Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 H 1.09001 * 109.47486 * 305.00496 * 3 2 1 5 5 C 1.50699 * 109.46903 * 185.00079 * 3 2 1 6 6 H 1.08001 * 119.99823 * 240.00538 * 5 3 2 7 7 C 1.37877 * 120.00132 * 60.00075 * 5 3 2 8 8 N 1.31513 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00242 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46950 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47143 * 119.99981 * 9 7 5 12 12 H 1.48499 * 109.47255 * 240.00645 * 9 7 5 13 13 N 1.46500 * 109.46676 * 65.00383 * 3 2 1 14 14 C 1.34782 * 119.99917 * 274.99154 * 13 3 2 15 15 O 1.21588 * 119.99788 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99614 * 180.02562 * 14 13 3 17 17 C 1.40014 * 119.99694 * 174.70434 * 16 14 13 18 18 C 1.38844 * 120.47878 * 147.44973 * 17 16 14 19 19 N 1.31817 * 120.67603 * 179.97438 * 18 17 16 20 20 C 1.31945 * 121.78067 * 0.02562 * 19 18 17 21 21 Br 1.89104 * 119.55198 * 180.02562 * 20 19 18 22 22 C 1.38339 * 120.89603 * 359.97438 * 20 19 18 23 23 C 1.50701 * 120.38472 * 180.02562 * 22 20 19 24 24 C 1.38510 * 119.22994 * 359.76364 * 22 20 19 25 25 H 1.09004 * 109.47511 * 59.99775 * 1 2 3 26 26 H 1.08998 * 109.47035 * 299.99996 * 1 2 3 27 27 H 1.09001 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47109 * 120.00471 * 2 1 3 29 29 H 1.09001 * 109.46835 * 240.00495 * 2 1 3 30 30 H 0.96993 * 120.00183 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99909 * 95.00174 * 13 3 2 32 32 H 0.96994 * 120.00257 * 354.70336 * 16 14 13 33 33 H 1.07995 * 119.66237 * 359.97438 * 18 17 16 34 34 H 1.09007 * 109.46791 * 89.99797 * 23 22 20 35 35 H 1.09000 * 109.47054 * 209.99883 * 23 22 20 36 36 H 1.09002 * 109.47127 * 330.00157 * 23 22 20 37 37 H 1.07993 * 120.81847 * 180.25854 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1943 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6169 -2.6102 13 7 1.6524 2.0973 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3415 2.6319 0.4321 16 7 0.0788 3.2672 2.5186 17 6 -1.1397 3.9518 2.6025 18 6 -1.8444 3.9914 3.7981 19 7 -2.9916 4.6352 3.8816 20 6 -3.5138 5.2619 2.8446 21 35 -5.1634 6.1666 3.0353 22 6 -2.8704 5.2671 1.6199 23 6 -3.4770 5.9871 0.4432 24 6 -1.6595 4.6074 1.4893 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1230 1.9978 32 1 0.6664 3.2268 3.2892 33 1 -1.4485 3.4897 4.6687 34 1 -3.1228 7.0179 0.4260 35 1 -3.1836 5.4867 -0.4796 36 1 -4.5634 5.9777 0.5321 37 1 -1.1332 4.5985 0.5463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162295851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = 2.036499 kcal Electronic energy + Delta-G solvation = -21456.024833 eV Core-core repulsion = 18086.507168 eV Total energy + Delta-G solvation = -3369.517665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85251 -39.33733 -35.88355 -34.62358 -33.81432 -32.65927 -31.74266 -30.86953 -29.13157 -27.40603 -26.90769 -23.79355 -23.11978 -22.18399 -20.73507 -19.67269 -18.54043 -17.33959 -16.82305 -16.43563 -16.02339 -15.19213 -14.93988 -14.62421 -14.27289 -13.70856 -13.50987 -13.15783 -12.98048 -12.77100 -12.71071 -12.51707 -12.01020 -11.69497 -11.34498 -11.28853 -11.03382 -10.92229 -10.45119 -10.37967 -10.37080 -10.27106 -9.93637 -9.70936 -9.55521 -9.22972 -9.12742 -8.60087 -8.27484 -7.90963 -6.21037 -4.30838 0.79859 1.15155 1.32379 2.91200 3.18127 3.26808 3.28855 3.38099 3.79183 4.23903 4.34648 4.63709 4.70460 4.82625 4.97613 5.11191 5.25060 5.44651 5.49845 5.81609 5.97458 6.00688 6.22125 6.32917 6.39194 6.57251 6.72796 6.84444 7.00519 7.21387 7.24910 7.32243 7.55680 7.60019 7.74565 7.84283 8.08853 8.58862 8.71063 9.05667 9.37001 10.84322 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.002409 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.410550 B =11621.603326 C =11693.104640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.690 5.690 17 C 0.159 3.841 18 C 0.064 3.936 19 N -0.437 5.437 20 C 0.085 3.915 21 Br -0.018 7.018 22 C -0.077 4.077 23 C -0.121 4.121 24 C -0.080 4.080 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.407 0.593 33 H 0.164 0.836 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 10.617 10.623 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.364 5.364 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.338 5.338 17 C 0.058 3.942 18 C -0.099 4.099 19 N -0.146 5.146 20 C -0.132 4.132 21 Br 0.065 6.935 22 C -0.082 4.082 23 C -0.178 4.178 24 C -0.109 4.109 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.243 0.757 33 H 0.181 0.819 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.335 10.756 10.359 20.700 hybrid contribution 2.454 -0.459 -0.068 2.498 sum -11.881 10.298 10.290 18.791 Atomic orbital electron populations 1.21819 0.98253 0.98049 1.01190 1.21969 0.92675 0.99795 1.02375 1.18776 0.94168 0.88941 0.79685 0.93112 1.21232 0.90508 1.39263 1.06421 0.91993 1.24876 0.98701 0.94707 0.95333 1.69895 1.35129 1.37443 1.09302 0.86384 0.84675 0.77833 0.78154 1.19749 1.20832 1.20837 1.45887 1.12736 1.58349 1.19450 1.16136 0.83791 0.78799 0.82117 1.90919 1.51621 1.64377 1.38077 1.42906 1.19577 1.55707 1.15626 1.18662 0.87486 0.92511 0.95491 1.22471 0.90463 0.99816 0.97130 1.67283 1.10652 1.06439 1.30205 1.22440 0.95800 1.03372 0.91610 1.96671 1.24028 1.74558 1.98193 1.20579 0.94748 0.97917 0.94971 1.20951 1.01544 1.00144 0.95177 1.21655 0.95212 0.93765 1.00235 0.93120 0.94424 0.95875 0.95000 0.88154 0.92501 0.78029 0.75729 0.81922 0.90153 0.90243 0.90270 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.29 6.74 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.38 8.73 -34.44 -0.30 -13.68 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.72 11.29 55.43 0.63 -23.10 16 9 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -13.40 5.03 -59.81 -0.30 -13.70 16 14 C 0.69 12.44 6.90 -86.91 -0.60 11.84 16 15 O -0.57 -12.21 11.18 5.29 0.06 -12.15 16 16 N -0.69 -9.26 5.36 -14.12 -0.08 -9.34 16 17 C 0.16 2.18 6.31 -83.52 -0.53 1.65 16 18 C 0.06 0.80 11.12 -17.33 -0.19 0.60 16 19 N -0.44 -6.03 10.32 -11.49 -0.12 -6.15 16 20 C 0.09 1.14 7.16 -17.47 -0.13 1.01 16 21 Br -0.02 -0.20 31.95 -68.01 -2.17 -2.38 16 22 C -0.08 -1.01 5.90 -104.48 -0.62 -1.62 16 23 C -0.12 -1.25 9.56 36.01 0.34 -0.91 16 24 C -0.08 -1.16 8.45 -39.10 -0.33 -1.49 16 25 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 26 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.39 6.16 8.56 -40.82 -0.35 5.81 16 32 H 0.41 3.97 8.84 -40.82 -0.36 3.61 16 33 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.08 0.75 6.65 -51.93 -0.35 0.41 16 37 H 0.16 2.57 6.48 -52.49 -0.34 2.23 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -29.16 325.77 -8.97 -38.13 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.45 Total: 9.08 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.43 Total: -0.13 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.13 Total: -52.28 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.06 Total: -12.15 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.17 Total: -2.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.16 -8.97 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162295851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.169 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds