Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00146 * 2 1 4 4 C 1.38736 * 120.05266 * 0.26991 * 3 2 1 5 5 C 1.38210 * 119.93194 * 180.25693 * 4 3 2 6 6 Br 1.89102 * 119.98075 * 179.77231 * 5 4 3 7 7 C 1.38377 * 120.04132 * 359.74645 * 5 4 3 8 8 C 1.38227 * 120.09847 * 359.97438 * 7 5 4 9 9 C 1.38173 * 120.06533 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.01743 * 179.97438 * 9 8 7 11 11 N 1.46896 * 109.47363 * 259.99997 * 10 9 8 12 12 C 1.47955 * 111.00525 * 169.99959 * 11 10 9 13 13 C 1.53937 * 86.18157 * 222.41550 * 12 11 10 14 14 O 1.42897 * 113.73268 * 269.35842 * 13 12 11 15 15 C 1.50698 * 113.73227 * 138.07796 * 13 12 11 16 16 H 1.08007 * 119.99937 * 0.02562 * 15 13 12 17 17 C 1.37873 * 120.00395 * 179.97438 * 15 13 12 18 18 N 1.31518 * 119.99877 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00430 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47373 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46934 * 120.00133 * 19 17 15 22 22 H 1.48505 * 109.47634 * 240.00164 * 19 17 15 23 23 C 1.47961 * 111.00015 * 70.63603 * 11 10 9 24 24 H 1.09004 * 109.46673 * 300.00110 * 1 2 3 25 25 H 1.08997 * 109.46848 * 60.00053 * 1 2 3 26 26 H 1.08997 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.03216 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.95183 * 179.97438 * 7 5 4 29 29 H 1.08001 * 119.96800 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47366 * 139.99617 * 10 9 8 31 31 H 1.09002 * 109.46903 * 19.99905 * 10 9 8 32 32 H 1.09005 * 113.75866 * 108.09946 * 12 11 10 33 33 H 1.08996 * 113.75657 * 336.74002 * 12 11 10 34 34 H 0.96704 * 113.99705 * 180.02562 * 14 13 12 35 35 H 0.96994 * 120.00600 * 180.02562 * 18 17 15 36 36 H 1.09002 * 113.75838 * 23.27140 * 23 11 10 37 37 H 1.09002 * 113.86277 * 251.91297 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3751 0.0057 5 6 1.9215 3.6052 0.0003 6 35 0.8944 5.1930 0.0015 7 6 3.3035 3.6757 -0.0054 8 6 4.0567 2.5166 -0.0053 9 6 3.4312 1.2846 0.0001 10 6 4.2535 0.0217 -0.0003 11 7 4.3137 -0.5231 -1.3631 12 6 5.3007 -1.6217 -1.4521 13 6 5.7314 -0.9887 -2.7875 14 8 5.0255 -1.4993 -3.9202 15 6 7.2244 -0.9559 -2.9895 16 1 7.8809 -1.3558 -2.2309 17 6 7.7523 -0.4164 -4.1433 18 7 6.9529 0.0701 -5.0674 19 14 9.6029 -0.3751 -4.3934 20 1 10.2753 -0.9795 -3.2154 21 1 9.9549 -1.1458 -5.6130 22 1 10.0500 1.0323 -4.5511 23 6 5.1516 0.3270 -2.2375 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2129 2.3202 0.0096 28 1 3.7943 4.6377 -0.0101 29 1 5.1352 2.5741 -0.0093 30 1 3.7947 -0.7108 0.6639 31 1 5.2624 0.2449 0.3466 32 1 4.8507 -2.6088 -1.5589 33 1 6.0695 -1.5849 -0.6803 34 1 5.2934 -1.1044 -4.7613 35 1 7.3241 0.4493 -5.8793 36 1 5.8769 0.9339 -1.6955 37 1 4.5841 0.8979 -2.9725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190980776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = -18.914815 kcal Electronic energy + Delta-G solvation = -21829.941057 eV Core-core repulsion = 18427.222124 eV Total energy + Delta-G solvation = -3402.718933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33273 -38.80351 -37.38649 -34.49672 -32.67247 -32.02657 -30.33097 -30.23957 -27.95426 -27.08430 -25.52747 -24.96965 -22.61710 -22.30400 -20.80297 -18.55746 -17.81668 -17.21553 -16.37601 -15.79601 -15.69992 -15.07430 -14.92032 -14.47110 -14.21893 -13.97055 -13.65365 -13.51027 -13.02402 -12.45258 -12.38594 -11.99066 -11.86539 -11.54824 -11.53761 -11.43506 -11.16428 -10.93774 -10.70461 -10.53341 -10.43404 -10.40197 -10.26758 -9.99166 -9.33903 -8.79839 -8.62423 -8.23000 -8.01886 -7.74750 -6.24960 -4.35285 1.08069 1.38954 1.52873 3.18526 3.27618 3.31158 3.32071 3.61958 4.26050 4.71096 4.82002 4.91629 4.98486 5.05804 5.09453 5.14260 5.27925 5.46016 5.55751 5.62948 5.69592 5.96969 6.01769 6.07113 6.11721 6.25627 6.36009 6.38098 6.55129 6.68748 6.73475 7.08899 7.23329 7.38713 7.40865 7.77756 7.99944 8.04413 8.66980 9.35020 9.69019 10.80506 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003236 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.046668 B = 8650.259279 C = 9692.973682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.293 6.293 3 C 0.154 3.846 4 C -0.188 4.188 5 C -0.056 4.056 6 Br -0.059 7.059 7 C -0.128 4.128 8 C -0.069 4.069 9 C -0.081 4.081 10 C 0.063 3.937 11 N -0.466 5.466 12 C 0.008 3.992 13 C 0.244 3.756 14 O -0.572 6.572 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.010 4.010 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.388 0.612 35 H 0.270 0.730 36 H 0.057 0.943 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 8.604 11.871 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.206 6.206 3 C 0.107 3.893 4 C -0.209 4.209 5 C -0.135 4.135 6 Br 0.026 6.974 7 C -0.148 4.148 8 C -0.088 4.088 9 C -0.082 4.082 10 C -0.065 4.065 11 N -0.188 5.188 12 C -0.121 4.121 13 C 0.203 3.797 14 O -0.384 6.384 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.140 4.140 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.570 8.600 11.992 20.048 hybrid contribution 1.956 0.601 -0.313 2.070 sum -11.614 9.201 11.679 18.867 Atomic orbital electron populations 1.23074 0.78902 1.04037 1.00980 1.86234 1.20720 1.25711 1.87891 1.18669 0.91592 0.83950 0.95085 1.21059 1.00204 0.90787 1.08822 1.21389 0.94250 0.91019 1.06861 1.96667 1.71187 1.31809 1.97748 1.20937 0.91462 0.99326 1.03122 1.20978 1.00285 0.90482 0.97102 1.19384 0.90765 0.95941 1.02113 1.21463 0.96890 0.93054 0.95078 1.68690 1.38679 1.06444 1.05018 1.24161 0.92995 0.96287 0.98613 1.19740 0.89332 0.87311 0.83337 1.86041 1.65399 1.67918 1.19029 1.21706 0.91681 1.39906 1.04235 0.91624 1.25053 0.98844 0.93708 0.95470 1.69357 1.35108 1.40446 1.08897 0.86386 0.84531 0.77825 0.78360 1.19602 1.20682 1.20780 1.24671 0.94202 0.99105 0.95974 0.93038 0.92638 0.88124 0.84761 0.85036 0.84487 0.90287 0.93699 0.90642 0.91773 0.75657 0.91949 0.92472 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.29 -4.43 9.73 -19.41 -0.19 -4.62 16 3 C 0.15 2.37 6.66 -39.22 -0.26 2.11 16 4 C -0.19 -2.54 8.78 -39.41 -0.35 -2.88 16 5 C -0.06 -0.74 6.22 -39.54 -0.25 -0.99 16 6 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 16 7 C -0.13 -1.71 9.78 -39.53 -0.39 -2.10 16 8 C -0.07 -1.00 9.47 -39.61 -0.38 -1.38 16 9 C -0.08 -1.30 4.98 -104.47 -0.52 -1.82 16 10 C 0.06 1.10 4.61 -4.98 -0.02 1.07 16 11 N -0.47 -9.81 6.25 -239.70 -1.50 -11.31 16 12 C 0.01 0.17 7.36 -2.77 -0.02 0.15 16 13 C 0.24 6.19 1.44 -90.84 -0.13 6.06 16 14 O -0.57 -15.68 13.49 -35.23 -0.48 -16.15 16 15 C -0.54 -14.24 8.62 -34.44 -0.30 -14.54 16 16 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 18 N -0.90 -24.09 11.08 55.43 0.61 -23.48 16 19 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.01 -0.24 6.70 -2.77 -0.02 -0.26 16 24 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 25 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 26 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 1.83 8.04 -52.49 -0.42 1.41 16 30 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 31 H 0.04 0.74 7.55 -51.93 -0.39 0.35 16 32 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.06 1.30 7.74 -51.93 -0.40 0.90 16 34 H 0.39 10.82 6.42 45.56 0.29 11.11 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.06 1.28 7.73 -51.93 -0.40 0.88 16 37 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -28.78 330.53 -9.71 -38.49 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.10 Total: 11.35 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.73 Total: -11.54 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.88 Total: -34.78 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.66 Total: -20.77 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.78 -9.71 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190980776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.573 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds