Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47360 * 300.00512 * 3 2 1 6 6 H 1.48502 * 109.47062 * 60.00458 * 3 2 1 7 7 C 1.39013 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00231 * 179.97438 * 7 2 1 9 9 N 1.36914 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99823 * 180.02562 * 9 7 2 11 11 O 1.21624 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.47415 * 119.99799 * 180.02562 * 10 9 7 13 13 C 1.39963 * 120.16234 * 269.99813 * 12 10 9 14 14 F 1.35099 * 120.08175 * 0.02562 * 13 12 10 15 15 C 1.38326 * 119.83251 * 180.02562 * 13 12 10 16 16 F 1.35101 * 119.91315 * 179.97438 * 15 13 12 17 17 C 1.38591 * 120.16547 * 0.02562 * 15 13 12 18 18 Br 1.89100 * 119.83392 * 179.97438 * 17 15 13 19 19 C 1.38587 * 120.32735 * 0.25634 * 17 15 13 20 20 F 1.35105 * 119.91889 * 179.72287 * 19 17 15 21 21 C 1.38332 * 120.16617 * 359.48556 * 19 17 15 22 22 F 1.35096 * 120.08384 * 180.25241 * 21 19 17 23 23 H 0.96996 * 119.99939 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00225 * 0.02562 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3464 -0.0006 5 1 1.8890 2.3966 -1.2125 6 1 1.8892 2.3964 1.2126 7 6 2.0090 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2145 -3.5568 -0.0001 12 6 1.2612 -4.8334 -0.0011 13 6 0.9092 -5.4427 1.2087 14 9 1.2435 -4.8621 2.3819 15 6 0.2180 -6.6409 1.2002 16 9 -0.1222 -7.2307 2.3671 17 6 -0.1254 -7.2383 -0.0022 18 35 -1.0696 -8.8767 -0.0029 19 6 0.2249 -6.6438 -1.2041 20 9 -0.1092 -7.2362 -2.3715 21 6 0.9115 -5.4429 -1.2116 22 9 1.2476 -4.8623 -2.3842 23 1 -0.4850 0.8400 0.0004 24 1 0.3544 -2.3896 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442981837.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -191.375250 kcal Electronic energy + Delta-G solvation = -21269.231255 eV Core-core repulsion = 16922.050642 eV Total energy + Delta-G solvation = -4347.180614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 340.942 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.05854 -50.99614 -50.08657 -50.07264 -40.89581 -39.35735 -36.25402 -34.09378 -33.38915 -31.44784 -31.15820 -27.49998 -25.43203 -24.61689 -22.14074 -20.41739 -20.15115 -19.67269 -19.46250 -18.42300 -18.02070 -17.87215 -17.34740 -17.11621 -16.88908 -16.58156 -16.31518 -16.01889 -15.91946 -15.73943 -15.30708 -15.04351 -14.70677 -13.70581 -13.61778 -13.57404 -13.50753 -12.98253 -12.57561 -12.22483 -12.07486 -11.79675 -11.70219 -10.96380 -10.38089 -10.25904 -10.16057 -8.63399 -6.14264 -1.24941 -1.00545 -0.28395 1.17634 1.17803 1.42455 1.56680 1.59066 1.71843 2.14828 2.18295 2.33145 2.52636 2.79852 3.09081 3.20944 3.45090 3.48918 3.85640 4.03869 4.28446 4.82834 5.29074 5.74233 6.27988 6.88281 7.19546 7.70561 8.53100 Molecular weight = 340.94amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.003781 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.262063 B = 7403.875029 C = 7904.378657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.001 4.001 3 Si 1.002 2.998 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.343 4.343 8 H 0.091 0.909 9 N -0.530 5.530 10 C 0.462 3.538 11 O -0.611 6.611 12 C -0.106 4.106 13 C 0.122 3.878 14 F -0.107 7.107 15 C 0.134 3.866 16 F -0.090 7.090 17 C -0.113 4.113 18 Br 0.052 6.948 19 C 0.134 3.866 20 F -0.090 7.090 21 C 0.122 3.878 22 F -0.107 7.107 23 H 0.286 0.714 24 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -16.802 -0.006 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.204 4.204 3 Si 0.824 3.176 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.109 0.891 9 N -0.162 5.162 10 C 0.248 3.752 11 O -0.499 6.499 12 C -0.112 4.112 13 C 0.100 3.900 14 F -0.085 7.085 15 C 0.111 3.889 16 F -0.068 7.068 17 C -0.195 4.195 18 Br 0.137 6.863 19 C 0.111 3.889 20 F -0.068 7.068 21 C 0.100 3.900 22 F -0.085 7.085 23 H 0.096 0.904 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.624 -17.238 -0.006 18.467 hybrid contribution 0.170 1.231 0.000 1.243 sum -6.453 -16.007 -0.006 17.259 Atomic orbital electron populations 1.69654 1.07151 1.30307 1.47112 1.26244 0.96578 1.02845 0.94699 0.84749 0.78173 0.76027 0.78672 1.19324 1.19168 1.19158 1.19864 0.93294 0.82992 1.51051 0.89124 1.41860 1.09597 1.04442 1.60300 1.17357 0.87158 0.83209 0.87477 1.90663 1.14063 1.86792 1.58399 1.19900 1.01092 0.98599 0.91600 1.17065 0.99815 0.91948 0.81202 1.91623 1.89975 1.83383 1.43527 1.16357 0.99628 0.90762 0.82166 1.91662 1.89519 1.82104 1.43504 1.21588 1.06797 0.99573 0.91553 1.96906 1.71225 1.19050 1.99087 1.16360 0.99709 0.90688 0.82159 1.91663 1.89678 1.81991 1.43460 1.17067 0.99860 0.91891 0.81209 1.91622 1.89926 1.83388 1.43571 0.90429 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.45 13.05 21.67 0.28 -46.16 14 2 C 0.00 -0.05 5.50 84.95 0.47 0.42 14 3 Si 1.00 40.55 29.55 68.60 2.03 42.57 14 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 14 5 H -0.27 -10.29 7.11 99.48 0.71 -9.59 14 6 H -0.27 -10.29 7.11 99.48 0.71 -9.58 14 7 C -0.34 -18.85 9.68 84.09 0.81 -18.04 14 8 H 0.09 5.27 7.15 -2.91 -0.02 5.25 14 9 N -0.53 -27.09 5.28 -310.00 -1.64 -28.73 14 10 C 0.46 22.60 6.48 86.66 0.56 23.16 14 11 O -0.61 -34.49 16.68 -4.11 -0.07 -34.56 14 12 C -0.11 -3.97 5.64 -20.02 -0.11 -4.08 14 13 C 0.12 3.98 7.29 22.71 0.17 4.15 14 14 F -0.11 -3.86 16.74 44.97 0.75 -3.11 14 15 C 0.13 3.47 7.26 22.38 0.16 3.63 14 16 F -0.09 -2.16 16.62 44.97 0.75 -1.41 14 17 C -0.11 -2.65 6.24 22.44 0.14 -2.51 14 18 Br 0.05 0.96 32.82 -20.37 -0.67 0.29 14 19 C 0.13 3.47 7.26 22.38 0.16 3.63 14 20 F -0.09 -2.16 16.62 44.97 0.75 -1.41 14 21 C 0.12 3.98 7.29 22.71 0.17 4.15 14 22 F -0.11 -3.86 16.74 44.97 0.75 -3.11 14 23 H 0.29 13.54 8.31 -92.71 -0.77 12.77 14 24 H 0.40 19.46 7.88 -92.71 -0.73 18.72 14 Total: -1.00 -59.91 271.39 6.06 -53.85 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.60 Total: 7.28 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 2.53 Total: 14.51 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.35 Total: -74.89 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.07 Total: -34.56 kcal Atomic # 9 Polarization: -12.05 SS G_CDS: 3.00 Total: -9.05 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 35 Polarization: 0.96 SS G_CDS: -0.67 Total: 0.29 kcal Total: -59.91 6.06 -53.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442981837.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.527 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds