Wall clock time and date at job start Sat Apr 11 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35916 * 117.00235 * 2 1 4 4 C 1.38756 * 120.04304 * 359.97438 * 3 2 1 5 5 C 1.38114 * 119.95212 * 180.02562 * 4 3 2 6 6 C 1.38370 * 120.04958 * 0.02876 * 5 4 3 7 7 Br 1.89099 * 119.95484 * 179.97438 * 6 5 4 8 8 C 1.38319 * 120.08946 * 359.97438 * 6 5 4 9 9 C 1.50696 * 119.97739 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47260 * 279.99778 * 9 8 6 11 11 O 1.21281 * 119.99927 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47185 * 325.00421 * 13 12 10 15 15 C 1.53003 * 109.46991 * 85.00701 * 13 12 10 16 16 C 1.50702 * 109.47119 * 205.00085 * 13 12 10 17 17 H 1.08007 * 119.99981 * 354.48131 * 16 13 12 18 18 C 1.37872 * 120.00181 * 174.48618 * 16 13 12 19 19 N 1.31507 * 120.00188 * 164.58940 * 18 16 13 20 20 Si 1.86797 * 119.99894 * 344.86064 * 18 16 13 21 21 H 1.48501 * 109.47054 * 269.72685 * 20 18 16 22 22 H 1.48506 * 109.47355 * 29.72399 * 20 18 16 23 23 H 1.48500 * 109.47516 * 149.72369 * 20 18 16 24 24 C 1.38165 * 120.04398 * 0.24883 * 8 6 5 25 25 H 1.09003 * 109.47565 * 300.00107 * 1 2 3 26 26 H 1.09006 * 109.46977 * 60.00230 * 1 2 3 27 27 H 1.09000 * 109.47610 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.02275 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.97573 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47104 * 159.99324 * 9 8 6 31 31 H 1.09001 * 109.47310 * 39.99938 * 9 8 6 32 32 H 0.97002 * 120.00007 * 0.02562 * 12 10 9 33 33 H 1.08992 * 109.47288 * 53.53833 * 15 13 12 34 34 H 1.08997 * 109.47143 * 173.55043 * 15 13 12 35 35 H 1.09005 * 109.46269 * 293.54281 * 15 13 12 36 36 H 0.97004 * 120.00365 * 355.18112 * 19 18 16 37 37 H 1.08010 * 120.02061 * 179.70912 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9202 3.6049 -0.0011 6 6 3.3021 3.6762 -0.0017 7 35 4.1605 5.3612 -0.0031 8 6 4.0564 2.5168 -0.0012 9 6 5.5612 2.5975 -0.0024 10 6 6.0485 2.8694 -1.4023 11 8 5.2523 2.9857 -2.3097 12 7 7.3691 2.9833 -1.6459 13 6 7.8429 3.2471 -3.0069 14 1 7.1964 2.7382 -3.7217 15 6 7.8129 4.7533 -3.2743 16 6 9.2538 2.7387 -3.1550 17 1 9.7798 2.3476 -2.2966 18 6 9.8732 2.7729 -4.3863 19 7 11.1769 2.6226 -4.4710 20 14 8.8615 3.0404 -5.9336 21 1 8.4254 1.7273 -6.4730 22 1 7.6684 3.8630 -5.6090 23 1 9.6860 3.7435 -6.9489 24 6 3.4310 1.2848 -0.0053 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2127 2.3201 -0.0005 29 1 1.3331 4.5114 -0.0019 30 1 5.9759 1.6530 0.3497 31 1 5.8824 3.4036 0.6571 32 1 8.0060 2.8899 -0.9202 33 1 8.3661 5.2724 -2.4917 34 1 8.2712 4.9598 -4.2415 35 1 6.7797 5.1006 -3.2803 36 1 11.7111 2.5577 -3.6639 37 1 4.0204 0.3797 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159819249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:49 Heat of formation + Delta-G solvation = -51.374276 kcal Electronic energy + Delta-G solvation = -21318.471094 eV Core-core repulsion = 17914.344613 eV Total energy + Delta-G solvation = -3404.126481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46451 -39.09990 -37.62238 -34.92430 -32.84393 -32.34811 -31.92260 -30.03198 -29.29510 -27.38537 -27.04203 -24.76712 -22.77483 -21.93337 -20.59637 -19.49750 -18.10968 -17.61054 -16.71809 -16.30951 -15.95083 -15.94369 -15.32681 -14.73879 -14.32036 -13.82281 -13.76181 -13.46525 -13.21505 -12.73272 -12.58137 -12.37373 -12.18425 -11.99771 -11.77465 -11.68829 -11.49217 -11.25951 -11.12912 -10.51576 -10.34152 -10.09574 -10.08584 -9.63836 -9.33720 -8.99067 -8.90583 -8.38485 -8.22277 -8.09139 -6.54337 -4.19303 1.04868 1.12782 1.72728 2.98858 3.30758 3.41061 3.43726 3.47531 3.62514 4.13026 4.46365 4.48908 4.54842 4.78466 4.85696 4.90462 5.05121 5.17511 5.20486 5.22210 5.40334 5.48449 5.60639 5.75164 5.88986 6.06081 6.19576 6.41073 6.45035 6.60464 6.73033 7.01812 7.12049 7.33922 7.44780 7.70494 8.26634 8.52412 8.73735 9.03328 9.49378 10.85000 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003843 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.093907 B = 7284.033653 C = 8447.302590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.141 3.859 4 C -0.208 4.208 5 C -0.051 4.051 6 C -0.109 4.109 7 Br -0.047 7.047 8 C 0.012 3.988 9 C -0.119 4.119 10 C 0.509 3.491 11 O -0.543 6.543 12 N -0.702 5.702 13 C 0.243 3.757 14 H 0.042 0.958 15 C -0.153 4.153 16 C -0.616 4.616 17 H 0.062 0.938 18 C 0.040 3.960 19 N -0.901 5.901 20 Si 1.037 2.963 21 H -0.284 1.284 22 H -0.266 1.266 23 H -0.284 1.284 24 C -0.136 4.136 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.392 0.608 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.269 0.731 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.852 0.982 14.114 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.096 3.904 4 C -0.228 4.228 5 C -0.071 4.071 6 C -0.189 4.189 7 Br 0.039 6.961 8 C 0.010 3.990 9 C -0.159 4.159 10 C 0.294 3.706 11 O -0.422 6.422 12 N -0.351 5.351 13 C 0.140 3.860 14 H 0.060 0.940 15 C -0.212 4.212 16 C -0.653 4.653 17 H 0.080 0.920 18 C -0.166 4.166 19 N -0.534 5.534 20 Si 0.864 3.136 21 H -0.211 1.211 22 H -0.191 1.191 23 H -0.210 1.210 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.225 0.775 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.880 1.588 11.779 24.026 hybrid contribution -0.140 -0.387 2.051 2.092 sum -21.020 1.200 13.830 25.190 Atomic orbital electron populations 1.23084 0.78278 1.04057 1.01448 1.86093 1.21484 1.26719 1.88434 1.18988 0.92164 0.84223 0.95052 1.21145 1.00094 0.91765 1.09762 1.20800 0.92257 0.97877 0.96139 1.21503 0.94701 0.91347 1.11310 1.96690 1.79886 1.21875 1.97656 1.18977 0.94503 0.91059 0.94495 1.20921 0.91602 1.05363 0.98000 1.20047 0.83461 0.77728 0.89398 1.90675 1.54554 1.50953 1.45973 1.46226 1.05490 1.70651 1.12688 1.19027 0.95529 0.92133 0.79310 0.94032 1.22426 0.98723 0.99099 1.00942 1.22115 0.97810 1.47332 0.98087 0.92032 1.25663 0.96598 0.92998 1.01363 1.70825 1.04995 1.44967 1.32572 0.84201 0.76007 0.77682 0.75666 1.21071 1.19147 1.20998 1.20223 0.91454 0.97732 1.06137 0.92575 0.92467 0.88141 0.84836 0.84855 0.87720 0.87439 0.77495 0.93893 0.92616 0.95042 0.92086 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.53 10.50 -19.48 -0.20 -3.73 16 3 C 0.14 1.75 6.69 -39.22 -0.26 1.49 16 4 C -0.21 -2.27 9.04 -39.44 -0.36 -2.63 16 5 C -0.05 -0.61 9.78 -39.58 -0.39 -0.99 16 6 C -0.11 -1.53 6.10 -39.50 -0.24 -1.77 16 7 Br -0.05 -0.65 31.67 -68.01 -2.15 -2.81 16 8 C 0.01 0.17 4.43 -104.62 -0.46 -0.29 16 9 C -0.12 -1.68 5.25 -29.04 -0.15 -1.83 16 10 C 0.51 9.72 7.39 -10.99 -0.08 9.63 16 11 O -0.54 -12.33 15.61 5.56 0.09 -12.24 16 12 N -0.70 -14.24 5.07 -54.93 -0.28 -14.51 16 13 C 0.24 5.91 2.11 -69.08 -0.15 5.77 16 14 H 0.04 1.10 6.21 -51.93 -0.32 0.78 16 15 C -0.15 -3.54 8.76 37.16 0.33 -3.21 16 16 C -0.62 -16.75 9.02 -34.44 -0.31 -17.06 16 17 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 18 C 0.04 1.14 5.33 -17.82 -0.09 1.04 16 19 N -0.90 -27.03 13.69 55.43 0.76 -26.27 16 20 Si 1.04 25.39 26.17 -169.99 -4.45 20.94 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.20 5.53 56.52 0.31 -5.89 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.14 -1.84 9.61 -39.44 -0.38 -2.22 16 25 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 26 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 29 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 30 H 0.10 1.22 8.01 -51.93 -0.42 0.80 16 31 H 0.11 1.35 7.14 -51.93 -0.37 0.98 16 32 H 0.39 7.00 8.53 -40.82 -0.35 6.65 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.30 5.06 -51.93 -0.26 1.04 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 37 H 0.14 1.71 8.04 -52.48 -0.42 1.29 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -33.12 329.53 -7.45 -40.56 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.62 Total: 4.00 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.56 Total: -10.90 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.48 Total: -40.78 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.12 Total: -15.98 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.45 Total: 20.94 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.15 Total: -2.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.12 -7.45 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159819249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.812 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds