Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35926 * 116.99663 * 2 1 4 4 C 1.38825 * 120.06142 * 270.02152 * 3 2 1 5 5 Br 1.89100 * 120.03521 * 359.97438 * 4 3 2 6 6 C 1.38194 * 119.92857 * 179.97438 * 4 3 2 7 7 C 1.38284 * 120.04429 * 359.97438 * 6 4 3 8 8 C 1.38233 * 120.11995 * 359.76599 * 7 6 4 9 9 C 1.38192 * 120.06812 * 0.51131 * 8 7 6 10 10 C 1.50699 * 120.01917 * 179.74486 * 9 8 7 11 11 N 1.46904 * 109.46954 * 259.72252 * 10 9 8 12 12 C 1.47960 * 110.99873 * 190.00008 * 11 10 9 13 13 C 1.53937 * 86.17949 * 137.58413 * 12 11 10 14 14 O 1.42905 * 113.73441 * 90.63520 * 13 12 11 15 15 C 1.50700 * 113.73580 * 221.92294 * 13 12 11 16 16 H 1.07998 * 120.00161 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00112 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99957 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 119.99923 * 359.97438 * 17 15 13 20 20 H 1.48495 * 109.47176 * 90.00267 * 19 17 15 21 21 H 1.48505 * 109.47126 * 210.00474 * 19 17 15 22 22 H 1.48504 * 109.47372 * 329.99999 * 19 17 15 23 23 C 1.47958 * 111.00220 * 289.36010 * 11 10 9 24 24 H 1.08996 * 109.47665 * 299.99977 * 1 2 3 25 25 H 1.09005 * 109.47209 * 60.00261 * 1 2 3 26 26 H 1.09007 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.97475 * 179.97438 * 6 4 3 28 28 H 1.08004 * 119.94063 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.96678 * 180.25593 * 8 7 6 30 30 H 1.09004 * 109.47043 * 139.72416 * 10 9 8 31 31 H 1.09003 * 109.47779 * 19.72300 * 10 9 8 32 32 H 1.09001 * 113.75911 * 23.26902 * 12 11 10 33 33 H 1.08995 * 113.86303 * 251.91269 * 12 11 10 34 34 H 0.96692 * 114.00071 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99527 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.75711 * 108.10017 * 23 11 10 37 37 H 1.08998 * 113.76069 * 336.74148 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3612 1.8310 -1.2015 5 35 1.9334 0.9909 -2.8408 6 6 2.9881 3.0626 -1.1983 7 6 3.3006 3.6773 0.0003 8 6 2.9827 3.0643 1.1978 9 6 2.3610 1.8301 1.2003 10 6 2.0201 1.1602 2.5064 11 7 3.0304 0.1380 2.8108 12 6 2.6080 -0.7012 3.9537 13 6 3.1308 -1.8964 3.1366 14 8 4.5034 -2.2068 3.3851 15 6 2.2341 -3.1065 3.1901 16 1 1.3214 -3.0772 3.7666 17 6 2.5796 -4.2514 2.5039 18 7 1.7973 -5.3076 2.5511 19 14 4.1587 -4.3024 1.5073 20 1 5.2714 -4.7800 2.3670 21 1 3.9890 -5.2274 0.3580 22 1 4.4711 -2.9404 1.0046 23 6 2.9100 -1.0163 1.8931 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.2341 3.5453 -2.1326 28 1 3.7901 4.6400 0.0009 29 1 3.2241 3.5485 2.1325 30 1 1.0397 0.6902 2.4287 31 1 2.0044 1.9040 3.3031 32 1 1.5297 -0.7160 4.1128 33 1 3.1702 -0.5154 4.8688 34 1 4.8357 -2.9573 2.8740 35 1 2.0402 -6.1129 2.0680 36 1 3.7148 -1.0810 1.1608 37 1 1.9202 -1.1233 1.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191916182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = 5.818935 kcal Electronic energy + Delta-G solvation = -22639.115322 eV Core-core repulsion = 19237.468925 eV Total energy + Delta-G solvation = -3401.646398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47362 -38.86557 -37.30848 -34.96658 -32.70616 -32.35313 -31.22435 -29.27668 -28.27547 -26.81716 -25.71330 -25.26094 -22.85332 -22.24798 -20.76237 -19.03158 -17.82224 -17.25658 -16.58088 -16.09710 -15.90033 -15.59365 -14.87963 -14.48664 -14.22046 -13.85546 -13.71280 -13.30557 -12.93718 -12.87448 -12.68504 -12.32293 -12.08432 -11.91198 -11.55401 -11.27995 -11.02304 -10.89080 -10.71678 -10.55760 -10.40522 -10.26081 -9.97686 -9.68650 -9.31924 -8.90392 -8.71189 -8.64106 -8.36769 -7.90950 -6.27325 -4.30373 0.96465 1.10514 1.60006 3.13040 3.25545 3.29019 3.33247 3.80487 4.20698 4.60359 4.73863 4.76521 4.96537 5.11576 5.17577 5.22449 5.33972 5.39023 5.47037 5.55003 5.66526 5.76445 5.84320 5.93736 5.99290 6.08032 6.19073 6.36697 6.45073 6.53565 6.55800 6.89519 6.98663 7.11899 7.40615 7.48412 7.82008 8.19928 8.73811 8.77105 9.33405 10.85191 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.005056 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.716778 B = 5536.902235 C = 6566.795177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.312 6.312 3 C 0.132 3.868 4 C -0.113 4.113 5 Br -0.045 7.045 6 C -0.087 4.087 7 C -0.124 4.124 8 C -0.079 4.079 9 C -0.079 4.079 10 C 0.060 3.940 11 N -0.474 5.474 12 C 0.023 3.977 13 C 0.196 3.804 14 O -0.554 6.554 15 C -0.533 4.533 16 H 0.084 0.916 17 C 0.080 3.920 18 N -0.884 5.884 19 Si 0.856 3.144 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.251 1.251 23 C -0.022 4.022 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.347 0.653 35 H 0.268 0.732 36 H 0.065 0.935 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 17.667 -9.521 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.229 6.229 3 C 0.086 3.914 4 C -0.193 4.193 5 Br 0.041 6.959 6 C -0.107 4.107 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.081 4.081 10 C -0.068 4.068 11 N -0.197 5.197 12 C -0.105 4.105 13 C 0.156 3.844 14 O -0.364 6.364 15 C -0.571 4.571 16 H 0.102 0.898 17 C -0.124 4.124 18 N -0.521 5.521 19 Si 0.685 3.315 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.176 1.176 23 C -0.150 4.150 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.121 0.879 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.199 0.801 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.454 17.853 -9.762 20.399 hybrid contribution 0.028 -0.635 -0.748 0.982 sum -1.427 17.217 -10.510 20.222 Atomic orbital electron populations 1.23030 0.78736 1.04222 1.00257 1.86325 1.19897 1.22983 1.93652 1.18329 0.96365 0.86213 0.90499 1.22263 1.08025 0.97636 0.91366 1.96683 1.93044 1.80928 1.25288 1.20969 0.97610 0.92990 0.99174 1.21121 1.00893 1.00523 0.91726 1.21101 0.96040 0.94086 0.98596 1.20176 0.99228 0.94339 0.94378 1.21551 0.95683 0.96888 0.92709 1.68696 1.38526 1.06912 1.05565 1.24005 0.98846 0.92251 0.95413 1.20545 0.80151 0.92835 0.90915 1.86443 1.28064 1.52836 1.69070 1.21358 1.08249 0.95775 1.31671 0.89785 1.24960 0.96621 0.95399 0.95464 1.69874 1.37252 1.03187 1.41792 0.87347 0.84106 0.79327 0.80697 1.19683 1.21344 1.17551 1.25275 1.02429 0.89998 0.97330 0.93528 0.93555 0.87886 0.84967 0.85034 0.84941 0.93220 0.90357 0.90995 0.90184 0.80115 0.92223 0.91630 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.73 101.05 1.08 1.51 16 2 O -0.31 -5.24 5.56 -19.51 -0.11 -5.35 16 3 C 0.13 2.07 5.23 -39.20 -0.20 1.87 16 4 C -0.11 -1.58 6.24 -39.38 -0.25 -1.83 16 5 Br -0.04 -0.59 33.16 -68.01 -2.26 -2.85 16 6 C -0.09 -1.01 9.78 -39.58 -0.39 -1.40 16 7 C -0.12 -1.32 10.04 -39.57 -0.40 -1.72 16 8 C -0.08 -0.97 9.66 -39.60 -0.38 -1.35 16 9 C -0.08 -1.19 5.29 -104.48 -0.55 -1.74 16 10 C 0.06 0.96 4.89 -4.97 -0.02 0.93 16 11 N -0.47 -9.45 6.25 -239.70 -1.50 -10.95 16 12 C 0.02 0.48 7.36 -2.77 -0.02 0.46 16 13 C 0.20 4.81 1.06 -90.84 -0.10 4.72 16 14 O -0.55 -14.18 13.31 -35.23 -0.47 -14.65 16 15 C -0.53 -14.68 9.20 -34.44 -0.32 -15.00 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.88 -26.06 13.96 55.43 0.77 -25.29 16 19 Si 0.86 20.87 24.33 -169.99 -4.14 16.73 16 20 H -0.27 -6.37 7.05 56.52 0.40 -5.97 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.25 -6.00 5.29 56.52 0.30 -5.70 16 23 C -0.02 -0.49 4.79 -2.77 -0.01 -0.50 16 24 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.13 1.36 8.03 -52.49 -0.42 0.93 16 30 H 0.05 0.80 6.11 -51.93 -0.32 0.48 16 31 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 32 H 0.07 1.41 7.74 -51.93 -0.40 1.01 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.35 8.63 3.31 45.56 0.15 8.78 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.58 6.98 -51.93 -0.36 1.22 16 37 H 0.10 2.20 4.98 -51.93 -0.26 1.95 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -31.00 314.96 -8.78 -39.78 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.17 Total: 9.75 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.65 Total: -11.92 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.73 Total: -36.24 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.58 Total: -20.00 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.73 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.26 Total: -2.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.00 -8.78 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191916182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.596 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds