Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 H 1.09001 * 109.47486 * 305.00496 * 3 2 1 5 5 C 1.50699 * 109.46903 * 185.00079 * 3 2 1 6 6 H 1.08001 * 119.99823 * 240.00538 * 5 3 2 7 7 C 1.37877 * 120.00132 * 60.00075 * 5 3 2 8 8 N 1.31513 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00242 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46950 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47143 * 119.99981 * 9 7 5 12 12 H 1.48499 * 109.47255 * 240.00645 * 9 7 5 13 13 N 1.46500 * 109.46676 * 65.00383 * 3 2 1 14 14 C 1.34782 * 119.99917 * 274.99154 * 13 3 2 15 15 O 1.21588 * 119.99788 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99614 * 180.02562 * 14 13 3 17 17 C 1.40014 * 119.99694 * 174.70434 * 16 14 13 18 18 C 1.38844 * 120.47878 * 147.44973 * 17 16 14 19 19 N 1.31817 * 120.67603 * 179.97438 * 18 17 16 20 20 C 1.31945 * 121.78067 * 0.02562 * 19 18 17 21 21 Br 1.89104 * 119.55198 * 180.02562 * 20 19 18 22 22 C 1.38339 * 120.89603 * 359.97438 * 20 19 18 23 23 C 1.50701 * 120.38472 * 180.02562 * 22 20 19 24 24 C 1.38510 * 119.22994 * 359.76364 * 22 20 19 25 25 H 1.09004 * 109.47511 * 59.99775 * 1 2 3 26 26 H 1.08998 * 109.47035 * 299.99996 * 1 2 3 27 27 H 1.09001 * 109.47446 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47109 * 120.00471 * 2 1 3 29 29 H 1.09001 * 109.46835 * 240.00495 * 2 1 3 30 30 H 0.96993 * 120.00183 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99909 * 95.00174 * 13 3 2 32 32 H 0.96994 * 120.00257 * 354.70336 * 16 14 13 33 33 H 1.07995 * 119.66237 * 359.97438 * 18 17 16 34 34 H 1.09007 * 109.46791 * 89.99797 * 23 22 20 35 35 H 1.09000 * 109.47054 * 209.99883 * 23 22 20 36 36 H 1.09002 * 109.47127 * 330.00157 * 23 22 20 37 37 H 1.07993 * 120.81847 * 180.25854 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1943 11 1 6.4970 -0.5174 -1.4631 12 1 6.3989 1.6169 -2.6102 13 7 1.6524 2.0973 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3415 2.6319 0.4321 16 7 0.0788 3.2672 2.5186 17 6 -1.1397 3.9518 2.6025 18 6 -1.8444 3.9914 3.7981 19 7 -2.9916 4.6352 3.8816 20 6 -3.5138 5.2619 2.8446 21 35 -5.1634 6.1666 3.0353 22 6 -2.8704 5.2671 1.6199 23 6 -3.4770 5.9871 0.4432 24 6 -1.6595 4.6074 1.4893 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1230 1.9978 32 1 0.6664 3.2268 3.2892 33 1 -1.4485 3.4897 4.6687 34 1 -3.1228 7.0179 0.4260 35 1 -3.1836 5.4867 -0.4796 36 1 -4.5634 5.9777 0.5321 37 1 -1.1332 4.5985 0.5463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162295851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = -16.983743 kcal Electronic energy + Delta-G solvation = -21456.849612 eV Core-core repulsion = 18086.507168 eV Total energy + Delta-G solvation = -3370.342445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02500 -40.65756 -37.44292 -36.04746 -34.82535 -34.39159 -33.12637 -32.32236 -30.30484 -28.75606 -28.30498 -25.25332 -24.59089 -23.37156 -22.14206 -21.39546 -19.98016 -18.66777 -17.95709 -17.67267 -17.57702 -16.85257 -16.38072 -15.96930 -15.66372 -15.12605 -14.67971 -14.53920 -14.27450 -14.20804 -13.77275 -13.62011 -13.54211 -13.18154 -13.00189 -12.85277 -12.71067 -12.42217 -12.16496 -12.06495 -11.59991 -11.46353 -11.34758 -11.24248 -11.02641 -10.72781 -10.53983 -10.32785 -9.74963 -9.20070 -8.15663 -6.32202 -0.24599 0.09260 0.33648 1.45189 1.46767 1.57085 1.65748 2.09877 2.42376 2.61116 3.14571 3.29869 3.46923 3.72071 3.78001 3.85419 4.32299 4.47409 4.50771 4.58131 4.70081 4.74210 4.83420 4.94538 5.06206 5.08373 5.22106 5.25491 5.44128 5.52683 5.61175 5.62371 5.72241 5.85963 6.16863 6.20662 6.58132 6.75946 7.19004 7.35816 7.64820 8.89827 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.002409 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.410550 B =11621.603326 C =11693.104640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.003 0.997 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.710 5.710 14 C 0.693 3.307 15 O -0.608 6.608 16 N -0.669 5.669 17 C 0.146 3.854 18 C 0.077 3.923 19 N -0.450 5.450 20 C 0.074 3.926 21 Br 0.002 6.998 22 C -0.080 4.080 23 C -0.120 4.120 24 C -0.097 4.097 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.427 0.573 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 11.099 12.675 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.362 5.362 14 C 0.394 3.606 15 O -0.488 6.488 16 N -0.319 5.319 17 C 0.046 3.954 18 C -0.086 4.086 19 N -0.159 5.159 20 C -0.142 4.142 21 Br 0.086 6.914 22 C -0.085 4.085 23 C -0.177 4.177 24 C -0.126 4.126 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.267 0.733 33 H 0.215 0.785 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.159 11.273 12.485 21.987 hybrid contribution 2.286 -0.533 -0.685 2.445 sum -11.874 10.740 11.801 19.889 Atomic orbital electron populations 1.21645 0.97081 0.98875 1.00186 1.21816 0.93592 0.99345 1.01373 1.18292 0.93444 0.88788 0.80153 0.97910 1.21582 0.91321 1.38806 1.06647 0.90883 1.25714 1.03028 0.94463 0.95114 1.70043 1.36910 1.38380 1.09856 0.85358 0.79440 0.77718 0.78171 1.18414 1.20665 1.21211 1.45454 1.13613 1.58565 1.18604 1.16162 0.83072 0.78611 0.82783 1.90909 1.52539 1.65515 1.39826 1.42477 1.19905 1.54684 1.14807 1.18786 0.87678 0.92951 0.95989 1.22930 0.89606 0.98691 0.97401 1.67390 1.11194 1.06937 1.30396 1.22745 0.96592 1.03286 0.91597 1.96680 1.22540 1.74039 1.98150 1.20780 0.94214 0.97632 0.95859 1.21010 1.01979 1.00695 0.94009 1.21603 0.96071 0.95045 0.99856 0.95502 0.93961 0.94001 0.93969 0.90979 0.92622 0.76098 0.73335 0.78545 0.88524 0.90623 0.89320 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.51 71.98 0.61 -4.63 16 2 C -0.12 -5.73 5.45 30.60 0.17 -5.56 16 3 C 0.30 14.23 2.24 44.24 0.10 14.33 16 4 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 5 C -0.55 -27.19 8.73 25.60 0.22 -26.96 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -50.39 11.29 21.45 0.24 -50.14 16 9 Si 0.97 40.48 29.54 68.60 2.03 42.51 16 10 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 13 N -0.71 -26.34 5.03 -461.40 -2.32 -28.66 16 14 C 0.69 24.77 6.90 179.05 1.23 26.00 16 15 O -0.61 -26.56 11.18 -3.99 -0.04 -26.60 16 16 N -0.67 -16.97 5.36 -316.83 -1.70 -18.67 16 17 C 0.15 3.82 6.31 38.22 0.24 4.06 16 18 C 0.08 1.72 11.12 84.84 0.94 2.66 16 19 N -0.45 -11.52 10.32 -190.27 -1.96 -13.49 16 20 C 0.07 1.88 7.16 84.70 0.61 2.49 16 21 Br 0.00 0.04 31.95 -20.37 -0.65 -0.61 16 22 C -0.08 -2.03 5.90 -19.78 -0.12 -2.15 16 23 C -0.12 -2.40 9.56 71.24 0.68 -1.72 16 24 C -0.10 -2.81 8.45 22.58 0.19 -2.62 16 25 H 0.03 1.26 7.84 -2.38 -0.02 1.24 16 26 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 30 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.40 12.20 8.56 -92.71 -0.79 11.41 16 32 H 0.43 7.24 8.84 -92.71 -0.82 6.42 16 33 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.09 1.58 6.65 -2.39 -0.02 1.57 16 37 H 0.14 4.63 6.48 -2.91 -0.02 4.61 16 Total: -1.00 -63.76 325.77 0.44 -63.33 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.49 Total: 25.12 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.33 Total: 7.22 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.74 Total: -110.96 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.04 Total: -26.60 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.65 Total: -0.61 kcal Total: -63.76 0.44 -63.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162295851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.342 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds