Wall clock time and date at job start Sat Apr 11 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35603 * 125.67791 * 2 1 4 4 C 1.35501 * 108.85863 * 179.70020 * 3 2 1 5 5 Br 1.89098 * 126.07128 * 180.26518 * 4 3 2 6 6 C 1.39877 * 107.85207 * 0.26014 * 4 3 2 7 7 C 1.37646 * 125.67605 * 180.14613 * 2 1 3 8 8 C 1.46669 * 126.22749 * 0.02562 * 7 2 1 9 9 O 1.21697 * 119.99598 * 42.99975 * 8 7 2 10 10 N 1.34771 * 120.00102 * 222.99895 * 8 7 2 11 11 C 1.46966 * 120.59410 * 5.39393 * 10 8 7 12 12 C 1.53808 * 108.39944 * 124.75618 * 11 10 8 13 13 N 1.46970 * 108.57848 * 49.63728 * 12 11 10 14 14 C 1.36940 * 120.59215 * 124.62939 * 13 12 11 15 15 H 1.08001 * 119.99840 * 328.12822 * 14 13 12 16 16 C 1.38811 * 120.00092 * 148.13549 * 14 13 12 17 17 N 1.31626 * 119.99972 * 348.44256 * 16 14 13 18 18 Si 1.86793 * 120.00053 * 168.44983 * 16 14 13 19 19 H 1.48496 * 109.47440 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47054 * 119.99572 * 18 16 14 21 21 H 1.48502 * 109.47233 * 239.99323 * 18 16 14 22 22 C 1.46964 * 118.81347 * 304.64564 * 13 12 11 23 23 C 1.46970 * 120.59384 * 185.67176 * 10 8 7 24 24 H 1.08994 * 109.46768 * 94.93596 * 1 2 3 25 25 H 1.09003 * 109.46884 * 214.93460 * 1 2 3 26 26 H 1.08993 * 109.46945 * 334.93722 * 1 2 3 27 27 H 1.08001 * 125.56556 * 359.96075 * 3 2 1 28 28 H 1.08004 * 126.45000 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.61071 * 244.54192 * 11 10 8 30 30 H 1.08998 * 109.60645 * 5.05193 * 11 10 8 31 31 H 1.09009 * 109.74276 * 289.85402 * 12 11 10 32 32 H 1.09004 * 109.53985 * 169.30379 * 12 11 10 33 33 H 0.96996 * 120.00409 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.61075 * 295.48621 * 22 13 12 35 35 H 1.08998 * 109.75074 * 175.05330 * 22 13 12 36 36 H 1.08997 * 109.61156 * 354.94951 * 23 10 8 37 37 H 1.08999 * 109.61047 * 115.46253 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1015 0.0000 4 6 3.5529 0.7094 0.0067 5 35 5.0609 1.8504 0.0167 6 6 3.5782 -0.6891 0.0050 7 6 2.2678 -1.1181 -0.0029 8 6 1.8122 -2.5123 -0.0069 9 8 0.8908 -2.8491 -0.7270 10 7 2.4140 -3.4202 0.7867 11 6 3.4473 -3.0066 1.7465 12 6 3.0307 -3.4891 3.1463 13 7 2.6697 -4.9113 3.0632 14 6 3.2817 -5.8339 3.8690 15 1 4.3082 -5.6896 4.1722 16 6 2.5829 -6.9547 4.2961 17 7 1.2799 -7.0234 4.1227 18 14 3.4915 -8.3652 5.1171 19 1 4.9395 -8.0444 5.1920 20 1 2.9572 -8.5670 6.4879 21 1 3.3002 -9.6058 4.3236 22 6 1.6403 -5.3257 2.0995 23 6 2.0530 -4.8424 0.7036 24 1 -0.3632 -0.0884 -1.0238 25 1 -0.3633 -0.8425 0.5885 26 1 -0.3633 0.9309 0.4353 27 1 1.9086 2.1242 -0.0006 28 1 4.4584 -1.3150 0.0087 29 1 4.4023 -3.4544 1.4715 30 1 3.5355 -1.9202 1.7435 31 1 2.1726 -2.9136 3.4938 32 1 3.8634 -3.3629 3.8382 33 1 0.7915 -7.8064 4.4214 34 1 0.6834 -4.8809 2.3725 35 1 1.5520 -6.4121 2.0992 36 1 1.2202 -4.9687 0.0118 37 1 2.9109 -5.4179 0.3561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:07 Heat of formation + Delta-G solvation = 36.300461 kcal Electronic energy + Delta-G solvation = -22055.710263 eV Core-core repulsion = 18687.678395 eV Total energy + Delta-G solvation = -3368.031868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61152 -40.56376 -38.40929 -35.76734 -34.29779 -33.11906 -32.49726 -31.51482 -30.02012 -28.60116 -27.24326 -25.72308 -24.60417 -23.49741 -21.66860 -21.39639 -20.01521 -18.94808 -18.07589 -17.45359 -16.85278 -16.63261 -16.52623 -15.87515 -15.47561 -15.28494 -15.04838 -14.96588 -14.65215 -14.18753 -13.87950 -13.83486 -13.61688 -13.30727 -13.13723 -13.06944 -12.71092 -12.48630 -12.26771 -12.05528 -11.92896 -11.77322 -11.68229 -11.28490 -10.97678 -10.63408 -9.92444 -9.66716 -9.24583 -8.62805 -7.88640 -5.43194 0.45312 0.77539 1.36376 1.47974 1.49870 1.50844 1.60641 2.04264 2.23521 2.50787 3.27929 3.41704 3.58923 3.84509 3.99990 4.19987 4.23322 4.24442 4.30785 4.37530 4.50141 4.57409 4.61617 4.66115 4.74810 4.80704 4.87556 5.02146 5.20305 5.37809 5.46045 5.59985 5.64724 5.71244 6.04440 6.36388 6.37026 6.98794 7.09957 7.76637 8.31879 9.16578 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003164 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.618103 B = 8846.856697 C = 9917.489638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.410 5.410 3 C 0.069 3.931 4 C -0.192 4.192 5 Br -0.020 7.020 6 C -0.114 4.114 7 C -0.055 4.055 8 C 0.580 3.420 9 O -0.585 6.585 10 N -0.585 5.585 11 C 0.094 3.906 12 C 0.130 3.870 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.074 0.926 16 C -0.047 4.047 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.291 1.291 22 C 0.173 3.827 23 C 0.103 3.897 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.215 0.785 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.010 0.990 32 H 0.080 0.920 33 H 0.251 0.749 34 H -0.008 1.008 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 21.137 -9.161 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.083 5.083 3 C -0.071 4.071 4 C -0.277 4.277 5 Br 0.063 6.937 6 C -0.141 4.141 7 C -0.169 4.169 8 C 0.369 3.631 9 O -0.467 6.467 10 N -0.316 5.316 11 C -0.029 4.029 12 C 0.004 3.996 13 N -0.331 5.331 14 C -0.394 4.394 15 H 0.092 0.908 16 C -0.242 4.242 17 N -0.583 5.583 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.218 1.218 22 C 0.046 3.954 23 C -0.021 4.021 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.232 0.768 28 H 0.176 0.824 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.028 0.972 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.010 0.990 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.516 21.188 -9.443 23.632 hybrid contribution -0.403 -1.499 0.564 1.652 sum 4.113 19.688 -8.879 21.986 Atomic orbital electron populations 1.22365 0.74273 1.05772 1.04694 1.44125 1.07841 1.04418 1.51888 1.22403 0.88264 0.92867 1.03518 1.21026 0.92775 0.93750 1.20161 1.96607 1.36419 1.62279 1.98354 1.21342 0.94715 0.93854 1.04146 1.19875 0.91113 0.87106 1.18785 1.17383 0.81522 0.84509 0.79643 1.90758 1.30796 1.81452 1.43684 1.47893 1.39474 1.07606 1.36623 1.22705 0.90115 1.01504 0.88569 1.21519 0.98186 0.84766 0.95175 1.44213 1.45135 1.02444 1.41356 1.19593 0.94571 1.01515 1.23686 0.90802 1.25959 0.95689 1.02824 0.99757 1.70139 1.07101 1.29649 1.51453 0.85151 0.78674 0.78974 0.77285 1.18658 1.22085 1.21773 1.20861 0.89150 0.99518 0.85839 1.22240 1.00762 0.79818 0.99304 0.89524 0.91543 0.85242 0.76831 0.82424 0.90143 0.87181 0.97201 0.90162 0.93996 0.99032 0.90905 0.90281 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 10.51 127.77 1.34 2.57 16 2 N -0.41 -9.17 3.16 -534.21 -1.69 -10.86 16 3 C 0.07 1.21 11.34 83.48 0.95 2.15 16 4 C -0.19 -3.98 6.53 22.03 0.14 -3.84 16 5 Br -0.02 -0.37 34.08 -20.37 -0.69 -1.06 16 6 C -0.11 -2.78 8.45 22.58 0.19 -2.59 16 7 C -0.05 -1.56 5.93 40.35 0.24 -1.32 16 8 C 0.58 20.59 7.17 86.45 0.62 21.21 16 9 O -0.58 -24.00 16.01 -4.34 -0.07 -24.07 16 10 N -0.59 -21.20 2.94 -821.86 -2.42 -23.62 16 11 C 0.09 3.02 5.76 86.56 0.50 3.52 16 12 C 0.13 5.12 6.69 86.56 0.58 5.70 16 13 N -0.61 -29.73 2.96 -697.31 -2.06 -31.79 16 14 C -0.26 -13.92 9.57 84.03 0.80 -13.11 16 15 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 16 C -0.05 -2.54 5.03 84.86 0.43 -2.11 16 17 N -0.94 -54.61 11.11 21.65 0.24 -54.37 16 18 Si 0.97 43.59 29.57 68.60 2.03 45.62 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 C 0.17 8.44 5.46 86.42 0.47 8.91 16 23 C 0.10 4.14 6.60 86.42 0.57 4.71 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 26 H 0.13 1.18 8.12 -2.39 -0.02 1.16 16 27 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.16 3.60 7.48 -2.91 -0.02 3.58 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.11 3.01 4.81 -2.39 -0.01 3.00 16 31 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 33 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.07 3.95 6.09 -2.39 -0.01 3.94 16 36 H 0.08 3.22 6.99 -2.39 -0.02 3.20 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -68.03 324.44 3.26 -64.78 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.08 Total: 9.58 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.83 Total: 25.80 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.93 Total: -120.64 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.07 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.06 kcal Total: -68.03 3.26 -64.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.076 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds