Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99699 * 2 1 4 4 H 1.48497 * 109.47146 * 269.99399 * 3 2 1 5 5 H 1.48500 * 109.47421 * 29.99591 * 3 2 1 6 6 H 1.48504 * 109.46873 * 149.99658 * 3 2 1 7 7 C 1.37877 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00280 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99637 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99757 * 179.97438 * 10 9 7 12 12 O 1.21631 * 120.00738 * 359.97438 * 11 10 9 13 13 C 1.47273 * 119.99416 * 179.97438 * 11 10 9 14 14 N 1.34836 * 126.04604 * 0.02562 * 13 11 10 15 15 C 1.32138 * 109.11964 * 179.97438 * 14 13 11 16 16 C 1.41285 * 131.85018 * 179.97438 * 15 14 13 17 17 C 1.35819 * 119.39271 * 180.02562 * 16 15 14 18 18 C 1.40711 * 119.77587 * 359.97438 * 17 16 15 19 19 Br 1.89096 * 119.82950 * 180.02562 * 18 17 16 20 20 C 1.34846 * 120.33595 * 0.02562 * 18 17 16 21 21 N 1.36897 * 120.62104 * 359.69838 * 20 18 17 22 22 C 1.36242 * 132.19404 * 179.58608 * 21 20 18 23 23 F 1.35104 * 126.55435 * 0.75119 * 22 21 20 24 24 H 0.96993 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47259 * 59.99567 * 9 7 2 26 26 H 1.09005 * 109.46638 * 300.00017 * 9 7 2 27 27 H 0.97004 * 119.99849 * 359.97438 * 10 9 7 28 28 H 1.08005 * 120.30286 * 359.97438 * 16 15 14 29 29 H 1.07999 * 120.11766 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.68981 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0000 -2.5753 0.0010 11 6 5.3250 -2.8215 0.0009 12 8 6.1155 -1.8970 0.0005 13 6 5.8159 -4.2100 0.0014 14 7 5.0524 -5.3214 0.0014 15 6 5.8365 -6.3851 0.0013 16 6 5.5486 -7.7683 0.0017 17 6 6.5714 -8.6620 0.0020 18 6 7.9012 -8.2021 0.0014 19 35 9.3263 -9.4450 0.0011 20 6 8.1645 -6.8796 0.0009 21 7 7.1453 -5.9657 -0.0050 22 6 7.1377 -4.6033 0.0005 23 9 8.2186 -3.7927 -0.0001 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.3696 -3.3126 0.0010 28 1 4.5247 -8.1118 0.0027 29 1 6.3648 -9.7220 0.0028 30 1 9.1891 -6.5381 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556403352.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -0.713768 kcal Electronic energy + Delta-G solvation = -20281.069426 eV Core-core repulsion = 16652.139101 eV Total energy + Delta-G solvation = -3628.930325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.992 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.37830 -44.17586 -40.63740 -38.62738 -36.28326 -35.17259 -34.42077 -33.28941 -30.93248 -29.91240 -29.72113 -26.10320 -24.50410 -24.03529 -23.42632 -21.64069 -20.05988 -19.37493 -18.54072 -18.32083 -18.17242 -17.35993 -16.87473 -16.44020 -16.28363 -16.26661 -16.03750 -15.85176 -15.09358 -14.82987 -14.38104 -14.28313 -13.65583 -13.59800 -13.29746 -13.09234 -12.70706 -12.57556 -11.92301 -11.88007 -11.66496 -11.58657 -11.56283 -11.34807 -10.91422 -10.23756 -9.95378 -9.21774 -8.38748 -6.46701 -0.85694 -0.32658 -0.04442 0.55975 0.78123 1.35431 1.36837 1.50055 1.89427 2.13157 2.21383 2.29946 2.64225 2.91353 2.96060 3.09200 3.28328 3.49232 3.76885 3.89502 4.34968 4.63068 4.68308 4.73233 4.87484 4.98558 5.11456 5.21795 5.34559 5.43257 5.99400 6.13419 6.51668 6.68372 7.04602 7.22268 8.76140 Molecular weight = 340.99amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.002365 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.971388 B =11836.084464 C =12561.910614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.230 3.770 10 N -0.681 5.681 11 C 0.583 3.417 12 O -0.575 6.575 13 C -0.002 4.002 14 N -0.460 5.460 15 C 0.247 3.753 16 C -0.062 4.062 17 C -0.059 4.059 18 C -0.098 4.098 19 Br 0.015 6.985 20 C 0.077 3.923 21 N -0.378 5.378 22 C 0.170 3.830 23 F -0.077 7.077 24 H 0.273 0.727 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.413 0.587 28 H 0.197 0.803 29 H 0.197 0.803 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.088 -27.141 0.010 34.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.107 3.893 10 N -0.329 5.329 11 C 0.368 3.632 12 O -0.455 6.455 13 C -0.136 4.136 14 N -0.180 5.180 15 C 0.001 3.999 16 C -0.082 4.082 17 C -0.084 4.084 18 C -0.180 4.180 19 Br 0.100 6.900 20 C -0.046 4.046 21 N -0.056 5.056 22 C 0.036 3.964 23 F -0.056 7.056 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.249 0.751 28 H 0.214 0.786 29 H 0.214 0.786 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 21.171 -26.679 0.002 34.058 hybrid contribution 0.606 1.338 -0.017 1.469 sum 21.776 -25.340 -0.015 33.412 Atomic orbital electron populations 1.69986 1.07720 1.28704 1.50450 1.25604 0.95592 1.02697 0.93395 0.85836 0.79338 0.79017 0.79611 1.18801 1.19665 1.18178 1.21229 0.89657 0.94718 1.53077 0.92455 1.19285 0.93731 0.79745 0.96489 1.45850 1.05704 1.10667 1.70632 1.17048 0.83039 0.85802 0.77271 1.90781 1.56301 1.45177 1.53283 1.20492 0.88074 0.94003 1.11058 1.70988 1.30536 0.95471 1.21055 1.21477 0.76911 0.96728 1.04777 1.20832 1.03704 0.83896 0.99781 1.21475 0.88016 1.03015 0.95878 1.21514 0.96495 0.92001 1.07995 1.96900 1.41532 1.54106 1.97463 1.22069 0.93533 0.87808 1.01162 1.42755 1.10292 1.04319 1.48271 1.17245 0.84858 0.78697 1.15638 1.91659 1.51563 1.67831 1.94528 0.91746 0.95992 0.96115 0.75056 0.78572 0.78632 0.78951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16 2 C 0.03 1.59 5.47 84.65 0.46 2.05 16 3 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -12.07 6.54 99.48 0.65 -11.41 16 7 C -0.55 -31.43 9.83 25.60 0.25 -31.18 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.85 4.50 85.64 0.38 12.24 16 10 N -0.68 -30.94 5.54 -470.23 -2.61 -33.55 16 11 C 0.58 25.55 7.81 86.62 0.68 26.23 16 12 O -0.57 -28.24 16.47 -4.13 -0.07 -28.31 16 13 C 0.00 -0.07 6.99 40.98 0.29 0.22 16 14 N -0.46 -14.50 11.01 -182.49 -2.01 -16.51 16 15 C 0.25 5.78 7.79 134.20 1.05 6.82 16 16 C -0.06 -0.79 10.11 22.46 0.23 -0.57 16 17 C -0.06 -0.47 9.81 22.31 0.22 -0.26 16 18 C -0.10 -1.03 6.19 22.09 0.14 -0.89 16 19 Br 0.02 0.12 33.68 -20.37 -0.69 -0.57 16 20 C 0.08 1.15 10.64 83.12 0.88 2.04 16 21 N -0.38 -8.77 2.94 -351.30 -1.03 -9.80 16 22 C 0.17 5.26 8.84 83.93 0.74 6.01 16 23 F -0.08 -2.44 16.82 44.97 0.76 -1.69 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 26 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 27 H 0.41 17.65 8.02 -92.71 -0.74 16.90 16 28 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.20 0.14 8.06 -2.91 -0.02 0.11 16 30 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -73.18 299.72 2.27 -70.91 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.42 Total: 6.48 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 5.32 Total: 22.71 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -5.35 Total: -115.98 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.07 Total: -28.31 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.76 Total: -1.69 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -73.18 2.27 -70.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556403352.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.193 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds