Wall clock time and date at job start Sat Apr 11 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47105 * 2 1 4 4 C 1.50703 * 109.47066 * 240.00380 * 2 1 3 5 5 H 1.08002 * 119.99641 * 274.40775 * 4 2 1 6 6 C 1.37876 * 119.99990 * 94.40857 * 4 2 1 7 7 N 1.31514 * 119.99789 * 184.00111 * 6 4 2 8 8 Si 1.86800 * 120.00172 * 4.00225 * 6 4 2 9 9 H 1.48500 * 109.47145 * 93.82428 * 8 6 4 10 10 H 1.48506 * 109.46668 * 213.82286 * 8 6 4 11 11 H 1.48497 * 109.47217 * 333.82132 * 8 6 4 12 12 N 1.46493 * 109.47437 * 120.00076 * 2 1 3 13 13 C 1.34770 * 120.00182 * 275.00096 * 12 2 1 14 14 O 1.21610 * 119.99943 * 359.97438 * 13 12 2 15 15 C 1.47435 * 120.00496 * 179.97438 * 13 12 2 16 16 C 1.39977 * 120.60000 * 5.81692 * 15 13 12 17 17 C 1.38407 * 118.35960 * 179.97438 * 16 15 13 18 18 Br 1.89101 * 120.25500 * 179.97438 * 17 16 15 19 19 C 1.38447 * 119.48650 * 0.02562 * 17 16 15 20 20 N 1.31853 * 121.20546 * 359.71194 * 19 17 16 21 21 C 1.32419 * 121.78457 * 0.57727 * 20 19 17 22 22 N 1.38301 * 119.81508 * 179.70766 * 21 20 19 23 23 C 1.46901 * 110.99925 * 303.97930 * 22 21 20 24 24 C 1.46894 * 111.00186 * 67.93427 * 22 21 20 25 25 H 1.08997 * 109.46938 * 175.10781 * 1 2 3 26 26 H 1.09000 * 109.46964 * 295.10931 * 1 2 3 27 27 H 1.08998 * 109.47154 * 55.10677 * 1 2 3 28 28 H 0.97004 * 120.00458 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00209 * 94.99940 * 12 2 1 30 30 H 1.08001 * 120.82219 * 359.96057 * 16 15 13 31 31 H 1.08000 * 119.39811 * 179.97438 * 19 17 16 32 32 H 1.09006 * 109.47222 * 183.95768 * 23 22 21 33 33 H 1.08997 * 109.47059 * 63.95621 * 23 22 21 34 34 H 1.09000 * 109.46844 * 303.95335 * 23 22 21 35 35 H 1.09007 * 109.47108 * 291.17748 * 24 22 21 36 36 H 1.08993 * 109.47396 * 51.18070 * 24 22 21 37 37 H 1.08999 * 109.47532 * 171.18253 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1445 -1.7845 -1.2259 6 6 2.3487 0.0111 -2.3621 7 7 2.7116 -0.6144 -3.4606 8 14 2.2617 1.8768 -2.3350 9 1 3.6005 2.4301 -2.0082 10 1 1.8335 2.3717 -3.6681 11 1 1.2820 2.3119 -1.3074 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3570 14 8 1.8583 1.1617 2.4116 15 6 2.6381 -0.7134 3.5610 16 6 3.0884 -2.0366 3.4860 17 6 3.5399 -2.6441 4.6447 18 35 4.1595 -4.4303 4.6049 19 6 3.5334 -1.9343 5.8334 20 7 3.1098 -0.6866 5.8816 21 6 2.6623 -0.0598 4.8045 22 7 2.2220 1.2476 4.9028 23 6 1.1610 1.3713 5.9113 24 6 3.3368 2.1578 5.1972 25 1 -0.3633 -1.0239 -0.0876 26 1 -0.3633 0.4361 0.9306 27 1 -0.3633 0.5879 -0.8429 28 1 2.9345 -0.1070 -4.2567 29 1 2.2491 -1.6317 1.1525 30 1 3.0834 -2.5705 2.5471 31 1 3.8856 -2.4099 6.7368 32 1 0.7844 2.3942 5.9189 33 1 1.5633 1.1249 6.8939 34 1 0.3482 0.6866 5.6693 35 1 3.6981 1.9744 6.2091 36 1 4.1445 1.9849 4.4861 37 1 2.9950 3.1895 5.1149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113159405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:37 Heat of formation + Delta-G solvation = 26.182462 kcal Electronic energy + Delta-G solvation = -21852.585976 eV Core-core repulsion = 18484.115358 eV Total energy + Delta-G solvation = -3368.470618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97130 -38.54462 -37.10486 -34.80910 -33.22658 -32.43307 -31.95059 -29.55289 -29.30176 -27.63822 -25.34463 -24.99748 -24.73030 -21.89321 -21.01736 -19.64311 -18.01923 -17.24845 -17.14377 -16.24006 -15.54618 -15.23637 -14.91776 -14.41520 -14.18609 -14.12559 -13.68361 -13.58841 -13.11274 -12.73568 -12.53562 -12.36549 -12.32055 -12.03203 -11.76941 -11.47484 -11.36956 -11.10994 -10.81250 -10.71977 -10.59271 -10.09818 -9.92249 -9.84813 -9.30016 -9.17981 -8.98082 -8.71553 -8.43358 -8.06256 -6.24098 -4.27997 0.42312 0.74302 1.25256 2.99945 3.25116 3.34427 3.42199 3.50600 3.79057 3.89144 4.21440 4.32189 4.46247 4.69212 4.80745 5.11124 5.15334 5.30365 5.36599 5.43244 5.49853 5.56523 5.72213 5.81372 5.86811 5.97955 6.35726 6.53420 6.68665 6.77472 6.94259 7.13255 7.19568 7.37403 7.49244 7.54355 8.12505 8.54477 8.76273 8.96661 9.37859 10.87513 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.004318 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.140438 B = 6482.291053 C = 8440.150163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.054 0.946 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.256 1.256 12 N -0.702 5.702 13 C 0.544 3.456 14 O -0.508 6.508 15 C -0.139 4.139 16 C -0.014 4.014 17 C -0.159 4.159 18 Br -0.030 7.030 19 C 0.158 3.842 20 N -0.509 5.509 21 C 0.355 3.645 22 N -0.471 5.471 23 C 0.033 3.967 24 C 0.040 3.960 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.388 0.612 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -4.988 20.364 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.072 0.928 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.180 1.180 12 N -0.352 5.352 13 C 0.327 3.673 14 O -0.384 6.384 15 C -0.147 4.147 16 C -0.042 4.042 17 C -0.241 4.241 18 Br 0.055 6.945 19 C -0.004 4.004 20 N -0.222 5.222 21 C 0.126 3.874 22 N -0.193 5.193 23 C -0.114 4.114 24 C -0.107 4.107 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.222 0.778 30 H 0.173 0.827 31 H 0.183 0.817 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.152 -4.121 20.478 20.999 hybrid contribution 0.354 0.028 -0.222 0.419 sum 2.506 -4.093 20.256 20.817 Atomic orbital electron populations 1.22213 0.98567 1.00513 0.99301 1.19197 0.90918 0.94532 0.82376 0.92793 1.21008 1.45356 0.95689 0.94793 0.90372 1.24930 0.93556 0.98635 0.95167 1.69884 1.44588 1.36177 1.01849 0.86910 0.79588 0.85892 0.77795 1.20029 1.21078 1.17968 1.46627 1.65170 1.13674 1.09715 1.17717 0.79872 0.87158 0.82538 1.90805 1.49070 1.14450 1.84084 1.21208 1.03377 0.93963 0.96180 1.21900 0.91011 0.93145 0.98178 1.22812 1.09148 0.94550 0.97552 1.96767 1.87375 1.11238 1.99162 1.22720 0.92468 0.89027 0.96145 1.68031 1.12212 1.09897 1.32049 1.19996 0.88986 0.90899 0.87504 1.59894 1.11033 1.00426 1.47956 1.22372 0.93665 1.03010 0.92352 1.22319 0.92430 0.96493 0.99444 0.93502 0.95099 0.92945 0.92264 0.77779 0.82737 0.81721 0.90424 0.94192 0.91626 0.94597 0.91440 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.47 37.16 0.35 -2.83 16 2 C 0.23 5.42 2.16 -69.08 -0.15 5.27 16 3 H 0.05 1.38 4.60 -51.93 -0.24 1.14 16 4 C -0.53 -13.99 9.05 -34.44 -0.31 -14.30 16 5 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 8 Si 0.87 21.21 27.16 -169.99 -4.62 16.59 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.13 6.46 56.52 0.37 -5.76 16 12 N -0.70 -13.96 5.02 -56.01 -0.28 -14.24 16 13 C 0.54 10.55 7.72 -12.52 -0.10 10.45 16 14 O -0.51 -11.32 14.75 5.27 0.08 -11.24 16 15 C -0.14 -2.21 5.91 -104.65 -0.62 -2.82 16 16 C -0.01 -0.19 9.38 -38.87 -0.36 -0.55 16 17 C -0.16 -1.82 6.24 -39.44 -0.25 -2.06 16 18 Br -0.03 -0.29 33.72 -68.01 -2.29 -2.59 16 19 C 0.16 1.76 10.92 -17.47 -0.19 1.57 16 20 N -0.51 -6.73 9.68 -12.18 -0.12 -6.85 16 21 C 0.36 5.35 5.29 -155.16 -0.82 4.53 16 22 N -0.47 -7.08 2.96 -188.74 -0.56 -7.64 16 23 C 0.03 0.41 9.34 60.07 0.56 0.97 16 24 C 0.04 0.51 9.49 60.06 0.57 1.08 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.14 8.06 -51.93 -0.42 0.72 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.39 6.79 6.73 -40.82 -0.27 6.52 16 30 H 0.16 1.85 6.55 -52.49 -0.34 1.50 16 31 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.45 7.88 -51.93 -0.41 0.04 16 34 H 0.06 0.83 8.12 -51.93 -0.42 0.40 16 35 H 0.04 0.41 8.13 -51.93 -0.42 -0.01 16 36 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -30.84 333.50 -8.06 -38.90 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.66 Total: 3.67 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.41 Total: 3.45 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.18 Total: -53.82 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.62 Total: 16.59 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.84 -8.06 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113159405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.085 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds