Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.39720 * 119.99879 * 179.97438 * 10 9 7 12 12 C 1.38913 * 119.95864 * 359.72983 * 11 10 9 13 13 C 1.38004 * 120.06211 * 179.76344 * 12 11 10 14 14 Br 1.89099 * 120.01683 * 180.25592 * 13 12 11 15 15 C 1.39438 * 119.97022 * 0.50574 * 13 12 11 16 16 C 1.48397 * 120.04136 * 179.72174 * 15 13 12 17 17 N 1.34072 * 126.67920 * 179.70971 * 16 15 13 18 18 N 1.28979 * 107.26661 * 179.89761 * 17 16 15 19 19 N 1.28727 * 108.95527 * 0.37224 * 18 17 16 20 20 H 0.97002 * 125.34470 * 179.78307 * 19 18 17 21 21 N 1.28878 * 109.31978 * 359.76724 * 19 18 17 22 22 C 1.39370 * 119.91530 * 359.74467 * 15 13 12 23 23 C 1.38039 * 119.94289 * 0.02562 * 22 15 13 24 24 F 1.35098 * 119.98463 * 179.97438 * 23 22 15 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.97281 * 0.02562 * 12 11 10 30 30 H 1.08004 * 120.02964 * 179.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7373 -4.9299 -0.0019 12 6 0.3713 -5.1828 0.0032 13 6 -0.0911 -6.4830 -0.0022 14 35 -1.9507 -6.8257 -0.0026 15 6 0.8137 -7.5441 -0.0019 16 6 0.3182 -8.9429 -0.0014 17 7 1.0643 -10.0568 -0.0066 18 7 0.2540 -11.0603 -0.0018 19 7 -0.9559 -10.6208 -0.0018 20 1 -1.7534 -11.1730 -0.0017 21 7 -0.9414 -9.3321 -0.0017 22 6 2.1839 -7.2892 -0.0017 23 6 2.6425 -5.9872 -0.0012 24 9 3.9705 -5.7392 -0.0005 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 3.1566 -3.4354 -0.0003 29 1 -0.3295 -4.3610 0.0070 30 1 2.8863 -8.1096 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581857778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = 109.630570 kcal Electronic energy + Delta-G solvation = -20302.249173 eV Core-core repulsion = 16710.396488 eV Total energy + Delta-G solvation = -3591.852685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.998 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.55877 -44.33792 -39.14449 -35.82927 -34.19002 -33.34516 -32.51788 -31.85455 -29.64458 -28.81672 -26.84983 -24.66077 -24.01372 -23.05464 -21.65114 -21.06773 -19.20774 -17.80279 -17.13022 -17.05784 -16.11120 -15.92890 -15.41379 -14.84905 -14.79467 -14.11761 -13.78853 -13.49589 -13.42565 -13.34137 -12.68149 -12.32206 -12.24556 -12.00868 -11.34200 -11.31761 -11.19611 -11.13012 -10.95483 -10.82073 -10.58127 -10.30389 -9.58352 -9.55960 -9.51035 -8.67475 -8.55446 -6.94893 -6.32605 -4.39409 0.84182 1.17802 1.30537 1.72097 2.31968 2.46875 3.18686 3.23837 3.25298 3.71582 3.73497 3.96737 4.21140 4.27826 4.52102 4.95503 5.05143 5.28367 5.39015 5.54600 5.60609 5.85332 6.04298 6.19400 6.35749 6.43043 6.64366 6.94571 7.18079 7.42655 7.74557 7.85144 8.22201 8.30259 8.68105 9.27672 10.77557 Molecular weight = 341.00amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.003505 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.667063 B = 7987.068149 C = 9393.589249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.244 3.756 10 N -0.703 5.703 11 C 0.235 3.765 12 C -0.160 4.160 13 C -0.008 4.008 14 Br -0.022 7.022 15 C -0.066 4.066 16 C 0.230 3.770 17 N -0.273 5.273 18 N -0.060 5.060 19 N -0.236 5.236 20 H 0.471 0.529 21 N -0.276 5.276 22 C -0.051 4.051 23 C 0.008 3.992 24 F -0.138 7.138 25 H 0.268 0.732 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.402 0.598 29 H 0.153 0.847 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -17.806 0.004 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.123 3.877 10 N -0.322 5.322 11 C 0.118 3.882 12 C -0.185 4.185 13 C -0.091 4.091 14 Br 0.064 6.936 15 C -0.074 4.074 16 C -0.049 4.049 17 N -0.147 5.147 18 N -0.055 5.055 19 N -0.082 5.082 20 H 0.324 0.676 21 N -0.128 5.128 22 C -0.073 4.073 23 C -0.017 4.017 24 F -0.117 7.117 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.237 0.763 29 H 0.171 0.829 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.176 -18.188 0.000 18.910 hybrid contribution 0.831 1.247 0.000 1.498 sum -4.346 -16.941 0.000 17.490 Atomic orbital electron populations 1.69923 1.06070 1.27771 1.48535 1.24910 0.94971 0.99519 0.94329 0.86428 0.79445 0.81977 0.78879 1.19953 1.20957 1.19958 1.21087 0.93441 0.90079 1.53794 0.91773 1.19362 0.88573 0.82332 0.97409 1.45769 1.10884 1.01939 1.73607 1.18112 0.92148 0.85895 0.92007 1.20465 0.93745 0.95493 1.08812 1.21453 0.90628 0.94240 1.02799 1.96688 1.04468 1.95288 1.97113 1.16291 0.91786 0.84742 1.14620 1.23417 0.85082 0.95150 1.01202 1.76038 1.25047 0.95170 1.18444 1.78804 0.88736 1.22774 1.15204 1.47977 1.09478 1.04460 1.46245 0.67568 1.75849 1.21763 0.93302 1.21843 1.20669 0.94297 0.95267 0.97091 1.16877 0.77364 0.92380 1.15107 1.91452 1.30428 1.94883 1.94910 0.92183 0.95234 0.95224 0.76303 0.82931 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 13.29 55.43 0.74 -23.47 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -13.94 9.28 -34.44 -0.32 -14.26 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.24 5.67 4.66 -5.19 -0.02 5.65 16 10 N -0.70 -13.74 5.72 -59.72 -0.34 -14.08 16 11 C 0.24 4.12 6.66 -83.66 -0.56 3.56 16 12 C -0.16 -2.70 9.03 -39.42 -0.36 -3.05 16 13 C -0.01 -0.12 6.25 -39.22 -0.24 -0.37 16 14 Br -0.02 -0.30 30.51 -68.01 -2.08 -2.38 16 15 C -0.07 -0.98 5.88 -104.84 -0.62 -1.60 16 16 C 0.23 3.26 7.84 -156.29 -1.23 2.04 16 17 N -0.27 -3.83 12.23 32.15 0.39 -3.44 16 18 N -0.06 -0.71 13.47 60.35 0.81 0.11 16 19 N -0.24 -2.20 7.90 60.35 0.48 -1.73 16 20 H 0.47 2.06 8.96 -340.36 -3.05 -0.99 16 21 N -0.28 -3.41 9.25 32.16 0.30 -3.11 16 22 C -0.05 -0.74 9.67 -39.23 -0.38 -1.12 16 23 C 0.01 0.12 7.30 -39.30 -0.29 -0.16 16 24 F -0.14 -2.21 16.62 2.25 0.04 -2.17 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.03 0.73 7.93 -51.93 -0.41 0.32 16 27 H 0.03 0.74 7.95 -51.93 -0.41 0.32 16 28 H 0.40 7.52 7.80 -40.82 -0.32 7.21 16 29 H 0.15 2.70 6.71 -52.48 -0.35 2.35 16 30 H 0.15 1.91 7.88 -52.48 -0.41 1.50 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -28.15 295.02 -8.84 -36.99 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.49 Total: 1.43 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.11 Total: -7.65 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 2.37 Total: -45.72 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.08 Total: -2.38 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.15 -8.84 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581857778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.620 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds