Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46770 * 2 1 4 4 C 1.36935 * 120.00158 * 280.06822 * 3 2 1 5 5 H 1.08002 * 120.00455 * 304.78365 * 4 3 2 6 6 C 1.38816 * 119.99789 * 124.78235 * 4 3 2 7 7 N 1.31616 * 119.99912 * 159.16953 * 6 4 3 8 8 Si 1.86800 * 120.00077 * 339.16374 * 6 4 3 9 9 H 1.48500 * 109.46982 * 92.71935 * 8 6 4 10 10 H 1.48498 * 109.46803 * 212.72193 * 8 6 4 11 11 H 1.48497 * 109.46882 * 332.71960 * 8 6 4 12 12 S 1.65601 * 119.99796 * 100.34589 * 3 2 1 13 13 O 1.42095 * 106.40228 * 198.75630 * 12 3 2 14 14 O 1.42105 * 106.40095 * 331.67260 * 12 3 2 15 15 C 1.76201 * 107.21821 * 85.21393 * 12 3 2 16 16 C 1.38269 * 119.97445 * 346.14936 * 15 12 3 17 17 C 1.38169 * 120.02348 * 179.76749 * 16 15 12 18 18 C 1.38489 * 119.97427 * 0.50600 * 17 16 15 19 19 F 1.35099 * 120.02251 * 179.76870 * 18 17 16 20 20 C 1.38437 * 119.94923 * 359.74860 * 18 17 16 21 21 C 1.38220 * 119.97088 * 359.97438 * 20 18 17 22 22 C 1.50702 * 119.98380 * 179.97438 * 21 20 18 23 23 F 1.39898 * 109.47233 * 354.17970 * 22 21 20 24 24 F 1.39901 * 109.47321 * 114.17818 * 22 21 20 25 25 F 1.39896 * 109.47062 * 234.18026 * 22 21 20 26 26 H 1.09000 * 109.47085 * 54.81708 * 1 2 3 27 27 H 1.09004 * 109.46724 * 174.81668 * 1 2 3 28 28 H 1.08992 * 109.46908 * 294.81264 * 1 2 3 29 29 H 1.09000 * 109.46901 * 240.00479 * 2 1 3 30 30 H 1.08997 * 109.47369 * 120.00223 * 2 1 3 31 31 H 0.97002 * 120.00005 * 179.97438 * 7 6 4 32 32 H 1.08002 * 119.98665 * 0.02562 * 16 15 12 33 33 H 1.07998 * 120.01508 * 180.23196 * 17 16 15 34 34 H 1.07995 * 120.01387 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0510 2.0959 -1.1676 5 1 2.5790 1.7056 -2.0251 6 6 1.4055 3.3221 -1.2491 7 7 1.7530 4.1884 -2.1771 8 14 0.0434 3.7427 -0.0420 9 1 0.6179 4.4677 1.1197 10 1 -0.9646 4.6023 -0.7129 11 1 -0.6060 2.4922 0.4269 12 16 2.5371 2.0760 1.4109 13 8 2.5195 3.4806 1.1966 14 8 1.8180 1.4407 2.4591 15 6 4.2274 1.6261 1.6231 16 6 4.7740 0.6129 0.8573 17 6 6.1006 0.2625 1.0195 18 6 6.8801 0.9195 1.9568 19 9 8.1762 0.5745 2.1195 20 6 6.3304 1.9302 2.7267 21 6 5.0045 2.2828 2.5586 22 6 4.4056 3.3827 3.3969 23 9 5.3370 3.7992 4.3542 24 9 4.0663 4.4631 2.5755 25 9 3.2577 2.9068 4.0394 26 1 -0.3633 0.5921 -0.8399 27 1 -0.3633 -1.0235 -0.0928 28 1 -0.3633 0.4312 0.9327 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.3017 5.0451 -2.2343 32 1 4.1648 0.0980 0.1291 33 1 6.5284 -0.5264 0.4186 34 1 6.9374 2.4435 3.4577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103157187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = -213.287715 kcal Electronic energy + Delta-G solvation = -29945.701967 eV Core-core repulsion = 25085.708739 eV Total energy + Delta-G solvation = -4859.993228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.96529 -49.13234 -47.55535 -47.24169 -39.05352 -36.26055 -35.96784 -34.61890 -32.57674 -32.13710 -30.83937 -29.55728 -26.16342 -24.80944 -23.25019 -22.27171 -21.69392 -19.16398 -18.98148 -18.33302 -18.17479 -17.93852 -16.60819 -16.33996 -16.21680 -15.86071 -15.76457 -15.26454 -14.63067 -14.48679 -14.22094 -14.09249 -13.82732 -13.65325 -13.52251 -13.46324 -13.44157 -13.30125 -13.25837 -12.84615 -12.52517 -12.46025 -12.08700 -11.52325 -11.50674 -11.38282 -11.24931 -10.80619 -10.65005 -10.45087 -10.11914 -10.05273 -9.59845 -9.41679 -9.06527 -8.85914 -8.12613 -6.76730 -4.47799 0.60148 0.91107 1.40215 2.70421 3.15865 3.23506 3.33347 3.48095 3.67700 3.88219 4.02015 4.19039 4.23844 4.57523 4.58427 4.69451 4.74118 4.79433 5.14145 5.40577 5.50638 5.60689 5.72598 5.75613 5.91046 5.93591 5.99338 6.02839 6.26089 6.50957 6.59544 6.84828 6.97226 7.48684 7.92767 8.71272 8.86252 10.23474 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.006481 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.828287 B = 4319.112464 C = 5011.552210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 N -0.826 5.826 4 C -0.249 4.249 5 H 0.099 0.901 6 C 0.099 3.901 7 N -0.799 5.799 8 Si 0.839 3.161 9 H -0.229 1.229 10 H -0.282 1.282 11 H -0.245 1.245 12 S 2.469 3.531 13 O -0.937 6.937 14 O -0.984 6.984 15 C -0.604 4.604 16 C -0.006 4.006 17 C -0.141 4.141 18 C 0.123 3.877 19 F -0.132 7.132 20 C -0.129 4.129 21 C -0.078 4.078 22 C 0.480 3.520 23 F -0.177 7.177 24 F -0.137 7.137 25 F -0.165 7.165 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.287 0.713 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -7.053 4.195 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.002 3.998 3 N -0.652 5.652 4 C -0.402 4.402 5 H 0.117 0.883 6 C -0.121 4.121 7 N -0.434 5.434 8 Si 0.662 3.338 9 H -0.153 1.153 10 H -0.208 1.208 11 H -0.169 1.169 12 S 2.571 3.429 13 O -0.925 6.925 14 O -0.973 6.973 15 C -0.678 4.678 16 C -0.025 4.025 17 C -0.160 4.160 18 C 0.103 3.897 19 F -0.110 7.110 20 C -0.149 4.149 21 C -0.081 4.081 22 C 0.425 3.575 23 F -0.159 7.159 24 F -0.118 7.118 25 F -0.146 7.146 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.422 -6.452 5.096 9.848 hybrid contribution 0.483 0.371 0.621 0.869 sum 5.904 -6.082 5.716 10.224 Atomic orbital electron populations 1.22209 0.96305 1.00933 1.03034 1.21243 0.94759 0.82864 1.00979 1.53213 1.66291 1.21463 1.24194 1.18988 1.30502 1.01880 0.88866 0.88315 1.25885 0.96178 0.94853 0.95229 1.69774 1.35997 1.06172 1.31445 0.87436 0.80921 0.81603 0.83818 1.15305 1.20813 1.16875 1.14195 0.74559 0.77324 0.76824 1.93559 1.84999 1.29361 1.84627 1.93416 1.69592 1.76530 1.57785 1.32411 1.31568 1.03201 1.00602 1.20786 0.94026 0.92626 0.95059 1.21484 0.94812 1.01262 0.98435 1.17523 0.78809 0.96049 0.97286 1.91526 1.33742 1.91138 1.94639 1.20928 0.94719 0.98109 1.01117 1.19334 0.94850 0.96351 0.97527 1.18646 0.76744 0.83175 0.78922 1.93142 1.65686 1.91248 1.65814 1.93453 1.91903 1.55635 1.70760 1.93321 1.50609 1.88050 1.82643 0.91355 0.92643 0.92493 0.91277 0.91887 0.90265 0.82797 0.83372 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.12 37.16 0.34 -2.47 16 2 C 0.13 2.20 5.17 -4.04 -0.02 2.18 16 3 N -0.83 -17.74 1.28 -59.91 -0.08 -17.81 16 4 C -0.25 -5.86 9.45 -15.06 -0.14 -6.00 16 5 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.10 2.53 4.64 -17.43 -0.08 2.45 16 7 N -0.80 -20.95 13.97 55.49 0.78 -20.17 16 8 Si 0.84 20.51 25.09 -169.99 -4.27 16.24 16 9 H -0.23 -6.06 6.04 56.52 0.34 -5.72 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.25 -5.64 5.26 56.52 0.30 -5.34 16 12 S 2.47 58.20 2.97 -107.50 -0.32 57.88 16 13 O -0.94 -24.79 9.37 -57.17 -0.54 -25.32 16 14 O -0.98 -24.31 15.73 -57.17 -0.90 -25.21 16 15 C -0.60 -12.13 5.79 -39.58 -0.23 -12.36 16 16 C -0.01 -0.10 9.56 -39.60 -0.38 -0.48 16 17 C -0.14 -1.93 10.03 -39.51 -0.40 -2.33 16 18 C 0.12 1.78 7.30 -39.42 -0.29 1.49 16 19 F -0.13 -1.76 17.27 2.25 0.04 -1.72 16 20 C -0.13 -2.04 9.41 -39.51 -0.37 -2.41 16 21 C -0.08 -1.50 5.38 -104.63 -0.56 -2.06 16 22 C 0.48 9.63 2.81 36.01 0.10 9.73 16 23 F -0.18 -3.01 15.99 2.25 0.04 -2.97 16 24 F -0.14 -3.05 14.34 2.25 0.03 -3.02 16 25 F -0.16 -3.57 14.78 2.25 0.03 -3.53 16 26 H 0.07 1.21 7.80 -51.93 -0.40 0.80 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.07 7.49 -51.93 -0.39 0.68 16 29 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.06 0.99 7.56 -51.93 -0.39 0.59 16 31 H 0.29 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.15 2.18 6.50 -52.49 -0.34 1.83 16 33 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.15 1.99 7.17 -52.49 -0.38 1.62 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -28.97 305.06 -5.51 -34.48 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.89 Total: -1.17 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.03 Total: -12.27 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.70 Total: -37.98 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -1.43 Total: -50.53 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 0.14 Total: -11.24 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.27 Total: 16.24 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.32 Total: 57.88 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.97 -5.51 -34.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103157187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.810 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds