Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47105 * 2 1 4 4 C 1.50703 * 109.47066 * 240.00380 * 2 1 3 5 5 H 1.08002 * 119.99641 * 274.40775 * 4 2 1 6 6 C 1.37876 * 119.99990 * 94.40857 * 4 2 1 7 7 N 1.31514 * 119.99789 * 184.00111 * 6 4 2 8 8 Si 1.86800 * 120.00172 * 4.00225 * 6 4 2 9 9 H 1.48500 * 109.47145 * 93.82428 * 8 6 4 10 10 H 1.48506 * 109.46668 * 213.82286 * 8 6 4 11 11 H 1.48497 * 109.47217 * 333.82132 * 8 6 4 12 12 N 1.46493 * 109.47437 * 120.00076 * 2 1 3 13 13 C 1.34770 * 120.00182 * 275.00096 * 12 2 1 14 14 O 1.21610 * 119.99943 * 359.97438 * 13 12 2 15 15 C 1.47435 * 120.00496 * 179.97438 * 13 12 2 16 16 C 1.39977 * 120.60000 * 5.81692 * 15 13 12 17 17 C 1.38407 * 118.35960 * 179.97438 * 16 15 13 18 18 Br 1.89101 * 120.25500 * 179.97438 * 17 16 15 19 19 C 1.38447 * 119.48650 * 0.02562 * 17 16 15 20 20 N 1.31853 * 121.20546 * 359.71194 * 19 17 16 21 21 C 1.32419 * 121.78457 * 0.57727 * 20 19 17 22 22 N 1.38301 * 119.81508 * 179.70766 * 21 20 19 23 23 C 1.46901 * 110.99925 * 303.97930 * 22 21 20 24 24 C 1.46894 * 111.00186 * 67.93427 * 22 21 20 25 25 H 1.08997 * 109.46938 * 175.10781 * 1 2 3 26 26 H 1.09000 * 109.46964 * 295.10931 * 1 2 3 27 27 H 1.08998 * 109.47154 * 55.10677 * 1 2 3 28 28 H 0.97004 * 120.00458 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00209 * 94.99940 * 12 2 1 30 30 H 1.08001 * 120.82219 * 359.96057 * 16 15 13 31 31 H 1.08000 * 119.39811 * 179.97438 * 19 17 16 32 32 H 1.09006 * 109.47222 * 183.95768 * 23 22 21 33 33 H 1.08997 * 109.47059 * 63.95621 * 23 22 21 34 34 H 1.09000 * 109.46844 * 303.95335 * 23 22 21 35 35 H 1.09007 * 109.47108 * 291.17748 * 24 22 21 36 36 H 1.08993 * 109.47396 * 51.18070 * 24 22 21 37 37 H 1.08999 * 109.47532 * 171.18253 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1445 -1.7845 -1.2259 6 6 2.3487 0.0111 -2.3621 7 7 2.7116 -0.6144 -3.4606 8 14 2.2617 1.8768 -2.3350 9 1 3.6005 2.4301 -2.0082 10 1 1.8335 2.3717 -3.6681 11 1 1.2820 2.3119 -1.3074 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3570 14 8 1.8583 1.1617 2.4116 15 6 2.6381 -0.7134 3.5610 16 6 3.0884 -2.0366 3.4860 17 6 3.5399 -2.6441 4.6447 18 35 4.1595 -4.4303 4.6049 19 6 3.5334 -1.9343 5.8334 20 7 3.1098 -0.6866 5.8816 21 6 2.6623 -0.0598 4.8045 22 7 2.2220 1.2476 4.9028 23 6 1.1610 1.3713 5.9113 24 6 3.3368 2.1578 5.1972 25 1 -0.3633 -1.0239 -0.0876 26 1 -0.3633 0.4361 0.9306 27 1 -0.3633 0.5879 -0.8429 28 1 2.9345 -0.1070 -4.2567 29 1 2.2491 -1.6317 1.1525 30 1 3.0834 -2.5705 2.5471 31 1 3.8856 -2.4099 6.7368 32 1 0.7844 2.3942 5.9189 33 1 1.5633 1.1249 6.8939 34 1 0.3482 0.6866 5.6693 35 1 3.6981 1.9744 6.2091 36 1 4.1445 1.9849 4.4861 37 1 2.9950 3.1895 5.1149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113159405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = 6.325120 kcal Electronic energy + Delta-G solvation = -21853.447055 eV Core-core repulsion = 18484.115358 eV Total energy + Delta-G solvation = -3369.331697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07278 -40.05668 -38.12789 -36.59212 -34.56218 -34.00225 -33.20231 -31.18877 -30.28559 -28.61073 -27.30858 -26.04191 -25.91444 -23.19876 -22.38202 -21.31390 -19.62279 -18.50213 -18.26675 -17.83423 -16.91421 -16.61845 -16.09509 -15.89919 -15.57752 -15.28093 -15.09458 -14.71106 -14.60197 -14.24547 -14.21892 -13.84643 -13.25270 -13.22313 -13.03144 -13.00115 -12.76804 -12.75413 -12.42799 -12.27912 -11.83171 -11.59127 -11.21177 -11.12682 -11.00202 -10.84279 -10.71824 -9.98901 -9.74071 -9.49586 -8.36822 -6.43080 -0.63366 -0.29098 0.34624 1.30932 1.36631 1.48028 1.82349 2.29118 2.31019 2.52402 2.56863 3.04082 3.24978 3.48315 3.60356 3.75890 4.10541 4.21028 4.34436 4.38285 4.52285 4.53638 4.55950 4.70863 4.77672 4.86311 4.86970 4.89566 4.99077 5.13170 5.38590 5.48696 5.75069 5.80015 6.09939 6.15416 6.46797 6.61644 6.89716 7.23086 7.45535 8.78004 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.004318 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.140438 B = 6482.291053 C = 8440.150163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.236 3.764 3 H 0.035 0.965 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.924 3.076 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.251 1.251 12 N -0.703 5.703 13 C 0.547 3.453 14 O -0.541 6.541 15 C -0.166 4.166 16 C -0.008 4.008 17 C -0.158 4.158 18 Br -0.008 7.008 19 C 0.172 3.828 20 N -0.513 5.513 21 C 0.353 3.647 22 N -0.499 5.499 23 C 0.037 3.963 24 C 0.044 3.956 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.270 0.730 29 H 0.399 0.601 30 H 0.162 0.838 31 H 0.200 0.800 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -5.381 22.535 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.133 3.867 3 H 0.053 0.947 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.166 4.166 7 N -0.569 5.569 8 Si 0.749 3.251 9 H -0.201 1.201 10 H -0.203 1.203 11 H -0.175 1.175 12 N -0.354 5.354 13 C 0.333 3.667 14 O -0.419 6.419 15 C -0.174 4.174 16 C -0.036 4.036 17 C -0.240 4.240 18 Br 0.077 6.923 19 C 0.010 3.990 20 N -0.226 5.226 21 C 0.124 3.876 22 N -0.222 5.222 23 C -0.109 4.109 24 C -0.102 4.102 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.235 0.765 30 H 0.179 0.821 31 H 0.217 0.783 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.343 -4.533 22.674 23.241 hybrid contribution 0.343 -0.004 -0.780 0.852 sum 2.686 -4.537 21.894 22.520 Atomic orbital electron populations 1.22102 0.97127 1.01151 0.99512 1.18938 0.91928 0.93332 0.82515 0.94684 1.21182 1.44367 0.94884 0.95892 0.92491 1.25583 0.93702 1.02347 0.94991 1.69980 1.46553 1.37708 1.02617 0.86076 0.79479 0.81495 0.78064 1.20133 1.20263 1.17532 1.46343 1.65629 1.14180 1.09219 1.18093 0.78801 0.86801 0.83032 1.90773 1.50487 1.15918 1.84742 1.20852 1.06344 0.95186 0.94979 1.21972 0.90246 0.92178 0.99248 1.22899 1.08499 0.95567 0.97006 1.96807 1.87023 1.09368 1.99135 1.23334 0.90260 0.88193 0.97188 1.68123 1.12617 1.10768 1.31056 1.20028 0.88841 0.91120 0.87585 1.59873 1.12119 1.00835 1.49395 1.22374 0.92817 1.03556 0.92184 1.22296 0.91607 0.96666 0.99647 0.92551 0.94392 0.93278 0.92076 0.76494 0.82059 0.78288 0.89283 0.93154 0.92429 0.93210 0.93033 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 9.47 71.98 0.68 -5.28 16 2 C 0.24 11.03 2.16 44.25 0.10 11.13 16 3 H 0.04 1.79 4.60 -2.39 -0.01 1.78 16 4 C -0.52 -27.94 9.05 25.60 0.23 -27.71 16 5 H 0.06 3.22 8.06 -2.91 -0.02 3.19 16 6 C 0.03 1.90 5.47 84.65 0.46 2.36 16 7 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 8 Si 0.92 43.98 27.16 68.60 1.86 45.85 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.25 -11.70 6.46 99.48 0.64 -11.06 16 12 N -0.70 -27.86 5.02 -449.37 -2.26 -30.12 16 13 C 0.55 21.15 7.72 86.67 0.67 21.82 16 14 O -0.54 -24.18 14.75 -4.06 -0.06 -24.24 16 15 C -0.17 -5.12 5.91 -19.88 -0.12 -5.23 16 16 C -0.01 -0.21 9.38 22.73 0.21 0.01 16 17 C -0.16 -3.21 6.24 22.36 0.14 -3.07 16 18 Br -0.01 -0.13 33.72 -20.37 -0.69 -0.82 16 19 C 0.17 3.29 10.92 84.74 0.93 4.21 16 20 N -0.51 -12.38 9.68 -192.45 -1.86 -14.25 16 21 C 0.35 10.21 5.29 133.63 0.71 10.92 16 22 N -0.50 -14.57 2.96 -751.06 -2.23 -16.80 16 23 C 0.04 0.86 9.34 127.69 1.19 2.06 16 24 C 0.04 1.09 9.49 127.69 1.21 2.31 16 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 2.09 8.06 -2.39 -0.02 2.07 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.40 13.88 6.73 -92.71 -0.62 13.26 16 30 H 0.16 3.65 6.55 -2.91 -0.02 3.63 16 31 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.05 1.04 7.88 -2.39 -0.02 1.02 16 34 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 35 H 0.05 1.07 8.13 -2.38 -0.02 1.05 16 36 H 0.05 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.95 333.50 1.90 -64.05 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.41 Total: 17.40 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.41 Total: 13.50 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -6.05 Total: -115.74 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.86 Total: 45.85 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.69 Total: -0.82 kcal Total: -65.95 1.90 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113159405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.376 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds