Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38266 * 119.97343 * 90.00461 * 16 13 12 18 18 C 1.38180 * 120.02974 * 179.97438 * 17 16 13 19 19 C 1.38479 * 119.96657 * 359.97438 * 18 17 16 20 20 F 1.35108 * 120.02165 * 179.97438 * 19 18 17 21 21 C 1.38443 * 119.95595 * 0.02562 * 19 18 17 22 22 C 1.50701 * 120.01473 * 180.02562 * 21 19 18 23 23 F 1.39898 * 109.46828 * 179.97438 * 22 21 19 24 24 F 1.39901 * 109.46938 * 299.99656 * 22 21 19 25 25 F 1.39895 * 109.47013 * 59.99754 * 22 21 19 26 26 C 1.38217 * 119.97438 * 269.72373 * 16 13 12 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 32 32 H 1.08001 * 119.98847 * 359.97438 * 17 16 13 33 33 H 1.07995 * 120.01642 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.99007 * 359.97438 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 5.0781 0.7152 -2.3183 18 6 6.1617 1.5094 -1.9949 19 6 5.9596 2.7828 -1.4896 20 9 7.0182 3.5601 -1.1725 21 6 4.6721 3.2583 -1.3085 22 6 4.4506 4.6441 -0.7591 23 9 3.0774 4.8957 -0.6682 24 9 5.0279 4.7397 0.5116 25 9 5.0409 5.5834 -1.6114 26 6 3.5899 2.4637 -1.6372 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1611 3.4845 31 1 2.1109 -1.6561 -1.1950 32 1 5.2355 -0.2778 -2.7129 33 1 7.1656 1.1373 -2.1362 34 1 2.5854 2.8363 -1.5006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171092645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = -263.038356 kcal Electronic energy + Delta-G solvation = -28605.267939 eV Core-core repulsion = 23743.117361 eV Total energy + Delta-G solvation = -4862.150578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.45838 -50.46277 -48.88611 -48.85968 -40.43982 -38.36573 -37.24847 -36.94198 -34.11031 -33.54306 -32.29981 -30.12257 -27.44896 -27.20383 -24.74097 -23.82292 -22.82608 -20.91579 -19.93144 -19.75750 -19.70220 -19.18940 -18.65578 -17.99197 -17.80567 -17.68752 -17.11396 -17.02942 -16.25058 -15.86616 -15.72065 -15.52703 -15.30283 -15.28015 -15.00630 -14.98822 -14.73891 -14.68435 -14.51645 -14.05802 -14.02088 -13.92299 -13.49998 -13.27241 -13.14109 -12.98419 -12.81624 -12.60393 -12.37489 -12.25719 -12.17692 -11.98676 -11.09603 -10.79858 -10.60994 -10.49152 -10.11985 -8.12092 -6.26094 -0.87045 -0.54995 -0.39305 1.32457 1.46093 1.48628 1.56324 1.69877 2.14493 2.34246 2.46462 2.51254 2.71319 2.77720 3.12187 3.18569 3.26403 3.36703 3.72996 3.90242 4.08308 4.36824 4.38664 4.51056 4.61301 4.66676 4.93366 5.13423 5.19160 5.27967 5.61575 5.76484 6.06353 6.09596 6.43520 6.85485 7.44057 8.92717 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.009830 B = 0.005495 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.680293 B = 5094.557294 C = 6309.354948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.276 3.724 3 H 0.026 0.974 4 C -0.536 4.536 5 H 0.073 0.927 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.291 1.291 12 N -1.095 6.095 13 S 2.710 3.290 14 O -0.974 6.974 15 O -0.984 6.984 16 C -0.693 4.693 17 C 0.045 3.955 18 C -0.158 4.158 19 C 0.194 3.806 20 F -0.116 7.116 21 C -0.257 4.257 22 C 0.514 3.486 23 F -0.173 7.173 24 F -0.175 7.175 25 F -0.170 7.170 26 C 0.046 3.954 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.421 0.579 32 H 0.191 0.809 33 H 0.200 0.800 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.859 1.920 -8.568 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.576 4.576 5 H 0.092 0.908 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.189 1.189 11 H -0.217 1.217 12 N -0.856 5.856 13 S 2.799 3.201 14 O -0.964 6.964 15 O -0.974 6.974 16 C -0.779 4.779 17 C 0.027 3.973 18 C -0.177 4.177 19 C 0.174 3.826 20 F -0.094 7.094 21 C -0.260 4.260 22 C 0.460 3.540 23 F -0.154 7.154 24 F -0.157 7.157 25 F -0.151 7.151 26 C 0.026 3.974 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.257 0.743 32 H 0.208 0.792 33 H 0.217 0.783 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.391 2.292 -9.211 14.073 hybrid contribution 0.556 0.364 1.774 1.894 sum 10.947 2.657 -7.437 13.498 Atomic orbital electron populations 1.22163 0.98407 1.00166 1.00715 1.18295 0.91254 0.91591 0.81766 0.95615 1.21609 1.31908 1.13452 0.90585 0.90843 1.25636 0.95139 0.95602 1.01766 1.69992 1.37022 1.23709 1.24406 0.85602 0.79046 0.78201 0.79061 1.20219 1.18887 1.21662 1.55354 1.80764 1.19219 1.30287 1.01253 0.73443 0.72955 0.72476 1.93537 1.82434 1.61508 1.58924 1.93557 1.51753 1.67607 1.84472 1.31174 1.18637 1.09774 1.18301 1.21467 0.88738 1.00393 0.86741 1.21700 1.03374 0.90950 1.01626 1.17705 0.81410 0.90162 0.93341 1.91605 1.54318 1.74073 1.89434 1.20173 0.95494 0.96041 1.14276 1.17981 0.74238 0.85850 0.75932 1.93212 1.31176 1.94970 1.96071 1.93236 1.84448 1.96708 1.41270 1.93224 1.83857 1.67714 1.70325 1.20720 0.99259 0.91053 0.86334 0.94148 0.91212 0.94992 0.92691 0.74269 0.79227 0.78251 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.09 9.29 71.98 0.67 -6.42 16 2 C 0.28 12.30 2.76 44.24 0.12 12.42 16 3 H 0.03 1.23 7.24 -2.39 -0.02 1.21 16 4 C -0.54 -25.74 8.76 25.60 0.22 -25.51 16 5 H 0.07 3.33 7.81 -2.91 -0.02 3.30 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -48.65 11.32 21.45 0.24 -48.41 16 8 Si 0.95 40.09 29.54 68.60 2.03 42.12 16 9 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 N -1.09 -38.59 5.46 -172.53 -0.94 -39.53 16 13 S 2.71 87.93 5.65 -56.49 -0.32 87.61 16 14 O -0.97 -31.22 17.28 -128.00 -2.21 -33.43 16 15 O -0.98 -38.04 16.53 -128.00 -2.12 -40.16 16 16 C -0.69 -19.96 5.82 22.27 0.13 -19.83 16 17 C 0.05 0.98 9.52 22.26 0.21 1.19 16 18 C -0.16 -2.96 10.03 22.31 0.22 -2.74 16 19 C 0.19 4.75 7.13 22.38 0.16 4.91 16 20 F -0.12 -2.78 16.47 44.97 0.74 -2.04 16 21 C -0.26 -7.51 5.38 -19.82 -0.11 -7.62 16 22 C 0.51 15.48 3.03 71.24 0.22 15.70 16 23 F -0.17 -5.57 15.97 44.97 0.72 -4.85 16 24 F -0.18 -5.52 17.05 44.97 0.77 -4.75 16 25 F -0.17 -4.73 17.06 44.97 0.77 -3.96 16 26 C 0.05 1.43 8.30 22.26 0.18 1.62 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 29 H 0.03 1.38 7.64 -2.38 -0.02 1.36 16 30 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 31 H 0.42 12.95 8.83 -96.74 -0.85 12.10 16 32 H 0.19 2.88 7.62 -2.91 -0.02 2.86 16 33 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.15 5.09 6.71 -2.91 -0.02 5.07 16 Total: -1.00 -61.19 325.39 2.49 -58.70 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.34 Total: 13.58 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 2.48 Total: -24.87 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -0.70 Total: -87.94 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -4.33 Total: -73.59 kcal Atomic # 9 Polarization: -18.60 SS G_CDS: 2.99 Total: -15.61 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 87.93 SS G_CDS: -0.32 Total: 87.61 kcal Total: -61.19 2.49 -58.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.340 kcal (2) G-P(sol) polarization free energy of solvation -61.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds