Wall clock time and date at job start Sat Apr 11 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46989 * 2 1 4 4 C 1.46901 * 111.00197 * 300.99130 * 3 2 1 5 5 C 1.50703 * 109.46606 * 288.95855 * 4 3 2 6 6 H 1.08007 * 120.00088 * 4.98015 * 5 4 3 7 7 C 1.37871 * 120.00038 * 184.97509 * 5 4 3 8 8 N 1.31514 * 120.00344 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99965 * 0.02562 * 7 5 4 10 10 H 1.48510 * 109.47252 * 89.99809 * 9 7 5 11 11 H 1.48498 * 109.47542 * 209.99595 * 9 7 5 12 12 H 1.48500 * 109.47203 * 330.00326 * 9 7 5 13 13 C 1.46910 * 110.99738 * 64.94100 * 3 2 1 14 14 C 1.50694 * 109.46971 * 66.04335 * 13 3 2 15 15 O 1.21282 * 120.00398 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99903 * 179.97438 * 14 13 3 17 17 C 1.39433 * 120.00506 * 185.14117 * 16 14 13 18 18 C 1.39034 * 119.69116 * 174.86705 * 17 16 14 19 19 C 1.38358 * 119.11301 * 179.97438 * 18 17 16 20 20 C 1.38906 * 118.48677 * 0.02562 * 19 18 17 21 21 Br 1.89105 * 120.35644 * 179.97438 * 20 19 18 22 22 C 1.38160 * 119.29131 * 0.02562 * 20 19 18 23 23 N 1.31934 * 120.83560 * 0.02562 * 22 20 19 24 24 H 1.09004 * 109.46628 * 185.15744 * 1 2 3 25 25 H 1.08998 * 109.47321 * 305.15298 * 1 2 3 26 26 H 1.08996 * 109.47386 * 65.16271 * 1 2 3 27 27 H 1.08996 * 109.47421 * 240.00765 * 2 1 3 28 28 H 1.08999 * 109.47528 * 119.99969 * 2 1 3 29 29 H 1.08998 * 109.47113 * 48.95882 * 4 3 2 30 30 H 1.08999 * 109.47345 * 168.96447 * 4 3 2 31 31 H 0.97002 * 120.00060 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46730 * 306.04666 * 13 3 2 33 33 H 1.08997 * 109.46642 * 186.04787 * 13 3 2 34 34 H 0.97001 * 120.00184 * 5.14016 * 16 14 13 35 35 H 1.08001 * 120.44047 * 0.27605 * 18 17 16 36 36 H 1.07997 * 120.75433 * 180.02562 * 19 18 17 37 37 H 1.08007 * 119.58178 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5293 2.1168 -1.1756 5 6 2.2238 1.6051 -2.4113 6 1 2.8958 0.7622 -2.3433 7 6 2.0014 2.2128 -3.6287 8 7 2.6079 1.7666 -4.7070 9 14 0.8397 3.6709 -3.7464 10 1 1.6013 4.9287 -3.5380 11 1 0.2067 3.6924 -5.0895 12 1 -0.2122 3.5509 -2.7051 13 6 1.6474 2.0750 1.2424 14 6 2.3669 1.4402 2.4044 15 8 3.1165 0.5055 2.2162 16 7 2.1784 1.9119 3.6528 17 6 2.9235 1.3968 4.7128 18 6 2.8019 1.9602 5.9780 19 6 3.5465 1.4393 7.0213 20 6 4.3916 0.3679 6.7618 21 35 5.4340 -0.3848 8.1484 22 6 4.4633 -0.1413 5.4794 23 7 3.7414 0.3774 4.5045 24 1 -0.3633 -1.0236 0.0924 25 1 -0.3634 0.5917 0.8402 26 1 -0.3634 0.4316 -0.9326 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.4543 1.9668 -1.2746 30 1 1.7384 3.1798 -1.0553 31 1 2.4516 2.1944 -5.5635 32 1 0.5710 1.9948 1.3940 33 1 1.9271 3.1261 1.1721 34 1 1.5243 2.6099 3.8139 35 1 2.1314 2.7903 6.1452 36 1 3.4723 1.8562 8.0148 37 1 5.1192 -0.9741 5.2723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:15 Heat of formation + Delta-G solvation = 36.717192 kcal Electronic energy + Delta-G solvation = -21125.783982 eV Core-core repulsion = 17757.770184 eV Total energy + Delta-G solvation = -3368.013797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01331 -39.32366 -36.90248 -35.00899 -33.08879 -32.51515 -31.85930 -30.11916 -29.36378 -28.35440 -25.65044 -24.29927 -23.23681 -22.73785 -20.72663 -19.47011 -18.26745 -17.19161 -16.72412 -16.24211 -15.92532 -15.79024 -15.08634 -14.84878 -14.52783 -14.28984 -13.79937 -13.68323 -13.44404 -12.99514 -12.51913 -12.47791 -12.05697 -11.97865 -11.60171 -11.47419 -11.07308 -10.79493 -10.69610 -10.62660 -10.48772 -10.23191 -10.13593 -9.93458 -9.84108 -9.33335 -9.04095 -8.56493 -8.45590 -7.37171 -6.03911 -4.00893 0.60278 0.89460 1.28487 2.64714 2.73073 3.26042 3.33064 3.34174 3.53062 4.07897 4.40512 4.43603 4.52393 4.54491 4.77740 4.93371 5.22815 5.27473 5.40836 5.45313 5.50839 5.52350 5.76051 5.84347 5.91084 6.03091 6.31088 6.43618 6.45535 6.79757 6.90992 6.95563 7.03470 7.55979 7.74008 7.86348 7.97345 8.30797 8.65504 9.07541 9.56706 11.09468 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.002145 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.676749 B =13052.957951 C =13247.244227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 N -0.507 5.507 4 C 0.160 3.840 5 C -0.504 4.504 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.032 3.968 14 C 0.501 3.499 15 O -0.439 6.439 16 N -0.667 5.667 17 C 0.386 3.614 18 C -0.210 4.210 19 C -0.018 4.018 20 C -0.189 4.189 21 Br -0.043 7.043 22 C 0.173 3.827 23 N -0.467 5.467 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.074 0.926 29 H -0.001 1.001 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 0.378 29.649 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.230 5.230 4 C 0.034 3.966 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.100 4.100 14 C 0.286 3.714 15 O -0.303 6.303 16 N -0.314 5.314 17 C 0.154 3.846 18 C -0.234 4.234 19 C -0.045 4.045 20 C -0.272 4.272 21 Br 0.041 6.959 22 C 0.012 3.988 23 N -0.182 5.182 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.016 0.984 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.254 0.746 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.700 -0.895 28.746 28.769 hybrid contribution -2.152 1.874 0.501 2.897 sum -1.452 0.979 29.247 29.300 Atomic orbital electron populations 1.22429 0.99774 1.01087 1.01585 1.22179 0.91359 0.90447 1.03464 1.61968 1.59354 1.02149 0.99541 1.20284 0.94261 0.93419 0.88624 1.20990 1.26784 1.17051 0.89449 0.90020 1.24890 0.95779 0.96989 0.95705 1.69892 1.43144 1.41591 0.99226 0.86890 0.81723 0.83720 0.77530 1.20197 1.21226 1.19376 1.22032 0.97626 0.99678 0.90633 1.21325 0.83147 0.84206 0.82714 1.90791 1.32408 1.24287 1.82863 1.44018 1.40184 1.40735 1.06490 1.18723 0.89537 0.89726 0.86644 1.21502 1.05583 1.04524 0.91812 1.21275 0.91460 0.92224 0.99554 1.22797 1.05361 1.03667 0.95408 1.96713 1.69056 1.83372 1.46768 1.22820 0.93688 0.96506 0.85766 1.67939 1.07184 1.09965 1.33083 0.92961 0.94091 0.91529 0.89550 0.90786 0.98395 0.96025 0.92669 0.92230 0.88142 0.74641 0.83795 0.83686 0.81607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.22 37.16 0.34 -2.89 16 2 C 0.05 1.06 5.55 -3.82 -0.02 1.04 16 3 N -0.51 -10.55 4.40 -237.51 -1.05 -11.60 16 4 C 0.16 3.73 3.61 -4.97 -0.02 3.71 16 5 C -0.50 -14.26 9.23 -34.44 -0.32 -14.58 16 6 H 0.08 2.57 7.51 -52.48 -0.39 2.17 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 9 Si 0.87 21.00 27.37 -169.99 -4.65 16.34 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.10 6.69 56.52 0.38 -5.72 16 13 C 0.03 0.50 5.28 -4.97 -0.03 0.47 16 14 C 0.50 7.73 7.47 -10.99 -0.08 7.65 16 15 O -0.44 -8.66 12.61 5.56 0.07 -8.59 16 16 N -0.67 -7.40 5.39 -11.42 -0.06 -7.46 16 17 C 0.39 4.58 7.42 -154.68 -1.15 3.43 16 18 C -0.21 -1.72 9.94 -39.24 -0.39 -2.11 16 19 C -0.02 -0.14 9.93 -39.29 -0.39 -0.53 16 20 C -0.19 -1.80 6.25 -39.36 -0.25 -2.05 16 21 Br -0.04 -0.36 33.73 -68.01 -2.29 -2.65 16 22 C 0.17 2.01 10.93 -17.54 -0.19 1.82 16 23 N -0.47 -6.75 7.89 -12.34 -0.10 -6.85 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.61 6.18 -51.93 -0.32 0.29 16 26 H 0.07 1.25 6.44 -51.93 -0.33 0.91 16 27 H 0.09 1.93 7.14 -51.93 -0.37 1.56 16 28 H 0.07 1.46 5.81 -51.93 -0.30 1.16 16 29 H 0.00 -0.03 5.26 -51.93 -0.27 -0.31 16 30 H 0.02 0.50 6.98 -51.93 -0.36 0.13 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.06 0.80 6.08 -51.93 -0.32 0.48 16 33 H 0.10 1.39 7.87 -51.93 -0.41 0.98 16 34 H 0.42 2.78 8.70 -40.82 -0.36 2.42 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -34.64 325.15 -9.28 -43.92 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.29 Total: 0.96 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.59 Total: -2.18 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.43 Total: -52.71 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.65 Total: 16.34 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.64 -9.28 -43.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.635 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds