Wall clock time and date at job start Sat Apr 11 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35916 * 117.00235 * 2 1 4 4 C 1.38756 * 120.04304 * 359.97438 * 3 2 1 5 5 C 1.38114 * 119.95212 * 180.02562 * 4 3 2 6 6 C 1.38370 * 120.04958 * 0.02876 * 5 4 3 7 7 Br 1.89099 * 119.95484 * 179.97438 * 6 5 4 8 8 C 1.38319 * 120.08946 * 359.97438 * 6 5 4 9 9 C 1.50696 * 119.97739 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47260 * 279.99778 * 9 8 6 11 11 O 1.21281 * 119.99927 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47185 * 325.00421 * 13 12 10 15 15 C 1.53003 * 109.46991 * 85.00701 * 13 12 10 16 16 C 1.50702 * 109.47119 * 205.00085 * 13 12 10 17 17 H 1.08007 * 119.99981 * 354.48131 * 16 13 12 18 18 C 1.37872 * 120.00181 * 174.48618 * 16 13 12 19 19 N 1.31507 * 120.00188 * 164.58940 * 18 16 13 20 20 Si 1.86797 * 119.99894 * 344.86064 * 18 16 13 21 21 H 1.48501 * 109.47054 * 269.72685 * 20 18 16 22 22 H 1.48506 * 109.47355 * 29.72399 * 20 18 16 23 23 H 1.48500 * 109.47516 * 149.72369 * 20 18 16 24 24 C 1.38165 * 120.04398 * 0.24883 * 8 6 5 25 25 H 1.09003 * 109.47565 * 300.00107 * 1 2 3 26 26 H 1.09006 * 109.46977 * 60.00230 * 1 2 3 27 27 H 1.09000 * 109.47610 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.02275 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.97573 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47104 * 159.99324 * 9 8 6 31 31 H 1.09001 * 109.47310 * 39.99938 * 9 8 6 32 32 H 0.97002 * 120.00007 * 0.02562 * 12 10 9 33 33 H 1.08992 * 109.47288 * 53.53833 * 15 13 12 34 34 H 1.08997 * 109.47143 * 173.55043 * 15 13 12 35 35 H 1.09005 * 109.46269 * 293.54281 * 15 13 12 36 36 H 0.97004 * 120.00365 * 355.18112 * 19 18 16 37 37 H 1.08010 * 120.02061 * 179.70912 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9202 3.6049 -0.0011 6 6 3.3021 3.6762 -0.0017 7 35 4.1605 5.3612 -0.0031 8 6 4.0564 2.5168 -0.0012 9 6 5.5612 2.5975 -0.0024 10 6 6.0485 2.8694 -1.4023 11 8 5.2523 2.9857 -2.3097 12 7 7.3691 2.9833 -1.6459 13 6 7.8429 3.2471 -3.0069 14 1 7.1964 2.7382 -3.7217 15 6 7.8129 4.7533 -3.2743 16 6 9.2538 2.7387 -3.1550 17 1 9.7798 2.3476 -2.2966 18 6 9.8732 2.7729 -4.3863 19 7 11.1769 2.6226 -4.4710 20 14 8.8615 3.0404 -5.9336 21 1 8.4254 1.7273 -6.4730 22 1 7.6684 3.8630 -5.6090 23 1 9.6860 3.7435 -6.9489 24 6 3.4310 1.2848 -0.0053 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2127 2.3201 -0.0005 29 1 1.3331 4.5114 -0.0019 30 1 5.9759 1.6530 0.3497 31 1 5.8824 3.4036 0.6571 32 1 8.0060 2.8899 -0.9202 33 1 8.3661 5.2724 -2.4917 34 1 8.2712 4.9598 -4.2415 35 1 6.7797 5.1006 -3.2803 36 1 11.7111 2.5577 -3.6639 37 1 4.0204 0.3797 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159819249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:49 Heat of formation + Delta-G solvation = -73.605298 kcal Electronic energy + Delta-G solvation = -21319.435104 eV Core-core repulsion = 17914.344613 eV Total energy + Delta-G solvation = -3405.090491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41869 -40.48692 -38.61622 -36.75911 -34.44762 -33.86093 -32.87947 -31.65169 -30.35028 -28.36668 -27.86289 -26.83041 -23.78730 -23.23650 -21.98327 -21.16402 -19.80408 -18.80495 -17.90370 -17.58659 -17.02774 -16.86452 -16.67451 -15.96364 -15.65653 -15.24638 -14.88492 -14.78850 -14.64280 -14.29671 -14.20172 -13.78767 -13.50971 -13.34061 -13.03304 -12.84372 -12.71565 -12.46900 -12.43967 -12.04009 -11.96687 -11.52061 -11.28873 -11.13828 -11.09325 -10.82769 -10.55425 -9.97557 -9.83687 -9.15164 -8.78076 -6.43593 0.08767 0.19567 0.72157 1.48113 1.49227 1.70648 1.81556 2.22499 2.39600 2.43665 2.74329 3.01984 3.51891 3.67966 3.98223 4.04185 4.16112 4.21931 4.39457 4.41015 4.45168 4.53302 4.59114 4.73235 4.74795 4.81480 4.85765 4.97904 5.11531 5.16394 5.23729 5.45253 5.51185 5.67247 5.68922 6.02713 6.33354 6.54095 6.88155 7.29260 7.48502 8.60494 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003843 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.093907 B = 7284.033653 C = 8447.302590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.137 3.863 4 C -0.200 4.200 5 C -0.054 4.054 6 C -0.128 4.128 7 Br -0.055 7.055 8 C -0.007 4.007 9 C -0.108 4.108 10 C 0.511 3.489 11 O -0.579 6.579 12 N -0.705 5.705 13 C 0.247 3.753 14 H 0.022 0.978 15 C -0.146 4.146 16 C -0.610 4.610 17 H 0.042 0.958 18 C -0.005 4.005 19 N -0.930 5.930 20 Si 1.071 2.929 21 H -0.277 1.277 22 H -0.250 1.250 23 H -0.279 1.279 24 C -0.153 4.153 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.404 0.596 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.339 1.007 14.808 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.090 3.910 4 C -0.219 4.219 5 C -0.074 4.074 6 C -0.208 4.208 7 Br 0.030 6.970 8 C -0.009 4.009 9 C -0.148 4.148 10 C 0.297 3.703 11 O -0.459 6.459 12 N -0.354 5.354 13 C 0.142 3.858 14 H 0.040 0.960 15 C -0.205 4.205 16 C -0.648 4.648 17 H 0.060 0.940 18 C -0.205 4.205 19 N -0.565 5.565 20 Si 0.893 3.107 21 H -0.203 1.203 22 H -0.174 1.174 23 H -0.204 1.204 24 C -0.172 4.172 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.238 0.762 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.378 1.604 12.519 26.567 hybrid contribution 0.530 -0.484 1.921 2.051 sum -22.848 1.120 14.440 27.052 Atomic orbital electron populations 1.23429 0.75973 1.05870 1.02636 1.86080 1.23904 1.26289 1.88157 1.19129 0.92078 0.85205 0.94546 1.21493 1.01686 0.90774 1.07975 1.21117 0.91690 0.99210 0.95338 1.21696 0.95692 0.90892 1.12471 1.96665 1.80216 1.22382 1.97739 1.19024 0.94371 0.91625 0.95922 1.20872 0.92039 1.07255 0.94622 1.20766 0.82325 0.76126 0.91049 1.90650 1.55251 1.52277 1.47719 1.46079 1.06617 1.71184 1.11514 1.18713 0.93263 0.92579 0.81204 0.95982 1.22311 0.99117 0.98070 1.01000 1.22282 0.99059 1.46207 0.97285 0.93958 1.26782 0.96739 0.92642 1.04345 1.70921 1.05958 1.47533 1.32109 0.83758 0.75514 0.78283 0.73133 1.20335 1.17439 1.20441 1.20383 0.92496 0.97630 1.06732 0.90846 0.91692 0.86235 0.81605 0.82812 0.85154 0.85837 0.76156 0.93035 0.93108 0.94506 0.93155 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.74 10.50 -92.61 -0.97 -7.71 16 3 C 0.14 3.12 6.69 22.50 0.15 3.27 16 4 C -0.20 -3.82 9.04 22.36 0.20 -3.61 16 5 C -0.05 -1.16 9.78 22.27 0.22 -0.95 16 6 C -0.13 -3.40 6.10 22.32 0.14 -3.26 16 7 Br -0.06 -1.48 31.67 -20.37 -0.65 -2.13 16 8 C -0.01 -0.19 4.43 -19.86 -0.09 -0.28 16 9 C -0.11 -2.91 5.25 29.10 0.15 -2.76 16 10 C 0.51 18.98 7.39 87.66 0.65 19.63 16 11 O -0.58 -25.89 15.61 -3.03 -0.05 -25.94 16 12 N -0.70 -28.03 5.07 -446.10 -2.26 -30.29 16 13 C 0.25 11.89 2.11 44.25 0.09 11.98 16 14 H 0.02 1.17 6.21 -2.39 -0.01 1.15 16 15 C -0.15 -6.59 8.76 71.98 0.63 -5.96 16 16 C -0.61 -33.37 9.02 25.60 0.23 -33.14 16 17 H 0.04 2.43 7.96 -2.91 -0.02 2.40 16 18 C 0.00 -0.26 5.33 84.65 0.45 0.19 16 19 N -0.93 -56.55 13.69 21.44 0.29 -56.26 16 20 Si 1.07 50.94 26.17 68.60 1.80 52.74 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.25 -11.17 5.53 99.48 0.55 -10.62 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 C -0.15 -3.95 9.61 22.36 0.21 -3.74 16 25 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 26 H 0.06 0.60 7.66 -2.38 -0.02 0.58 16 27 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.17 1.96 6.30 -2.91 -0.02 1.95 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.13 2.78 8.01 -2.39 -0.02 2.76 16 31 H 0.12 2.90 7.14 -2.39 -0.02 2.88 16 32 H 0.40 14.09 8.53 -92.71 -0.79 13.30 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 2.31 5.06 -2.39 -0.01 2.29 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 37 H 0.14 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -71.17 329.53 2.43 -68.74 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.12 Total: 18.20 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.15 Total: -17.36 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.97 Total: -86.55 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.02 Total: -33.64 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 1.80 Total: 52.74 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -0.65 Total: -2.13 kcal Total: -71.17 2.43 -68.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159819249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.866 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds