Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99753 * 275.00143 * 10 9 7 12 12 C 1.52998 * 109.47247 * 84.99906 * 11 10 9 13 13 F 1.39904 * 109.47220 * 59.99500 * 12 11 10 14 14 F 1.39902 * 109.47469 * 179.97438 * 12 11 10 15 15 F 1.39897 * 109.47209 * 299.99698 * 12 11 10 16 16 S 1.65602 * 120.00006 * 94.99495 * 10 9 7 17 17 O 1.42097 * 106.40599 * 203.54158 * 16 10 9 18 18 O 1.42097 * 106.40158 * 336.46648 * 16 10 9 19 19 C 1.76208 * 107.21383 * 90.00215 * 16 10 9 20 20 C 1.38221 * 120.00733 * 115.00161 * 19 16 10 21 21 C 1.38231 * 120.02036 * 179.97438 * 20 19 16 22 22 C 1.38265 * 120.05216 * 0.02562 * 21 20 19 23 23 C 1.38177 * 120.02485 * 0.02562 * 22 21 20 24 24 C 1.38434 * 120.01621 * 294.72590 * 19 16 10 25 25 F 1.35111 * 120.02175 * 359.97438 * 24 19 16 26 26 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 28 28 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 29 29 H 1.09002 * 109.46665 * 204.99493 * 11 10 9 30 30 H 1.08998 * 109.47564 * 324.99734 * 11 10 9 31 31 H 1.07996 * 119.99309 * 359.97438 * 20 19 16 32 32 H 1.08004 * 119.97046 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.98636 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00968 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7630 -4.0976 -1.2634 12 6 3.9795 -3.2498 -1.6407 13 9 4.9464 -3.3475 -0.6343 14 9 4.5147 -3.7132 -2.8474 15 9 3.5902 -1.9139 -1.7853 16 16 2.6462 -4.3232 1.4292 17 8 3.9104 -4.9303 1.2004 18 8 2.4210 -3.3557 2.4453 19 6 1.5112 -5.6366 1.7325 20 6 1.9550 -6.9456 1.7411 21 6 1.0650 -7.9760 1.9796 22 6 -0.2699 -7.6987 2.2092 23 6 -0.7160 -6.3910 2.2000 24 6 0.1759 -5.3574 1.9680 25 9 -0.2578 -4.0778 1.9658 26 1 -0.4849 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 3.0664 -5.1384 -1.1507 30 1 2.0098 -4.0215 -2.0475 31 1 2.9974 -7.1634 1.5615 32 1 1.4128 -8.9985 1.9865 33 1 -0.9644 -8.5047 2.3949 34 1 -1.7588 -6.1747 2.3790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173976507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = -250.002744 kcal Electronic energy + Delta-G solvation = -29524.831981 eV Core-core repulsion = 24663.246670 eV Total energy + Delta-G solvation = -4861.585311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.87845 -50.26878 -48.43707 -48.30687 -39.92884 -38.36941 -37.68136 -36.96822 -34.62620 -32.49206 -31.57190 -30.84112 -28.22642 -24.90661 -24.60674 -23.93533 -23.72073 -20.35498 -19.71491 -19.57164 -19.25405 -18.66250 -18.40720 -18.07570 -17.83606 -17.59697 -16.86000 -16.80456 -16.29910 -15.93388 -15.47805 -15.24197 -15.22226 -15.06490 -14.80318 -14.62873 -14.55708 -14.51684 -14.47826 -14.06048 -13.63521 -13.61366 -13.47971 -13.36880 -13.20228 -12.97409 -12.95654 -12.65930 -12.60251 -12.37272 -11.95764 -11.88898 -11.57095 -10.61317 -10.52251 -10.17039 -9.91673 -8.16168 -6.21213 -0.81329 -0.38615 0.07334 1.38235 1.40932 1.47701 1.74632 1.96044 2.36608 2.43391 2.65895 2.97130 3.02315 3.11174 3.22183 3.23577 3.38636 3.68426 3.82945 3.93629 4.18096 4.22494 4.27712 4.53158 4.55773 4.78721 4.93606 5.08920 5.14928 5.23117 5.34761 5.54519 5.74960 5.81649 6.10585 6.81760 7.43704 8.92616 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.006008 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.750443 B = 4659.031587 C = 6021.058646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.256 3.744 10 N -0.984 5.984 11 C 0.088 3.912 12 C 0.418 3.582 13 F -0.193 7.193 14 F -0.183 7.183 15 F -0.172 7.172 16 S 2.683 3.317 17 O -0.962 6.962 18 O -0.980 6.980 19 C -0.727 4.727 20 C -0.008 4.008 21 C -0.139 4.139 22 C -0.023 4.023 23 C -0.176 4.176 24 C 0.160 3.840 25 F -0.137 7.137 26 H 0.265 0.735 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 -20.661 -0.374 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.134 3.866 10 N -0.821 5.821 11 C -0.040 4.040 12 C 0.362 3.638 13 F -0.175 7.175 14 F -0.165 7.165 15 F -0.153 7.153 16 S 2.776 3.224 17 O -0.952 6.952 18 O -0.971 6.971 19 C -0.817 4.817 20 C -0.027 4.027 21 C -0.157 4.157 22 C -0.040 4.040 23 C -0.195 4.195 24 C 0.139 3.861 25 F -0.116 7.116 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.182 0.818 32 H 0.201 0.799 33 H 0.206 0.794 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.256 -20.192 0.142 20.195 hybrid contribution -0.013 1.722 -0.130 1.727 sum -0.269 -18.470 0.013 18.472 Atomic orbital electron populations 1.69994 1.06843 1.27735 1.51859 1.25531 0.95606 1.01952 0.95197 0.85870 0.78804 0.79963 0.78729 1.19337 1.20109 1.20551 1.21888 0.93860 0.91868 1.49636 0.92210 1.19110 0.86911 0.81842 0.98772 1.57455 1.58800 1.45844 1.19959 1.22618 0.93105 0.98237 0.90063 1.21744 0.86409 0.81283 0.74390 1.93181 1.66871 1.96143 1.61300 1.93140 1.88063 1.88592 1.46659 1.93342 1.90503 1.36231 1.95230 1.01990 0.74061 0.73425 0.72892 1.93532 1.38057 1.78328 1.85310 1.93584 1.86248 1.60229 1.56993 1.30780 1.09774 1.17211 1.23903 1.21272 1.02246 0.88779 0.90397 1.21887 0.93067 1.00943 0.99837 1.21937 0.96804 0.95632 0.89652 1.21674 1.00914 0.92565 1.04335 1.17731 0.92085 0.79620 0.96666 1.91630 1.90081 1.36776 1.93092 0.92648 0.94409 0.94002 0.83181 0.83451 0.81783 0.79912 0.79441 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.93 13.29 21.45 0.28 -54.65 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.94 46.53 29.54 68.60 2.03 48.55 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.53 -30.29 7.34 25.60 0.19 -30.10 16 8 H 0.06 3.45 6.07 -2.91 -0.02 3.43 16 9 C 0.26 12.80 4.95 85.63 0.42 13.22 16 10 N -0.98 -39.93 2.72 -519.83 -1.41 -41.35 16 11 C 0.09 2.77 5.44 86.38 0.47 3.24 16 12 C 0.42 15.45 3.28 71.98 0.24 15.69 16 13 F -0.19 -7.93 15.58 44.97 0.70 -7.23 16 14 F -0.18 -5.80 17.32 44.97 0.78 -5.02 16 15 F -0.17 -7.66 13.08 44.97 0.59 -7.07 16 16 S 2.68 107.38 5.20 -56.49 -0.29 107.09 16 17 O -0.96 -36.89 14.36 -128.00 -1.84 -38.73 16 18 O -0.98 -49.45 16.39 -128.00 -2.10 -51.55 16 19 C -0.73 -22.22 5.91 22.31 0.13 -22.09 16 20 C -0.01 -0.16 9.55 22.26 0.21 0.05 16 21 C -0.14 -1.81 10.04 22.27 0.22 -1.59 16 22 C -0.02 -0.28 10.04 22.26 0.22 -0.06 16 23 C -0.18 -3.61 10.03 22.31 0.22 -3.38 16 24 C 0.16 4.97 7.21 22.37 0.16 5.13 16 25 F -0.14 -5.51 13.76 44.97 0.62 -4.89 16 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.04 1.88 8.00 -2.39 -0.02 1.86 16 28 H 0.04 2.28 5.08 -2.38 -0.01 2.27 16 29 H 0.15 3.41 7.61 -2.39 -0.02 3.39 16 30 H 0.15 3.80 8.00 -2.39 -0.02 3.79 16 31 H 0.16 2.96 7.33 -2.91 -0.02 2.94 16 32 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -78.77 316.38 3.48 -75.29 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: 1.17 Total: -1.96 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 2.96 Total: -18.49 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -1.13 Total: -95.99 kcal Atomic # 8 Polarization: -86.35 SS G_CDS: -3.94 Total: -90.28 kcal Atomic # 9 Polarization: -26.89 SS G_CDS: 2.69 Total: -24.21 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 107.38 SS G_CDS: -0.29 Total: 107.09 kcal Total: -78.77 3.48 -75.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173976507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.711 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds