Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35926 * 116.99663 * 2 1 4 4 C 1.38825 * 120.06142 * 270.02152 * 3 2 1 5 5 Br 1.89100 * 120.03521 * 359.97438 * 4 3 2 6 6 C 1.38194 * 119.92857 * 179.97438 * 4 3 2 7 7 C 1.38284 * 120.04429 * 359.97438 * 6 4 3 8 8 C 1.38233 * 120.11995 * 359.76599 * 7 6 4 9 9 C 1.38192 * 120.06812 * 0.51131 * 8 7 6 10 10 C 1.50699 * 120.01917 * 179.74486 * 9 8 7 11 11 N 1.46904 * 109.46954 * 259.72252 * 10 9 8 12 12 C 1.47960 * 110.99873 * 190.00008 * 11 10 9 13 13 C 1.53937 * 86.17949 * 137.58413 * 12 11 10 14 14 O 1.42905 * 113.73441 * 90.63520 * 13 12 11 15 15 C 1.50700 * 113.73580 * 221.92294 * 13 12 11 16 16 H 1.07998 * 120.00161 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00112 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99957 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 119.99923 * 359.97438 * 17 15 13 20 20 H 1.48495 * 109.47176 * 90.00267 * 19 17 15 21 21 H 1.48505 * 109.47126 * 210.00474 * 19 17 15 22 22 H 1.48504 * 109.47372 * 329.99999 * 19 17 15 23 23 C 1.47958 * 111.00220 * 289.36010 * 11 10 9 24 24 H 1.08996 * 109.47665 * 299.99977 * 1 2 3 25 25 H 1.09005 * 109.47209 * 60.00261 * 1 2 3 26 26 H 1.09007 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.97475 * 179.97438 * 6 4 3 28 28 H 1.08004 * 119.94063 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.96678 * 180.25593 * 8 7 6 30 30 H 1.09004 * 109.47043 * 139.72416 * 10 9 8 31 31 H 1.09003 * 109.47779 * 19.72300 * 10 9 8 32 32 H 1.09001 * 113.75911 * 23.26902 * 12 11 10 33 33 H 1.08995 * 113.86303 * 251.91269 * 12 11 10 34 34 H 0.96692 * 114.00071 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99527 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.75711 * 108.10017 * 23 11 10 37 37 H 1.08998 * 113.76069 * 336.74148 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3612 1.8310 -1.2015 5 35 1.9334 0.9909 -2.8408 6 6 2.9881 3.0626 -1.1983 7 6 3.3006 3.6773 0.0003 8 6 2.9827 3.0643 1.1978 9 6 2.3610 1.8301 1.2003 10 6 2.0201 1.1602 2.5064 11 7 3.0304 0.1380 2.8108 12 6 2.6080 -0.7012 3.9537 13 6 3.1308 -1.8964 3.1366 14 8 4.5034 -2.2068 3.3851 15 6 2.2341 -3.1065 3.1901 16 1 1.3214 -3.0772 3.7666 17 6 2.5796 -4.2514 2.5039 18 7 1.7973 -5.3076 2.5511 19 14 4.1587 -4.3024 1.5073 20 1 5.2714 -4.7800 2.3670 21 1 3.9890 -5.2274 0.3580 22 1 4.4711 -2.9404 1.0046 23 6 2.9100 -1.0163 1.8931 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.2341 3.5453 -2.1326 28 1 3.7901 4.6400 0.0009 29 1 3.2241 3.5485 2.1325 30 1 1.0397 0.6902 2.4287 31 1 2.0044 1.9040 3.3031 32 1 1.5297 -0.7160 4.1128 33 1 3.1702 -0.5154 4.8688 34 1 4.8357 -2.9573 2.8740 35 1 2.0402 -6.1129 2.0680 36 1 3.7148 -1.0810 1.1608 37 1 1.9202 -1.1233 1.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191916182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = -17.687816 kcal Electronic energy + Delta-G solvation = -22640.134652 eV Core-core repulsion = 19237.468925 eV Total energy + Delta-G solvation = -3402.665727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70747 -40.40207 -38.34902 -36.75867 -34.52095 -33.84135 -32.30805 -30.31812 -29.77072 -28.07148 -27.27121 -26.97793 -24.34009 -23.22066 -22.01652 -20.83685 -19.38626 -18.78879 -18.19089 -17.53070 -17.25948 -16.73578 -16.34994 -15.81922 -15.59651 -15.24851 -14.95790 -14.86632 -14.67283 -14.40548 -14.00084 -13.75332 -13.45465 -13.22366 -12.88681 -12.80359 -12.50182 -12.36949 -12.20956 -12.10452 -11.89925 -11.82203 -11.27549 -11.15363 -10.95134 -10.88965 -10.35708 -9.83224 -9.63824 -9.46396 -8.44317 -6.51341 0.00279 0.13112 0.61232 1.17351 1.28438 1.33388 2.15475 2.37049 2.72225 2.81458 3.14723 3.53181 3.69507 3.82506 4.08440 4.18577 4.22286 4.24455 4.30117 4.33607 4.37944 4.49950 4.54130 4.69410 4.74072 4.83871 4.88595 5.07088 5.09021 5.22210 5.27283 5.34914 5.43057 5.48924 5.68209 6.03247 6.21545 6.42419 6.51723 6.78293 7.15720 8.71348 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.005056 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.716778 B = 5536.902235 C = 6566.795177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.339 6.339 3 C 0.110 3.890 4 C -0.130 4.130 5 Br -0.048 7.048 6 C -0.083 4.083 7 C -0.113 4.113 8 C -0.077 4.077 9 C -0.103 4.103 10 C 0.062 3.938 11 N -0.473 5.473 12 C 0.032 3.968 13 C 0.175 3.825 14 O -0.560 6.560 15 C -0.538 4.538 16 H 0.054 0.946 17 C 0.031 3.969 18 N -0.926 5.926 19 Si 0.912 3.088 20 H -0.254 1.254 21 H -0.284 1.284 22 H -0.246 1.246 23 C -0.003 4.003 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.348 0.652 35 H 0.271 0.729 36 H 0.047 0.953 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 20.493 -10.071 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.210 4.210 5 Br 0.037 6.963 6 C -0.103 4.103 7 C -0.131 4.131 8 C -0.095 4.095 9 C -0.105 4.105 10 C -0.066 4.066 11 N -0.195 5.195 12 C -0.097 4.097 13 C 0.135 3.865 14 O -0.371 6.371 15 C -0.576 4.576 16 H 0.072 0.928 17 C -0.170 4.170 18 N -0.564 5.564 19 Si 0.738 3.262 20 H -0.180 1.180 21 H -0.211 1.211 22 H -0.170 1.170 23 C -0.132 4.132 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.174 0.826 28 H 0.188 0.812 29 H 0.174 0.826 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.199 0.801 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.139 20.697 -10.303 23.120 hybrid contribution -0.446 -1.422 -0.560 1.592 sum -0.586 19.275 -10.863 22.133 Atomic orbital electron populations 1.23089 0.77854 1.04141 1.01245 1.86238 1.21091 1.24398 1.93886 1.18567 0.97316 0.86218 0.91537 1.22431 1.09048 0.98670 0.90867 1.96666 1.93172 1.81325 1.25094 1.21362 0.96132 0.91940 1.00835 1.21556 0.99482 1.01538 0.90544 1.21432 0.94743 0.92973 1.00385 1.20192 1.01237 0.95732 0.93354 1.21579 0.94216 0.96222 0.94575 1.68583 1.40313 1.06608 1.04026 1.23939 0.99316 0.90585 0.95814 1.20804 0.79257 0.92702 0.93763 1.86433 1.28344 1.52903 1.69411 1.21548 1.07819 0.97376 1.30842 0.92826 1.25676 0.99696 0.95046 0.96552 1.69991 1.39216 1.03964 1.43249 0.86432 0.80806 0.79518 0.79479 1.17955 1.21074 1.17022 1.24932 1.01551 0.90699 0.96060 0.92792 0.92274 0.88517 0.82591 0.81171 0.82642 0.93749 0.87702 0.90204 0.89264 0.80054 0.91992 0.93460 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.73 113.37 1.22 2.04 16 2 O -0.34 -11.37 5.56 -92.72 -0.52 -11.89 16 3 C 0.11 3.30 5.23 22.51 0.12 3.42 16 4 C -0.13 -3.42 6.24 22.40 0.14 -3.28 16 5 Br -0.05 -1.22 33.16 -20.37 -0.68 -1.90 16 6 C -0.08 -1.65 9.78 22.27 0.22 -1.43 16 7 C -0.11 -1.91 10.04 22.28 0.22 -1.69 16 8 C -0.08 -1.59 9.66 22.26 0.22 -1.38 16 9 C -0.10 -2.88 5.29 -19.77 -0.10 -2.98 16 10 C 0.06 1.86 4.89 85.56 0.42 2.28 16 11 N -0.47 -18.15 6.25 -915.49 -5.72 -23.88 16 12 C 0.03 1.30 7.36 86.41 0.64 1.94 16 13 C 0.18 8.57 1.06 -10.89 -0.01 8.56 16 14 O -0.56 -28.23 13.31 -148.98 -1.98 -30.21 16 15 C -0.54 -30.32 9.20 25.60 0.24 -30.09 16 16 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 17 C 0.03 1.75 5.47 84.65 0.46 2.21 16 18 N -0.93 -55.94 13.96 21.45 0.30 -55.64 16 19 Si 0.91 43.37 24.33 68.60 1.67 45.04 16 20 H -0.25 -11.35 7.05 99.48 0.70 -10.65 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.25 -11.43 5.29 99.48 0.53 -10.90 16 23 C 0.00 -0.15 4.79 86.40 0.41 0.26 16 24 H 0.05 1.34 7.12 -2.39 -0.02 1.32 16 25 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.16 2.46 8.03 -2.91 -0.02 2.44 16 30 H 0.04 1.38 6.11 -2.38 -0.01 1.37 16 31 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 32 H 0.08 3.09 7.74 -2.39 -0.02 3.07 16 33 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.35 16.91 3.31 -74.06 -0.25 16.67 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.05 2.26 6.98 -2.39 -0.02 2.24 16 37 H 0.10 4.34 4.98 -2.39 -0.01 4.33 16 Total: -1.00 -67.64 314.96 -2.08 -69.72 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.67 Total: 28.90 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.18 Total: -20.14 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -5.43 Total: -79.52 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -2.50 Total: -42.10 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.67 Total: 45.04 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -0.68 Total: -1.90 kcal Total: -67.64 -2.08 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191916182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.030 kcal (2) G-P(sol) polarization free energy of solvation -67.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds