Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38266 * 119.97343 * 90.00461 * 16 13 12 18 18 C 1.38180 * 120.02974 * 179.97438 * 17 16 13 19 19 C 1.38479 * 119.96657 * 359.97438 * 18 17 16 20 20 F 1.35108 * 120.02165 * 179.97438 * 19 18 17 21 21 C 1.38443 * 119.95595 * 0.02562 * 19 18 17 22 22 C 1.50701 * 120.01473 * 180.02562 * 21 19 18 23 23 F 1.39898 * 109.46828 * 179.97438 * 22 21 19 24 24 F 1.39901 * 109.46938 * 299.99656 * 22 21 19 25 25 F 1.39895 * 109.47013 * 59.99754 * 22 21 19 26 26 C 1.38217 * 119.97438 * 269.72373 * 16 13 12 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 32 32 H 1.08001 * 119.98847 * 359.97438 * 17 16 13 33 33 H 1.07995 * 120.01642 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.99007 * 359.97438 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 5.0781 0.7152 -2.3183 18 6 6.1617 1.5094 -1.9949 19 6 5.9596 2.7828 -1.4896 20 9 7.0182 3.5601 -1.1725 21 6 4.6721 3.2583 -1.3085 22 6 4.4506 4.6441 -0.7591 23 9 3.0774 4.8957 -0.6682 24 9 5.0279 4.7397 0.5116 25 9 5.0409 5.5834 -1.6114 26 6 3.5899 2.4637 -1.6372 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1611 3.4845 31 1 2.1109 -1.6561 -1.1950 32 1 5.2355 -0.2778 -2.7129 33 1 7.1656 1.1373 -2.1362 34 1 2.5854 2.8363 -1.5006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171092645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = -244.564020 kcal Electronic energy + Delta-G solvation = -28604.466831 eV Core-core repulsion = 23743.117361 eV Total energy + Delta-G solvation = -4861.349470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.26508 -49.41122 -47.68302 -47.64106 -39.36624 -36.94931 -35.58351 -35.50488 -32.46676 -32.30612 -31.21453 -28.39780 -26.30978 -25.30045 -23.63924 -22.70439 -21.07386 -19.65796 -18.65344 -18.55632 -18.48598 -17.81189 -17.37633 -16.77146 -16.50098 -16.25058 -16.05351 -15.33448 -14.77130 -14.68199 -14.51610 -14.38881 -14.06433 -13.81692 -13.78453 -13.76844 -13.59543 -13.56758 -12.94295 -12.79172 -12.72942 -12.31065 -11.84793 -11.80833 -11.73053 -11.52632 -11.24562 -11.06092 -10.94625 -10.65302 -10.38214 -10.21012 -9.73108 -9.46103 -9.30173 -8.74092 -8.42984 -6.21873 -4.31110 0.23803 0.65311 0.80602 2.49343 2.78277 3.19202 3.27023 3.27934 3.49445 3.52264 3.58039 3.89795 4.05880 4.27432 4.31270 4.35099 4.53780 4.76781 4.98719 5.10137 5.18240 5.36521 5.48170 5.62605 5.71947 6.16248 6.26964 6.71447 6.95285 6.99233 7.47150 7.59665 7.67687 7.93799 8.15939 8.71863 9.36216 10.83537 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.009830 B = 0.005495 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.680293 B = 5094.557294 C = 6309.354948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.273 3.727 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -1.095 6.095 13 S 2.691 3.309 14 O -0.974 6.974 15 O -0.953 6.953 16 C -0.683 4.683 17 C 0.042 3.958 18 C -0.178 4.178 19 C 0.198 3.802 20 F -0.119 7.119 21 C -0.244 4.244 22 C 0.516 3.484 23 F -0.165 7.165 24 F -0.169 7.169 25 F -0.175 7.175 26 C 0.064 3.936 27 H 0.034 0.966 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.266 0.734 31 H 0.412 0.588 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 3.289 -8.060 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.169 3.831 3 H 0.057 0.943 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.857 5.857 13 S 2.776 3.224 14 O -0.965 6.965 15 O -0.943 6.943 16 C -0.766 4.766 17 C 0.023 3.977 18 C -0.197 4.197 19 C 0.178 3.822 20 F -0.097 7.097 21 C -0.247 4.247 22 C 0.461 3.539 23 F -0.147 7.147 24 F -0.151 7.151 25 F -0.157 7.157 26 C 0.045 3.955 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.247 0.753 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.222 3.701 -8.682 12.517 hybrid contribution 1.172 -0.098 1.686 2.055 sum 9.394 3.603 -6.997 12.255 Atomic orbital electron populations 1.22246 0.97778 1.00157 1.01668 1.18587 0.91700 0.91992 0.80799 0.94305 1.21254 1.32414 1.13415 0.89893 0.91672 1.24916 0.94770 0.94950 0.99101 1.69863 1.35730 1.22350 1.24129 0.86486 0.79240 0.79377 0.82257 1.20450 1.19860 1.21077 1.55578 1.80257 1.18564 1.31304 1.02062 0.73628 0.73493 0.73198 1.93541 1.82392 1.61257 1.59262 1.93596 1.49624 1.66999 1.84115 1.31496 1.18126 1.10285 1.16736 1.21018 0.89829 0.99065 0.87803 1.21240 1.01657 0.92543 1.04251 1.17499 0.82048 0.89335 0.93364 1.91596 1.54677 1.73933 1.89473 1.20151 0.94732 0.96301 1.13510 1.17893 0.74584 0.85342 0.76061 1.93229 1.30511 1.94877 1.96037 1.93253 1.84396 1.96636 1.40777 1.93220 1.84016 1.67834 1.70585 1.20785 0.99394 0.90293 0.85051 0.94720 0.88866 0.95441 0.92407 0.75336 0.82286 0.82630 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.29 37.16 0.35 -3.25 16 2 C 0.27 6.08 2.76 -69.09 -0.19 5.89 16 3 H 0.04 0.90 7.24 -51.93 -0.38 0.53 16 4 C -0.53 -12.91 8.76 -34.44 -0.30 -13.22 16 5 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -23.21 11.32 55.43 0.63 -22.58 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 N -1.09 -19.80 5.46 -5.88 -0.03 -19.83 16 13 S 2.69 44.91 5.65 -107.50 -0.61 44.31 16 14 O -0.97 -16.64 17.28 -57.17 -0.99 -17.63 16 15 O -0.95 -18.31 16.53 -57.17 -0.95 -19.25 16 16 C -0.68 -10.31 5.82 -39.58 -0.23 -10.54 16 17 C 0.04 0.52 9.52 -39.59 -0.38 0.14 16 18 C -0.18 -2.02 10.03 -39.51 -0.40 -2.42 16 19 C 0.20 2.65 7.13 -39.42 -0.28 2.37 16 20 F -0.12 -1.56 16.47 2.25 0.04 -1.52 16 21 C -0.24 -3.65 5.38 -104.55 -0.56 -4.21 16 22 C 0.52 7.75 3.03 36.01 0.11 7.86 16 23 F -0.17 -2.58 15.97 2.25 0.04 -2.54 16 24 F -0.17 -2.67 17.05 2.25 0.04 -2.63 16 25 F -0.18 -2.47 17.06 2.25 0.04 -2.43 16 26 C 0.06 1.00 8.30 -39.59 -0.33 0.67 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 29 H 0.03 0.58 7.64 -51.93 -0.40 0.18 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.41 6.64 8.83 -34.48 -0.30 6.33 16 32 H 0.16 1.58 7.62 -52.49 -0.40 1.18 16 33 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.17 2.62 6.71 -52.49 -0.35 2.27 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -28.90 325.39 -6.75 -35.66 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.53 Total: 3.91 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -2.31 Total: -15.12 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.60 Total: -42.41 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.93 Total: -36.88 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 0.15 Total: -9.13 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 44.91 SS G_CDS: -0.61 Total: 44.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.90 -6.75 -35.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.906 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds