Wall clock time and date at job start Sat Apr 11 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46619 * 2 1 4 4 C 1.50695 * 109.47013 * 240.00436 * 2 1 3 5 5 H 1.07999 * 120.00069 * 239.99797 * 4 2 1 6 6 C 1.37884 * 120.00286 * 60.00096 * 4 2 1 7 7 N 1.31510 * 119.99861 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46701 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47382 * 299.99711 * 8 6 4 11 11 H 1.48497 * 109.47225 * 59.99929 * 8 6 4 12 12 N 1.46898 * 109.46923 * 120.00190 * 2 1 3 13 13 C 1.46896 * 110.99617 * 176.04843 * 12 2 1 14 14 C 1.46900 * 111.00303 * 300.00071 * 12 2 1 15 15 C 1.50694 * 109.47114 * 170.00086 * 14 12 2 16 16 O 1.21277 * 120.00040 * 0.02562 * 15 14 12 17 17 N 1.34778 * 119.99886 * 179.97438 * 15 14 12 18 18 C 1.39440 * 119.99819 * 174.91791 * 17 15 14 19 19 C 1.39036 * 119.68293 * 185.07039 * 18 17 15 20 20 C 1.38358 * 119.11023 * 179.97438 * 19 18 17 21 21 C 1.38907 * 118.48555 * 0.02562 * 20 19 18 22 22 Br 1.89102 * 120.35195 * 179.97438 * 21 20 19 23 23 C 1.38152 * 119.29311 * 359.97438 * 21 20 19 24 24 N 1.31937 * 120.83436 * 359.73225 * 23 21 20 25 25 H 1.08998 * 109.47164 * 60.00164 * 1 2 3 26 26 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47193 * 299.99831 * 1 2 3 28 28 H 0.96999 * 120.00126 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47375 * 60.00232 * 13 12 2 30 30 H 1.09003 * 109.47279 * 180.02562 * 13 12 2 31 31 H 1.09001 * 109.47504 * 299.99900 * 13 12 2 32 32 H 1.09000 * 109.47172 * 290.00549 * 14 12 2 33 33 H 1.08999 * 109.46786 * 50.00141 * 14 12 2 34 34 H 0.96999 * 120.00203 * 354.91766 * 17 15 14 35 35 H 1.07995 * 120.44757 * 359.97438 * 19 18 17 36 36 H 1.08007 * 120.75508 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.58132 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4196 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8580 -0.8913 3.6158 16 8 2.4162 -1.9573 3.4645 17 7 1.5151 -0.4797 4.8525 18 6 1.7045 -1.3241 5.9459 19 6 1.2522 -0.9360 7.2020 20 6 1.4459 -1.7833 8.2785 21 6 2.0889 -2.9951 8.0605 22 35 2.3820 -4.1929 9.4942 23 6 2.5121 -3.3159 6.7851 24 7 2.3079 -2.4897 5.7770 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1611 -3.4844 29 1 3.9186 0.2052 1.1592 30 1 3.8209 -1.3117 2.0858 31 1 3.8030 -1.3531 0.3066 32 1 2.0518 0.9345 2.5281 33 1 0.4722 0.1322 2.3564 34 1 1.1365 0.4040 4.9820 35 1 0.7563 0.0140 7.3357 36 1 1.1049 -1.5087 9.2659 37 1 3.0129 -4.2567 6.6104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104688797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:25 Heat of formation + Delta-G solvation = 14.371312 kcal Electronic energy + Delta-G solvation = -21117.409524 eV Core-core repulsion = 17748.426736 eV Total energy + Delta-G solvation = -3368.982788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90435 -40.35549 -38.24377 -36.07359 -34.73552 -33.85464 -32.61117 -31.23040 -30.41356 -29.07413 -26.89500 -25.50668 -25.00049 -23.83254 -21.94152 -21.04734 -19.23176 -18.58779 -18.09252 -17.23288 -16.91999 -16.64699 -16.49281 -15.86286 -15.76874 -15.30938 -15.23073 -14.97777 -14.41411 -14.14719 -14.00945 -13.44835 -13.17672 -12.95803 -12.86284 -12.78393 -12.63228 -12.41012 -12.10399 -11.98890 -11.91860 -11.50444 -11.34978 -11.05186 -10.90694 -10.81658 -10.50726 -10.10177 -9.27712 -8.93639 -8.11917 -6.21989 -0.19245 0.19807 0.56162 1.42426 1.44002 1.51465 1.61959 1.76079 2.43111 2.71781 3.16044 3.22043 3.43685 3.76068 3.80442 3.87307 4.04745 4.30895 4.40221 4.58388 4.58547 4.68339 4.69980 4.87400 4.91880 5.02554 5.06805 5.14450 5.25561 5.49467 5.61746 5.71731 5.76973 6.10759 6.27083 6.34534 6.66748 6.89545 6.92685 7.29740 7.46462 8.93720 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.002080 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.786895 B =13456.480494 C =13963.665051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.218 3.782 3 H -0.023 1.023 4 C -0.523 4.523 5 H 0.052 0.948 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.276 1.276 12 N -0.537 5.537 13 C 0.045 3.955 14 C 0.035 3.965 15 C 0.507 3.493 16 O -0.492 6.492 17 N -0.649 5.649 18 C 0.357 3.643 19 C -0.186 4.186 20 C -0.016 4.016 21 C -0.185 4.185 22 Br -0.031 7.031 23 C 0.150 3.850 24 N -0.515 5.515 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.011 0.989 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.438 0.562 35 H 0.186 0.814 36 H 0.180 0.820 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -1.823 28.961 29.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.112 3.888 3 H -0.006 1.006 4 C -0.561 4.561 5 H 0.070 0.930 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.202 1.202 12 N -0.262 5.262 13 C -0.103 4.103 14 C -0.096 4.096 15 C 0.293 3.707 16 O -0.362 6.362 17 N -0.299 5.299 18 C 0.125 3.875 19 C -0.209 4.209 20 C -0.043 4.043 21 C -0.268 4.268 22 Br 0.053 6.947 23 C -0.010 4.010 24 N -0.231 5.231 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.279 0.721 35 H 0.204 0.796 36 H 0.197 0.803 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.355 -3.573 28.236 28.464 hybrid contribution 0.214 1.163 -0.709 1.379 sum -0.142 -2.410 27.527 27.633 Atomic orbital electron populations 1.21709 0.96767 0.99252 1.00489 1.19100 0.92964 0.90472 0.86244 1.00594 1.21375 1.31281 1.12281 0.91202 0.93014 1.25605 0.95377 0.95779 1.01535 1.69968 1.37482 1.23894 1.24172 0.85652 0.78682 0.78662 0.78872 1.20551 1.19919 1.20158 1.61730 1.10622 1.52545 1.01351 1.22185 0.87691 0.98641 1.01806 1.22084 1.04008 0.95139 0.88408 1.21224 0.78020 0.87213 0.84224 1.90758 1.37284 1.23240 1.84891 1.43641 1.62739 1.19107 1.04393 1.19037 0.92056 0.88718 0.87680 1.21881 1.05261 1.04181 0.89625 1.21733 0.91816 0.89829 1.00891 1.22918 1.10286 0.99083 0.94518 1.96725 1.95886 1.60019 1.42036 1.22837 0.93898 0.97995 0.86226 1.67757 1.16628 1.04324 1.34392 0.91747 0.95537 0.93786 0.92803 0.97034 0.91539 0.92749 0.90596 0.86153 0.72089 0.79649 0.80300 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.76 71.98 0.63 -5.19 16 2 C 0.22 10.96 2.06 44.17 0.09 11.05 16 3 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 4 C -0.52 -29.27 7.93 25.60 0.20 -29.07 16 5 H 0.05 2.97 6.39 -2.91 -0.02 2.95 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -51.78 11.32 21.45 0.24 -51.54 16 8 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.54 -23.69 4.36 -906.06 -3.95 -27.64 16 13 C 0.05 1.94 8.88 127.69 1.13 3.08 16 14 C 0.03 1.14 5.26 85.56 0.45 1.59 16 15 C 0.51 16.17 7.48 87.65 0.66 16.83 16 16 O -0.49 -20.36 12.60 -3.02 -0.04 -20.40 16 17 N -0.65 -14.14 5.39 -308.44 -1.66 -15.80 16 18 C 0.36 8.22 7.42 132.91 0.99 9.21 16 19 C -0.19 -2.54 9.94 22.49 0.22 -2.31 16 20 C -0.02 -0.20 9.93 22.46 0.22 0.02 16 21 C -0.18 -3.29 6.25 22.41 0.14 -3.15 16 22 Br -0.03 -0.47 33.73 -20.37 -0.69 -1.15 16 23 C 0.15 3.56 10.93 84.66 0.93 4.49 16 24 N -0.52 -15.29 7.89 -192.96 -1.52 -16.82 16 25 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.68 6.20 -2.39 -0.01 1.67 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 2.79 5.82 -2.39 -0.01 2.78 16 31 H 0.05 2.54 6.23 -2.39 -0.01 2.53 16 32 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 33 H 0.12 3.55 5.83 -2.39 -0.01 3.54 16 34 H 0.44 5.24 8.70 -92.71 -0.81 4.44 16 35 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -72.85 326.58 0.83 -72.02 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.30 Total: 7.12 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.11 Total: 7.88 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.89 Total: -111.80 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.04 Total: -20.40 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -0.69 Total: -1.15 kcal Total: -72.85 0.83 -72.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104688797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.396 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds