Wall clock time and date at job start Sat Apr 11 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35922 * 117.00008 * 2 1 4 4 C 1.38743 * 120.03968 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94783 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.04742 * 0.02562 * 5 4 3 7 7 Br 1.89099 * 119.95047 * 179.97438 * 6 5 4 8 8 C 1.38320 * 120.08920 * 0.02562 * 6 5 4 9 9 C 1.50698 * 119.97180 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47294 * 279.99614 * 9 8 6 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46495 * 119.99828 * 0.02562 * 12 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47598 * 90.00303 * 14 12 10 16 16 H 1.08005 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.37877 * 120.00538 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99774 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00058 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46761 * 60.00209 * 19 17 15 21 21 H 1.48496 * 109.46664 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47077 * 300.00223 * 19 17 15 23 23 C 1.38160 * 120.04920 * 0.25156 * 8 6 5 24 24 H 1.08999 * 109.47236 * 60.00439 * 1 2 3 25 25 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47279 * 299.99753 * 1 2 3 27 27 H 1.07996 * 120.02894 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.97142 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46665 * 159.99995 * 9 8 6 30 30 H 1.09000 * 109.47722 * 40.00327 * 9 8 6 31 31 H 1.08997 * 109.47477 * 90.00366 * 13 12 10 32 32 H 1.09004 * 109.46971 * 209.99938 * 13 12 10 33 33 H 1.08993 * 109.47768 * 330.00002 * 13 12 10 34 34 H 1.09008 * 109.47096 * 209.99661 * 14 12 10 35 35 H 1.09003 * 109.47776 * 329.99537 * 14 12 10 36 36 H 0.97002 * 119.99965 * 179.97438 * 18 17 15 37 37 H 1.07992 * 120.02244 * 179.70734 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9202 3.6049 0.0000 6 6 3.3021 3.6762 -0.0016 7 35 4.1604 5.3612 -0.0031 8 6 4.0563 2.5168 -0.0032 9 6 5.5611 2.5976 -0.0055 10 6 6.0474 2.8713 -1.4055 11 8 5.2503 2.9896 -2.3119 12 7 7.3679 2.9846 -1.6501 13 6 8.3306 2.8411 -0.5553 14 6 7.8404 3.2512 -3.0109 15 6 7.9287 4.7396 -3.2295 16 1 7.6592 5.4191 -2.4344 17 6 8.3533 5.2341 -4.4445 18 7 8.6809 4.4068 -5.4129 19 14 8.4620 7.0791 -4.7156 20 1 9.4110 7.6681 -3.7371 21 1 8.9411 7.3493 -6.0949 22 1 7.1196 7.6865 -4.5304 23 6 3.4311 1.2847 -0.0085 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2126 2.3200 0.0005 28 1 1.3330 4.5113 0.0000 29 1 5.9762 1.6526 0.3450 30 1 5.8829 3.4028 0.6548 31 1 8.6229 1.7951 -0.4631 32 1 9.2119 3.4474 -0.7645 33 1 7.8735 3.1740 0.3765 34 1 8.8256 2.8050 -3.1474 35 1 7.1433 2.8192 -3.7289 36 1 8.9793 4.7546 -6.2678 37 1 4.0204 0.3798 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158015882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:44 Heat of formation + Delta-G solvation = -63.297194 kcal Electronic energy + Delta-G solvation = -21463.075200 eV Core-core repulsion = 18058.431703 eV Total energy + Delta-G solvation = -3404.643498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40485 -40.45300 -38.56693 -36.49403 -34.74614 -33.76672 -32.85921 -30.70211 -29.86403 -28.32797 -27.87314 -27.12832 -24.81644 -23.59837 -22.30319 -20.09063 -18.73277 -18.65357 -17.83593 -17.56558 -17.02584 -16.85663 -16.65753 -16.30358 -15.96515 -15.29344 -14.83915 -14.51956 -14.34192 -14.26233 -13.75069 -13.66700 -13.41088 -13.15108 -13.07208 -12.85082 -12.76882 -12.69626 -12.48513 -12.40984 -12.16706 -11.95079 -11.69160 -11.26321 -11.10797 -10.65706 -10.61954 -9.92972 -9.35530 -9.13188 -8.19862 -6.33458 0.10451 0.20851 0.76129 1.35318 1.39829 1.46735 1.90714 2.22721 2.34819 2.43180 2.69721 3.09596 3.54780 3.69286 3.90917 4.02087 4.13783 4.22326 4.39058 4.42059 4.44136 4.50634 4.60184 4.74609 4.76505 4.85874 4.99009 4.99525 5.06315 5.16985 5.26626 5.27369 5.52008 5.60132 5.88408 6.10361 6.34311 6.73527 6.83700 7.31806 7.54545 8.86925 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.004105 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.952479 B = 6819.898956 C = 7542.362228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.137 3.863 4 C -0.200 4.200 5 C -0.057 4.057 6 C -0.129 4.129 7 Br -0.060 7.060 8 C -0.009 4.009 9 C -0.102 4.102 10 C 0.507 3.493 11 O -0.582 6.582 12 N -0.611 5.611 13 C 0.075 3.925 14 C 0.263 3.737 15 C -0.536 4.536 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.280 1.280 23 C -0.150 4.150 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.023 0.977 35 H -0.003 1.003 36 H 0.266 0.734 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -5.454 18.460 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.091 3.909 4 C -0.220 4.220 5 C -0.076 4.076 6 C -0.209 4.209 7 Br 0.025 6.975 8 C -0.011 4.011 9 C -0.142 4.142 10 C 0.295 3.705 11 O -0.462 6.462 12 N -0.343 5.343 13 C -0.067 4.067 14 C 0.141 3.859 15 C -0.575 4.575 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.205 1.205 23 C -0.169 4.169 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.092 0.908 27 H 0.184 0.816 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.075 0.925 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.188 -4.971 17.810 23.307 hybrid contribution -0.071 0.724 -0.790 1.074 sum -14.258 -4.247 17.021 22.606 Atomic orbital electron populations 1.23427 0.76027 1.05900 1.02571 1.86074 1.23847 1.26118 1.88181 1.19109 0.92106 0.85149 0.94578 1.21478 1.01668 0.90757 1.08063 1.21108 0.91669 0.99279 0.95575 1.21737 0.95775 0.90934 1.12449 1.96692 1.80258 1.22797 1.97707 1.19104 0.94648 0.91628 0.95739 1.20894 0.91747 1.07045 0.94466 1.20773 0.82107 0.76668 0.90958 1.90659 1.55088 1.52200 1.48295 1.48114 1.06205 1.69378 1.10571 1.21960 0.93101 1.02411 0.89194 1.18706 0.93259 0.95028 0.78880 1.21663 1.44136 0.92872 0.98800 0.92947 1.25796 0.94885 1.02852 0.95462 1.70041 1.45832 1.36489 1.04543 0.85578 0.78492 0.79711 0.77744 1.18432 1.20264 1.20536 1.20376 0.92436 0.97542 1.06581 0.91895 0.86072 0.90843 0.81596 0.83097 0.84611 0.86147 0.90811 0.91559 0.89010 0.95896 0.98534 0.92502 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.04 10.50 -92.67 -0.97 -8.01 16 3 C 0.14 3.37 6.69 22.50 0.15 3.52 16 4 C -0.20 -4.34 9.04 22.36 0.20 -4.14 16 5 C -0.06 -1.42 9.78 22.27 0.22 -1.21 16 6 C -0.13 -3.96 6.10 22.32 0.14 -3.82 16 7 Br -0.06 -1.94 31.67 -20.37 -0.65 -2.59 16 8 C -0.01 -0.27 4.43 -19.86 -0.09 -0.36 16 9 C -0.10 -3.01 3.80 29.10 0.11 -2.90 16 10 C 0.51 21.38 7.27 87.66 0.64 22.02 16 11 O -0.58 -30.65 15.53 -3.02 -0.05 -30.70 16 12 N -0.61 -26.34 2.86 -851.15 -2.43 -28.77 16 13 C 0.08 2.26 10.24 127.77 1.31 3.57 16 14 C 0.26 14.46 5.16 85.63 0.44 14.90 16 15 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 16 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 17 C 0.01 0.52 5.46 84.66 0.46 0.98 16 18 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 19 Si 0.96 46.02 29.54 68.60 2.03 48.05 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 23 C -0.15 -4.12 9.61 22.36 0.21 -3.91 16 24 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 27 H 0.17 2.36 6.30 -2.91 -0.02 2.34 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.14 2.97 7.97 -2.39 -0.02 2.95 16 30 H 0.12 3.19 6.40 -2.39 -0.02 3.17 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 33 H 0.09 2.11 6.44 -2.39 -0.02 2.09 16 34 H 0.02 1.28 8.07 -2.38 -0.02 1.26 16 35 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.15 3.57 8.04 -2.91 -0.02 3.54 16 Total: -1.00 -78.75 335.95 4.44 -74.31 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.08 Total: 6.04 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.15 Total: -1.34 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.15 Total: -85.76 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.02 Total: -38.71 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 35 Polarization: -1.94 SS G_CDS: -0.65 Total: -2.59 kcal Total: -78.75 4.44 -74.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158015882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.009 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds