Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46628 * 2 1 4 4 H 1.09002 * 109.47482 * 55.95986 * 3 2 1 5 5 C 1.50706 * 109.46985 * 175.95975 * 3 2 1 6 6 H 1.08000 * 119.99455 * 86.66753 * 5 3 2 7 7 C 1.37872 * 120.00038 * 266.67119 * 5 3 2 8 8 N 1.31515 * 119.99867 * 180.85203 * 7 5 3 9 9 Si 1.86796 * 120.00146 * 0.85446 * 7 5 3 10 10 H 1.48506 * 109.47177 * 265.74889 * 9 7 5 11 11 H 1.48501 * 109.47117 * 25.75084 * 9 7 5 12 12 H 1.48498 * 109.47470 * 145.74867 * 9 7 5 13 13 N 1.46495 * 109.47081 * 295.96024 * 3 2 1 14 14 C 1.34774 * 120.00438 * 85.00280 * 13 3 2 15 15 O 1.21599 * 119.99686 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00542 * 180.02562 * 14 13 3 17 17 C 1.40013 * 119.99942 * 184.56516 * 16 14 13 18 18 C 1.38847 * 120.47641 * 145.84286 * 17 16 14 19 19 N 1.31822 * 120.67533 * 179.97438 * 18 17 16 20 20 C 1.31950 * 121.77824 * 0.02562 * 19 18 17 21 21 Br 1.89106 * 119.54955 * 180.02562 * 20 19 18 22 22 C 1.38333 * 120.89866 * 0.02562 * 20 19 18 23 23 C 1.50704 * 120.39024 * 180.02562 * 22 20 19 24 24 C 1.38522 * 119.22504 * 359.69821 * 22 20 19 25 25 H 1.09002 * 109.47065 * 60.00350 * 1 2 3 26 26 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47115 * 299.99634 * 1 2 3 28 28 H 1.09000 * 109.47115 * 240.00366 * 2 1 3 29 29 H 1.09002 * 109.47065 * 119.99650 * 2 1 3 30 30 H 0.97000 * 120.00007 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00374 * 265.00237 * 13 3 2 32 32 H 0.96994 * 119.99987 * 4.55910 * 16 14 13 33 33 H 1.07999 * 119.66532 * 359.97438 * 18 17 16 34 34 H 1.08996 * 109.47335 * 89.99287 * 23 22 20 35 35 H 1.08997 * 109.46938 * 210.00252 * 23 22 20 36 36 H 1.09005 * 109.46572 * 329.99342 * 23 22 20 37 37 H 1.08006 * 120.81273 * 180.32165 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6187 1.9769 0.8516 5 6 3.5437 1.4438 0.1001 6 1 4.1444 1.3680 -0.7942 7 6 4.1524 1.5417 1.3333 8 7 5.4646 1.5597 1.4193 9 14 3.1134 1.6487 2.8819 10 1 2.9119 3.0744 3.2454 11 1 1.7955 1.0088 2.6390 12 1 3.8065 0.9479 3.9926 13 7 1.6326 2.1044 -1.2418 14 6 0.4137 2.6719 -1.3346 15 8 -0.3482 2.6340 -0.3877 16 7 0.0388 3.2804 -2.4772 17 6 -1.1879 3.9523 -2.5426 18 6 -1.3228 5.0982 -3.3149 19 7 -2.4759 5.7337 -3.3797 20 6 -3.5390 5.3132 -2.7208 21 35 -5.1624 6.2732 -2.8597 22 6 -3.4821 4.1798 -1.9298 23 6 -4.7035 3.7095 -1.1826 24 6 -2.2913 3.4782 -1.8379 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8929 1.6282 2.2869 31 1 2.2402 2.1344 -1.9974 32 1 0.6187 3.2529 -3.2542 33 1 -0.4743 5.4729 -3.8682 34 1 -5.2694 3.0198 -1.8088 35 1 -4.3968 3.2019 -0.2681 36 1 -5.3276 4.5669 -0.9304 37 1 -2.2195 2.5870 -1.2319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162295726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = -17.905760 kcal Electronic energy + Delta-G solvation = -21580.268324 eV Core-core repulsion = 18209.885898 eV Total energy + Delta-G solvation = -3370.382426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04927 -40.69563 -37.50724 -36.04595 -34.81822 -34.44372 -33.43556 -32.37934 -30.34056 -29.18387 -28.30846 -25.07473 -24.45728 -23.42822 -22.15995 -21.43655 -20.14071 -18.75553 -18.22790 -17.80603 -17.50984 -16.99901 -16.40526 -15.94821 -15.71018 -15.16945 -14.78694 -14.66842 -14.34839 -14.18129 -13.79823 -13.72702 -13.71207 -13.59611 -13.01798 -12.93412 -12.60932 -12.43821 -12.32606 -11.82988 -11.69776 -11.44745 -11.33368 -11.24217 -11.14185 -10.87079 -10.69983 -10.33949 -9.81997 -9.22784 -8.38462 -6.44533 -0.25139 0.10410 0.33598 1.29052 1.36242 1.46631 1.60524 2.06946 2.27948 2.58916 2.96592 3.29442 3.46545 3.72808 3.78939 3.85995 4.32863 4.35307 4.43799 4.48606 4.55545 4.71664 4.80066 4.86965 4.97040 5.08643 5.14308 5.21814 5.26492 5.28394 5.42767 5.57358 5.63329 5.75521 5.88344 6.26287 6.58260 6.62271 7.11492 7.22938 7.56968 8.76370 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.002689 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.458856 B =10409.124538 C =10598.518136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.125 4.125 3 C 0.261 3.739 4 H 0.032 0.968 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.246 1.246 12 H -0.279 1.279 13 N -0.709 5.709 14 C 0.695 3.305 15 O -0.607 6.607 16 N -0.669 5.669 17 C 0.141 3.859 18 C 0.076 3.924 19 N -0.454 5.454 20 C 0.074 3.926 21 Br 0.000 7.000 22 C -0.081 4.081 23 C -0.119 4.119 24 C -0.093 4.093 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.270 0.730 31 H 0.405 0.595 32 H 0.427 0.573 33 H 0.194 0.806 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.071 5.772 -11.021 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.165 4.165 3 C 0.157 3.843 4 H 0.050 0.950 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.169 1.169 12 H -0.205 1.205 13 N -0.361 5.361 14 C 0.396 3.604 15 O -0.487 6.487 16 N -0.319 5.319 17 C 0.041 3.959 18 C -0.087 4.087 19 N -0.163 5.163 20 C -0.142 4.142 21 Br 0.084 6.916 22 C -0.087 4.087 23 C -0.176 4.176 24 C -0.122 4.122 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.240 0.760 32 H 0.266 0.734 33 H 0.211 0.789 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.157 6.801 -10.572 25.474 hybrid contribution 1.353 -0.806 0.735 1.738 sum -20.804 5.995 -9.837 23.780 Atomic orbital electron populations 1.21746 0.95719 1.00166 1.01201 1.22028 0.95148 0.97963 1.01315 1.18801 0.92692 0.89842 0.82990 0.95046 1.21217 0.90213 1.50717 0.94204 0.92428 1.25581 0.95584 0.93772 1.01814 1.69977 1.10054 1.50796 1.26147 0.86114 0.80446 0.78757 0.79985 1.20558 1.16897 1.20471 1.45509 1.14054 1.58151 1.18398 1.16147 0.82951 0.78581 0.82739 1.90875 1.53620 1.65383 1.38830 1.42444 1.19483 1.55500 1.14469 1.18787 0.85588 0.92933 0.98547 1.22940 0.95883 0.90032 0.99857 1.67394 0.98809 1.30647 1.19414 1.22798 0.94269 0.96399 1.00765 1.96685 1.22619 1.74714 1.97555 1.20830 0.97467 0.93781 0.96573 1.21007 0.93488 1.03098 1.00034 1.21785 0.90134 1.00856 0.99401 0.93188 0.92696 0.94557 0.91898 0.93069 0.92107 0.76015 0.73362 0.78909 0.88477 0.90325 0.89554 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.49 71.98 0.61 -3.96 16 2 C -0.13 -4.90 5.34 30.60 0.16 -4.73 16 3 C 0.26 11.29 1.79 44.25 0.08 11.37 16 4 H 0.03 1.52 4.92 -2.39 -0.01 1.51 16 5 C -0.53 -26.83 9.05 25.60 0.23 -26.60 16 6 H 0.06 3.13 8.06 -2.91 -0.02 3.11 16 7 C 0.03 1.79 5.47 84.65 0.46 2.25 16 8 N -0.93 -54.14 13.96 21.45 0.30 -53.84 16 9 Si 0.92 42.87 26.62 68.60 1.83 44.70 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.25 -10.93 6.24 99.48 0.62 -10.31 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 N -0.71 -24.74 5.01 -461.40 -2.31 -27.05 16 14 C 0.70 22.91 6.95 179.06 1.24 24.16 16 15 O -0.61 -23.79 10.91 -4.03 -0.04 -23.83 16 16 N -0.67 -15.95 5.36 -316.84 -1.70 -17.65 16 17 C 0.14 3.49 6.33 38.22 0.24 3.73 16 18 C 0.08 1.67 11.12 84.84 0.94 2.61 16 19 N -0.45 -11.43 10.32 -190.26 -1.96 -13.39 16 20 C 0.07 1.81 7.16 84.70 0.61 2.41 16 21 Br 0.00 0.01 31.95 -20.37 -0.65 -0.64 16 22 C -0.08 -1.92 5.90 -19.77 -0.12 -2.04 16 23 C -0.12 -2.13 9.56 71.24 0.68 -1.45 16 24 C -0.09 -2.47 8.49 22.58 0.19 -2.27 16 25 H 0.05 1.70 5.67 -2.39 -0.01 1.69 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.37 7.79 -2.39 -0.02 1.35 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.09 7.44 -2.39 -0.02 2.08 16 30 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.40 12.06 8.61 -92.71 -0.80 11.26 16 32 H 0.43 6.91 8.84 -92.71 -0.82 6.09 16 33 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.09 1.41 6.65 -2.38 -0.02 1.39 16 37 H 0.15 4.43 6.28 -2.91 -0.02 4.41 16 Total: -1.00 -64.62 323.38 0.22 -64.40 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.57 Total: 21.83 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.34 Total: 5.48 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -5.68 Total: -111.93 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.83 Total: 44.70 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.65 Total: -0.64 kcal Total: -64.62 0.22 -64.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162295726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.494 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds