Wall clock time and date at job start Sat Apr 11 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46770 * 2 1 4 4 C 1.36935 * 120.00158 * 280.06822 * 3 2 1 5 5 H 1.08002 * 120.00455 * 304.78365 * 4 3 2 6 6 C 1.38816 * 119.99789 * 124.78235 * 4 3 2 7 7 N 1.31616 * 119.99912 * 159.16953 * 6 4 3 8 8 Si 1.86800 * 120.00077 * 339.16374 * 6 4 3 9 9 H 1.48500 * 109.46982 * 92.71935 * 8 6 4 10 10 H 1.48498 * 109.46803 * 212.72193 * 8 6 4 11 11 H 1.48497 * 109.46882 * 332.71960 * 8 6 4 12 12 S 1.65601 * 119.99796 * 100.34589 * 3 2 1 13 13 O 1.42095 * 106.40228 * 198.75630 * 12 3 2 14 14 O 1.42105 * 106.40095 * 331.67260 * 12 3 2 15 15 C 1.76201 * 107.21821 * 85.21393 * 12 3 2 16 16 C 1.38269 * 119.97445 * 346.14936 * 15 12 3 17 17 C 1.38169 * 120.02348 * 179.76749 * 16 15 12 18 18 C 1.38489 * 119.97427 * 0.50600 * 17 16 15 19 19 F 1.35099 * 120.02251 * 179.76870 * 18 17 16 20 20 C 1.38437 * 119.94923 * 359.74860 * 18 17 16 21 21 C 1.38220 * 119.97088 * 359.97438 * 20 18 17 22 22 C 1.50702 * 119.98380 * 179.97438 * 21 20 18 23 23 F 1.39898 * 109.47233 * 354.17970 * 22 21 20 24 24 F 1.39901 * 109.47321 * 114.17818 * 22 21 20 25 25 F 1.39896 * 109.47062 * 234.18026 * 22 21 20 26 26 H 1.09000 * 109.47085 * 54.81708 * 1 2 3 27 27 H 1.09004 * 109.46724 * 174.81668 * 1 2 3 28 28 H 1.08992 * 109.46908 * 294.81264 * 1 2 3 29 29 H 1.09000 * 109.46901 * 240.00479 * 2 1 3 30 30 H 1.08997 * 109.47369 * 120.00223 * 2 1 3 31 31 H 0.97002 * 120.00005 * 179.97438 * 7 6 4 32 32 H 1.08002 * 119.98665 * 0.02562 * 16 15 12 33 33 H 1.07998 * 120.01508 * 180.23196 * 17 16 15 34 34 H 1.07995 * 120.01387 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0510 2.0959 -1.1676 5 1 2.5790 1.7056 -2.0251 6 6 1.4055 3.3221 -1.2491 7 7 1.7530 4.1884 -2.1771 8 14 0.0434 3.7427 -0.0420 9 1 0.6179 4.4677 1.1197 10 1 -0.9646 4.6023 -0.7129 11 1 -0.6060 2.4922 0.4269 12 16 2.5371 2.0760 1.4109 13 8 2.5195 3.4806 1.1966 14 8 1.8180 1.4407 2.4591 15 6 4.2274 1.6261 1.6231 16 6 4.7740 0.6129 0.8573 17 6 6.1006 0.2625 1.0195 18 6 6.8801 0.9195 1.9568 19 9 8.1762 0.5745 2.1195 20 6 6.3304 1.9302 2.7267 21 6 5.0045 2.2828 2.5586 22 6 4.4056 3.3827 3.3969 23 9 5.3370 3.7992 4.3542 24 9 4.0663 4.4631 2.5755 25 9 3.2577 2.9068 4.0394 26 1 -0.3633 0.5921 -0.8399 27 1 -0.3633 -1.0235 -0.0928 28 1 -0.3633 0.4312 0.9327 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.3017 5.0451 -2.2343 32 1 4.1648 0.0980 0.1291 33 1 6.5284 -0.5264 0.4186 34 1 6.9374 2.4435 3.4577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103157187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:17 Heat of formation + Delta-G solvation = -231.395788 kcal Electronic energy + Delta-G solvation = -29946.487192 eV Core-core repulsion = 25085.708739 eV Total energy + Delta-G solvation = -4860.778453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.53687 -50.24182 -49.09514 -48.88381 -40.33915 -37.91018 -37.86267 -36.53206 -34.38519 -33.43253 -32.14681 -31.07627 -27.59306 -26.53515 -24.55681 -23.66582 -23.18294 -20.94927 -20.45858 -19.86583 -19.77498 -19.49162 -18.18441 -17.83287 -17.53817 -17.31980 -17.05165 -16.90225 -16.31972 -15.99764 -15.85604 -15.62002 -15.39244 -15.22722 -15.22459 -15.07738 -14.94556 -14.71232 -14.64901 -14.35785 -13.90618 -13.86162 -13.70162 -13.39502 -13.20176 -13.01206 -12.72727 -12.52819 -12.26425 -12.21257 -11.89541 -11.58469 -11.39818 -10.80960 -10.64654 -10.34439 -9.83655 -8.68591 -6.35169 -0.73453 -0.36787 -0.32232 1.21413 1.26588 1.36712 1.49770 1.89967 2.17444 2.21251 2.32997 2.55832 2.81737 2.88750 2.96637 3.00000 3.44986 3.66060 3.83563 3.95953 4.15852 4.24721 4.33211 4.54842 4.58637 4.67856 4.72516 4.76416 4.92395 5.13726 5.38481 5.42268 5.54987 5.80866 6.08202 6.85579 7.09719 8.35543 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.006481 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.828287 B = 4319.112464 C = 5011.552210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.832 5.832 4 C -0.247 4.247 5 H 0.105 0.895 6 C 0.077 3.923 7 N -0.836 5.836 8 Si 0.843 3.157 9 H -0.267 1.267 10 H -0.271 1.271 11 H -0.228 1.228 12 S 2.487 3.513 13 O -0.975 6.975 14 O -1.005 7.005 15 C -0.638 4.638 16 C -0.007 4.007 17 C -0.120 4.120 18 C 0.136 3.864 19 F -0.119 7.119 20 C -0.126 4.126 21 C -0.100 4.100 22 C 0.473 3.527 23 F -0.160 7.160 24 F -0.157 7.157 25 F -0.180 7.180 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.029 0.971 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.286 0.714 32 H 0.176 0.824 33 H 0.197 0.803 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.828 -10.105 3.988 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.659 5.659 4 C -0.397 4.397 5 H 0.122 0.878 6 C -0.140 4.140 7 N -0.473 5.473 8 Si 0.667 3.333 9 H -0.193 1.193 10 H -0.197 1.197 11 H -0.151 1.151 12 S 2.591 3.409 13 O -0.964 6.964 14 O -0.994 6.994 15 C -0.718 4.718 16 C -0.025 4.025 17 C -0.139 4.139 18 C 0.117 3.883 19 F -0.097 7.097 20 C -0.145 4.145 21 C -0.102 4.102 22 C 0.418 3.582 23 F -0.141 7.141 24 F -0.138 7.138 25 F -0.162 7.162 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.048 0.952 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.193 0.807 33 H 0.214 0.786 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.504 -9.507 4.831 13.040 hybrid contribution 0.045 1.166 0.896 1.471 sum 7.549 -8.341 5.727 12.624 Atomic orbital electron populations 1.22255 0.96372 1.03166 1.01034 1.21678 0.94909 0.80765 1.03679 1.53141 1.67271 1.22998 1.22509 1.18930 1.29947 1.01395 0.89456 0.87784 1.26173 0.96880 0.95728 0.95216 1.69792 1.37584 1.06812 1.33065 0.87349 0.81350 0.82059 0.82501 1.19286 1.19739 1.15078 1.12324 0.75450 0.76347 0.76738 1.93529 1.86146 1.31573 1.85132 1.93394 1.71010 1.76669 1.58343 1.31785 1.29724 1.06472 1.03797 1.21123 0.95540 0.91402 0.94469 1.21927 0.93301 1.01130 0.97515 1.17571 0.79230 0.95047 0.96501 1.91575 1.32840 1.90813 1.94448 1.21149 0.93407 0.98374 1.01569 1.19314 0.96288 0.96587 0.98033 1.18933 0.76691 0.83295 0.79289 1.93163 1.64718 1.91132 1.65102 1.93407 1.92179 1.56752 1.71451 1.93282 1.51757 1.88179 1.82941 0.92535 0.88431 0.95172 0.87389 0.90214 0.90338 0.80675 0.78603 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 9.12 71.98 0.66 -4.74 16 2 C 0.11 3.61 5.17 86.38 0.45 4.06 16 3 N -0.83 -34.76 1.28 -343.45 -0.44 -35.20 16 4 C -0.25 -11.50 9.45 84.03 0.79 -10.71 16 5 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 6 C 0.08 3.99 4.64 84.86 0.39 4.38 16 7 N -0.84 -44.92 13.97 21.65 0.30 -44.62 16 8 Si 0.84 42.44 25.09 68.60 1.72 44.17 16 9 H -0.27 -15.02 6.04 99.48 0.60 -14.42 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.23 -10.65 5.26 99.48 0.52 -10.13 16 12 S 2.49 117.24 2.97 -56.49 -0.17 117.07 16 13 O -0.97 -53.24 9.37 -128.00 -1.20 -54.44 16 14 O -1.00 -49.92 15.73 -128.00 -2.01 -51.93 16 15 C -0.64 -24.62 5.79 22.27 0.13 -24.49 16 16 C -0.01 -0.20 9.56 22.26 0.21 0.01 16 17 C -0.12 -2.65 10.03 22.31 0.22 -2.42 16 18 C 0.14 3.30 7.30 22.38 0.16 3.46 16 19 F -0.12 -2.54 17.27 44.97 0.78 -1.76 16 20 C -0.13 -3.58 9.41 22.31 0.21 -3.37 16 21 C -0.10 -3.69 5.38 -19.87 -0.11 -3.79 16 22 C 0.47 19.08 2.81 71.24 0.20 19.28 16 23 F -0.16 -5.31 15.99 44.97 0.72 -4.59 16 24 F -0.16 -7.25 14.34 44.97 0.64 -6.60 16 25 F -0.18 -7.98 14.78 44.97 0.66 -7.32 16 26 H 0.06 1.92 7.80 -2.39 -0.02 1.90 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.03 1.09 7.49 -2.39 -0.02 1.08 16 29 H 0.11 2.59 8.12 -2.39 -0.02 2.58 16 30 H 0.08 2.25 7.56 -2.39 -0.02 2.23 16 31 H 0.29 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.18 4.19 6.50 -2.91 -0.02 4.17 16 33 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.17 4.01 7.17 -2.91 -0.02 3.99 16 Total: -1.00 -66.35 305.06 5.21 -61.14 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 0.88 Total: 2.44 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.32 Total: -18.34 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.14 Total: -79.82 kcal Atomic # 8 Polarization: -103.16 SS G_CDS: -3.21 Total: -106.38 kcal Atomic # 9 Polarization: -23.08 SS G_CDS: 2.81 Total: -20.28 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.72 Total: 44.17 kcal Atomic # 16 Polarization: 117.24 SS G_CDS: -0.17 Total: 117.07 kcal Total: -66.35 5.21 -61.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103157187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.256 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds