Wall clock time and date at job start Sat Apr 11 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99753 * 275.00143 * 10 9 7 12 12 C 1.52998 * 109.47247 * 84.99906 * 11 10 9 13 13 F 1.39904 * 109.47220 * 59.99500 * 12 11 10 14 14 F 1.39902 * 109.47469 * 179.97438 * 12 11 10 15 15 F 1.39897 * 109.47209 * 299.99698 * 12 11 10 16 16 S 1.65602 * 120.00006 * 94.99495 * 10 9 7 17 17 O 1.42097 * 106.40599 * 203.54158 * 16 10 9 18 18 O 1.42097 * 106.40158 * 336.46648 * 16 10 9 19 19 C 1.76208 * 107.21383 * 90.00215 * 16 10 9 20 20 C 1.38221 * 120.00733 * 115.00161 * 19 16 10 21 21 C 1.38231 * 120.02036 * 179.97438 * 20 19 16 22 22 C 1.38265 * 120.05216 * 0.02562 * 21 20 19 23 23 C 1.38177 * 120.02485 * 0.02562 * 22 21 20 24 24 C 1.38434 * 120.01621 * 294.72590 * 19 16 10 25 25 F 1.35111 * 120.02175 * 359.97438 * 24 19 16 26 26 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 28 28 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 29 29 H 1.09002 * 109.46665 * 204.99493 * 11 10 9 30 30 H 1.08998 * 109.47564 * 324.99734 * 11 10 9 31 31 H 1.07996 * 119.99309 * 359.97438 * 20 19 16 32 32 H 1.08004 * 119.97046 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.98636 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00968 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7630 -4.0976 -1.2634 12 6 3.9795 -3.2498 -1.6407 13 9 4.9464 -3.3475 -0.6343 14 9 4.5147 -3.7132 -2.8474 15 9 3.5902 -1.9139 -1.7853 16 16 2.6462 -4.3232 1.4292 17 8 3.9104 -4.9303 1.2004 18 8 2.4210 -3.3557 2.4453 19 6 1.5112 -5.6366 1.7325 20 6 1.9550 -6.9456 1.7411 21 6 1.0650 -7.9760 1.9796 22 6 -0.2699 -7.6987 2.2092 23 6 -0.7160 -6.3910 2.2000 24 6 0.1759 -5.3574 1.9680 25 9 -0.2578 -4.0778 1.9658 26 1 -0.4849 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 3.0664 -5.1384 -1.1507 30 1 2.0098 -4.0215 -2.0475 31 1 2.9974 -7.1634 1.5615 32 1 1.4128 -8.9985 1.9865 33 1 -0.9644 -8.5047 2.3949 34 1 -1.7588 -6.1747 2.3790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173976507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:17 Heat of formation + Delta-G solvation = -226.555706 kcal Electronic energy + Delta-G solvation = -29523.815241 eV Core-core repulsion = 24663.246670 eV Total energy + Delta-G solvation = -4860.568571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.36271 -49.04028 -46.96512 -46.69531 -39.02361 -36.80073 -36.07371 -35.36598 -32.57098 -31.55714 -30.66249 -29.18794 -26.38373 -23.63192 -23.11352 -22.92476 -22.16863 -18.99160 -18.33452 -17.96601 -17.77589 -17.35920 -16.92910 -16.50758 -16.41174 -16.16823 -15.57110 -15.25362 -15.02115 -14.46500 -14.29656 -13.90173 -13.70958 -13.47945 -13.45054 -13.26149 -12.94158 -12.88063 -12.77674 -12.72373 -12.54752 -12.37466 -11.88547 -11.79909 -11.72999 -11.60770 -11.27443 -11.06720 -10.80209 -10.64401 -10.50603 -10.05794 -9.70469 -9.59648 -8.99079 -8.42588 -8.37688 -6.02064 -4.02896 0.45904 0.77356 0.96715 3.07474 3.34910 3.40194 3.40895 3.42930 3.48948 3.99174 4.09849 4.39218 4.43268 4.50817 4.53603 4.61830 4.77527 4.82335 4.98187 5.13364 5.29896 5.35200 5.40642 5.55569 5.66781 5.76274 5.85155 5.99151 6.03587 6.58772 6.96213 7.27766 7.37156 7.95419 8.16555 8.95687 9.60506 11.07288 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.006008 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.750443 B = 4659.031587 C = 6021.058646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.241 3.759 10 N -0.978 5.978 11 C 0.095 3.905 12 C 0.425 3.575 13 F -0.180 7.180 14 F -0.197 7.197 15 F -0.147 7.147 16 S 2.682 3.318 17 O -0.957 6.957 18 O -0.920 6.920 19 C -0.720 4.720 20 C 0.001 3.999 21 C -0.158 4.158 22 C -0.043 4.043 23 C -0.177 4.177 24 C 0.203 3.797 25 F -0.105 7.105 26 H 0.263 0.737 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -17.053 -0.057 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.121 3.879 10 N -0.815 5.815 11 C -0.035 4.035 12 C 0.368 3.632 13 F -0.161 7.161 14 F -0.179 7.179 15 F -0.128 7.128 16 S 2.768 3.232 17 O -0.947 6.947 18 O -0.910 6.910 19 C -0.803 4.803 20 C -0.018 4.018 21 C -0.177 4.177 22 C -0.061 4.061 23 C -0.197 4.197 24 C 0.182 3.818 25 F -0.083 7.083 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.167 -16.624 0.489 16.632 hybrid contribution -0.169 0.864 -0.244 0.913 sum -0.001 -15.761 0.245 15.762 Atomic orbital electron populations 1.69913 1.05931 1.27131 1.50624 1.24838 0.94791 0.99098 0.94942 0.86618 0.79655 0.82717 0.78933 1.20038 1.21284 1.19992 1.21565 0.94079 0.90120 1.50728 0.91189 1.19583 0.86811 0.81643 0.99907 1.57671 1.59395 1.46124 1.18358 1.22176 0.93612 0.96937 0.90802 1.21333 0.85745 0.81960 0.74180 1.93211 1.66178 1.96167 1.60567 1.93120 1.88167 1.88991 1.47650 1.93407 1.90226 1.34093 1.95097 1.02608 0.73617 0.73137 0.73794 1.93556 1.37130 1.78501 1.85484 1.93660 1.85192 1.57126 1.55070 1.31519 1.10789 1.17521 1.20500 1.20919 1.00787 0.89686 0.90400 1.21325 0.93569 0.99761 1.03016 1.21298 0.95987 0.95850 0.92948 1.21298 1.00541 0.92386 1.05435 1.17213 0.91083 0.79855 0.93639 1.91716 1.89770 1.34387 1.92377 0.92725 0.94164 0.92124 0.87298 0.86119 0.83105 0.84527 0.84415 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.42 7.34 -34.44 -0.25 -14.67 16 8 H 0.07 1.94 6.07 -52.49 -0.32 1.62 16 9 C 0.24 5.80 4.95 -5.19 -0.03 5.77 16 10 N -0.98 -19.47 2.72 -115.66 -0.31 -19.78 16 11 C 0.09 1.53 5.44 -4.05 -0.02 1.51 16 12 C 0.42 7.89 3.28 37.16 0.12 8.01 16 13 F -0.18 -3.65 15.58 2.25 0.04 -3.62 16 14 F -0.20 -3.25 17.32 2.25 0.04 -3.21 16 15 F -0.15 -3.22 13.08 2.25 0.03 -3.19 16 16 S 2.68 52.37 5.20 -107.50 -0.56 51.81 16 17 O -0.96 -18.34 14.36 -57.17 -0.82 -19.16 16 18 O -0.92 -21.87 16.39 -57.17 -0.94 -22.80 16 19 C -0.72 -11.25 5.91 -39.52 -0.23 -11.48 16 20 C 0.00 0.01 9.55 -39.59 -0.38 -0.36 16 21 C -0.16 -1.48 10.04 -39.57 -0.40 -1.87 16 22 C -0.04 -0.39 10.04 -39.59 -0.40 -0.78 16 23 C -0.18 -2.07 10.03 -39.52 -0.40 -2.47 16 24 C 0.20 3.18 7.21 -39.42 -0.28 2.90 16 25 F -0.10 -1.98 13.76 2.25 0.03 -1.95 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.04 0.97 8.00 -51.93 -0.42 0.55 16 28 H 0.06 1.55 5.08 -51.93 -0.26 1.29 16 29 H 0.11 1.36 7.61 -51.93 -0.40 0.96 16 30 H 0.12 1.64 8.00 -51.93 -0.42 1.23 16 31 H 0.15 1.60 7.33 -52.49 -0.38 1.22 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -33.77 316.38 -6.97 -40.74 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -2.60 Total: -3.91 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.36 Total: -11.70 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.42 Total: -44.97 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.76 Total: -41.96 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 0.13 Total: -11.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.56 Total: 51.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.77 -6.97 -40.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173976507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.813 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds