Wall clock time and date at job start Sat Apr 11 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.39720 * 119.99879 * 179.97438 * 10 9 7 12 12 C 1.38913 * 119.95864 * 359.72983 * 11 10 9 13 13 C 1.38004 * 120.06211 * 179.76344 * 12 11 10 14 14 Br 1.89099 * 120.01683 * 180.25592 * 13 12 11 15 15 C 1.39438 * 119.97022 * 0.50574 * 13 12 11 16 16 C 1.48397 * 120.04136 * 179.72174 * 15 13 12 17 17 N 1.34072 * 126.67920 * 179.70971 * 16 15 13 18 18 N 1.28979 * 107.26661 * 179.89761 * 17 16 15 19 19 N 1.28727 * 108.95527 * 0.37224 * 18 17 16 20 20 H 0.97002 * 125.34470 * 179.78307 * 19 18 17 21 21 N 1.28878 * 109.31978 * 359.76724 * 19 18 17 22 22 C 1.39370 * 119.91530 * 359.74467 * 15 13 12 23 23 C 1.38039 * 119.94289 * 0.02562 * 22 15 13 24 24 F 1.35098 * 119.98463 * 179.97438 * 23 22 15 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.97281 * 0.02562 * 12 11 10 30 30 H 1.08004 * 120.02964 * 179.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7373 -4.9299 -0.0019 12 6 0.3713 -5.1828 0.0032 13 6 -0.0911 -6.4830 -0.0022 14 35 -1.9507 -6.8257 -0.0026 15 6 0.8137 -7.5441 -0.0019 16 6 0.3182 -8.9429 -0.0014 17 7 1.0643 -10.0568 -0.0066 18 7 0.2540 -11.0603 -0.0018 19 7 -0.9559 -10.6208 -0.0018 20 1 -1.7534 -11.1730 -0.0017 21 7 -0.9414 -9.3321 -0.0017 22 6 2.1839 -7.2892 -0.0017 23 6 2.6425 -5.9872 -0.0012 24 9 3.9705 -5.7392 -0.0005 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 3.1566 -3.4354 -0.0003 29 1 -0.3295 -4.3610 0.0070 30 1 2.8863 -8.1096 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581857778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:23 Heat of formation + Delta-G solvation = 91.964199 kcal Electronic energy + Delta-G solvation = -20303.015244 eV Core-core repulsion = 16710.396488 eV Total energy + Delta-G solvation = -3592.618756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.998 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85306 -45.32671 -40.45650 -37.29441 -35.26087 -34.88334 -33.91821 -33.08403 -31.05482 -30.13415 -28.48132 -25.73318 -25.45672 -24.38743 -23.06713 -22.35782 -20.22225 -19.31946 -18.46197 -18.03268 -17.72227 -17.38434 -16.71658 -16.57318 -16.05869 -15.31393 -15.07285 -15.01444 -15.00221 -14.57947 -14.07322 -14.03876 -13.50871 -13.18740 -12.89552 -12.81921 -12.46921 -12.34086 -12.31901 -12.13386 -12.07473 -11.79249 -11.48802 -10.90244 -10.69032 -10.52365 -9.80747 -8.39546 -8.30680 -6.44039 -0.35679 -0.04732 0.27964 0.50719 1.30321 1.43752 1.45175 1.53297 1.54560 2.30750 2.46501 2.54484 2.68950 3.05431 3.07050 3.26926 3.75818 4.05254 4.18482 4.27417 4.51255 4.60310 4.82542 4.89252 4.97250 5.06893 5.25826 5.41500 5.58944 5.73486 5.84665 6.19564 6.60603 6.87834 7.22568 7.27670 8.80104 Molecular weight = 341.00amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.003505 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.667063 B = 7987.068149 C = 9393.589249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.265 3.735 10 N -0.713 5.713 11 C 0.216 3.784 12 C -0.164 4.164 13 C -0.014 4.014 14 Br -0.005 7.005 15 C -0.053 4.053 16 C 0.214 3.786 17 N -0.290 5.290 18 N -0.057 5.057 19 N -0.205 5.205 20 H 0.492 0.508 21 N -0.275 5.275 22 C -0.042 4.042 23 C 0.015 3.985 24 F -0.137 7.137 25 H 0.270 0.730 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.404 0.596 29 H 0.138 0.862 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -19.314 0.004 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.600 4.600 8 H 0.088 0.912 9 C 0.142 3.858 10 N -0.336 5.336 11 C 0.103 3.897 12 C -0.190 4.190 13 C -0.097 4.097 14 Br 0.081 6.919 15 C -0.061 4.061 16 C -0.066 4.066 17 N -0.162 5.162 18 N -0.052 5.052 19 N -0.056 5.056 20 H 0.350 0.650 21 N -0.128 5.128 22 C -0.064 4.064 23 C -0.010 4.010 24 F -0.116 7.116 25 H 0.079 0.921 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.240 0.760 29 H 0.155 0.845 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.923 -19.771 0.000 20.375 hybrid contribution 0.616 1.433 0.000 1.560 sum -4.307 -18.339 0.000 18.837 Atomic orbital electron populations 1.70041 1.07563 1.28619 1.49617 1.25795 0.95771 1.03034 0.93910 0.85388 0.78167 0.77665 0.79146 1.19250 1.20729 1.19258 1.21498 0.93998 0.91171 1.53293 0.91189 1.18825 0.88535 0.83164 0.95240 1.45344 1.10175 1.01913 1.76133 1.18232 0.92752 0.85396 0.93294 1.20372 0.93417 0.95844 1.09347 1.21533 0.91860 0.93754 1.02550 1.96689 1.02956 1.95170 1.97036 1.16434 0.91851 0.85312 1.12548 1.23250 0.85700 0.94835 1.02768 1.76031 1.25813 0.95280 1.19123 1.78767 0.89190 1.22122 1.15145 1.48017 1.09912 1.03813 1.43830 0.64961 1.75785 1.21142 0.94510 1.21333 1.20840 0.94572 0.95038 0.95984 1.16891 0.77137 0.92410 1.14557 1.91455 1.30327 1.94935 1.94876 0.92112 0.97496 0.97494 0.76006 0.84451 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 2 C 0.02 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.56 -29.24 9.28 25.60 0.24 -29.00 16 8 H 0.07 3.47 7.60 -2.91 -0.02 3.45 16 9 C 0.26 12.84 4.66 85.64 0.40 13.24 16 10 N -0.71 -28.72 5.72 -342.85 -1.96 -30.68 16 11 C 0.22 7.71 6.66 38.27 0.25 7.96 16 12 C -0.16 -5.67 9.03 22.38 0.20 -5.47 16 13 C -0.01 -0.41 6.25 22.50 0.14 -0.27 16 14 Br 0.00 -0.13 30.51 -20.37 -0.62 -0.75 16 15 C -0.05 -1.51 5.88 -20.01 -0.12 -1.63 16 16 C 0.21 5.59 7.84 137.35 1.08 6.67 16 17 N -0.29 -7.43 12.23 -52.20 -0.64 -8.06 16 18 N -0.06 -1.20 13.47 37.02 0.50 -0.70 16 19 N -0.21 -3.22 7.90 37.02 0.29 -2.92 16 20 H 0.49 2.66 8.96 -347.53 -3.12 -0.46 16 21 N -0.28 -6.10 9.25 -52.15 -0.48 -6.59 16 22 C -0.04 -1.16 9.67 22.50 0.22 -0.94 16 23 C 0.01 0.46 7.30 22.45 0.16 0.63 16 24 F -0.14 -4.27 16.62 44.97 0.75 -3.52 16 25 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.01 0.38 7.93 -2.39 -0.02 0.36 16 27 H 0.01 0.38 7.95 -2.39 -0.02 0.36 16 28 H 0.40 15.47 7.80 -92.71 -0.72 14.75 16 29 H 0.14 5.15 6.71 -2.91 -0.02 5.13 16 30 H 0.17 3.95 7.88 -2.91 -0.02 3.93 16 Total: -1.00 -59.86 295.02 0.59 -59.27 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -2.59 Total: 9.34 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 3.04 Total: -7.52 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -2.01 Total: -100.07 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.75 Total: -3.52 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.62 Total: -0.75 kcal Total: -59.86 0.59 -59.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581857778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.234 kcal (2) G-P(sol) polarization free energy of solvation -59.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds