2.89066 2.98039 3.16107 3.20017 3.23166 3.55032 3.62845 3.84294 4.13185 4.13328 4.58218 4.68739 4.90136 4.97012 5.28136 5.56443 5.78522 6.14544 7.30906 7.71216 8.22538 8.85542 9.14409 9.61966 10.46587 Molecular weight = 340.94amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.003781 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.262063 B = 7403.875029 C = 7904.378657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.523 5.523 10 C 0.459 3.541 11 O -0.568 6.568 12 C -0.086 4.086 13 C 0.125 3.875 14 F -0.095 7.095 15 C 0.112 3.888 16 F -0.100 7.100 17 C -0.127 4.127 18 Br 0.017 6.983 19 C 0.112 3.888 20 F -0.100 7.100 21 C 0.125 3.875 22 F -0.095 7.095 23 H 0.278 0.722 24 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 -15.699 -0.005 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.435 4.435 8 H 0.130 0.870 9 N -0.155 5.155 10 C 0.243 3.757 11 O -0.454 6.454 12 C -0.092 4.092 13 C 0.103 3.897 14 F -0.073 7.073 15 C 0.089 3.911 16 F -0.078 7.078 17 C -0.209 4.209 18 Br 0.102 6.898 19 C 0.089 3.911 20 F -0.078 7.078 21 C 0.103 3.897 22 F -0.073 7.073 23 H 0.088 0.912 24 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.390 -16.116 -0.006 16.993 hybrid contribution -0.110 1.060 0.000 1.066 sum -5.500 -15.055 -0.006 16.029 Atomic orbital electron populations 1.69607 1.06214 1.29022 1.47481 1.25433 0.95716 1.00260 0.95963 0.85676 0.79832 0.80133 0.78031 1.18799 1.20339 1.20335 1.19871 0.93818 0.81459 1.48381 0.87019 1.41814 1.09527 1.04240 1.59955 1.16806 0.87384 0.81995 0.89536 1.90711 1.11963 1.85557 1.57145 1.20461 0.98805 1.00156 0.89807 1.17095 0.99133 0.91125 0.82350 1.91655 1.89686 1.82948 1.43010 1.16643 1.00890 0.91985 0.81586 1.91626 1.89826 1.82515 1.43877 1.21469 1.08087 0.98830 0.92510 1.96835 1.72250 1.21547 1.99144 1.16645 1.00968 0.91913 0.81578 1.91627 1.89982 1.82403 1.43833 1.17097 0.99180 0.91066 0.82357 1.91654 1.89636 1.82954 1.43054 0.91200 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.71 13.05 55.50 0.72 -21.99 14 2 C 0.03 0.78 5.50 -17.46 -0.10 0.68 14 3 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 14 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 14 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 7 C -0.31 -8.13 9.68 -14.99 -0.15 -8.28 14 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 14 9 N -0.52 -12.90 5.28 -11.96 -0.06 -12.96 14 10 C 0.46 10.81 6.48 -12.52 -0.08 10.73 14 11 O -0.57 -15.35 16.68 5.26 0.09 -15.27 14 12 C -0.09 -1.60 5.64 -104.87 -0.59 -2.19 14 13 C 0.13 2.07 7.29 -38.90 -0.28 1.79 14 14 F -0.10 -1.71 16.74 2.25 0.04 -1.67 14 15 C 0.11 1.56 7.26 -39.42 -0.29 1.28 14 16 F -0.10 -1.34 16.62 2.25 0.04 -1.30 14 17 C -0.13 -1.66 6.24 -39.32 -0.25 -1.91 14 18 Br 0.02 0.18 32.82 -68.01 -2.23 -2.05 14 19 C 0.11 1.56 7.26 -39.42 -0.29 1.28 14 20 F -0.10 -1.34 16.62 2.25 0.04 -1.30 14 21 C 0.13 2.08 7.29 -38.90 -0.28 1.79 14 22 F -0.10 -1.71 16.74 2.25 0.04 -1.67 14 23 H 0.28 6.68 8.31 -40.82 -0.34 6.34 14 24 H 0.40 9.34 7.88 -40.82 -0.32 9.02 14 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -27.60 271.39 -4.40 -32.00 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.17 Total: 2.16 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.30 Total: 5.19 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.66 Total: -34.95 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.15 Total: -5.94 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.23 Total: -2.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.60 -4.40 -32.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442981837.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.017 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds