Wall clock time and date at job start Sat Apr 11 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 H 1.09005 * 109.46842 * 178.46449 * 3 2 1 5 5 C 1.50690 * 109.47336 * 298.46415 * 3 2 1 6 6 H 1.08007 * 119.99944 * 119.99935 * 5 3 2 7 7 C 1.37873 * 120.00267 * 300.00061 * 5 3 2 8 8 N 1.31510 * 120.00163 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00156 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47153 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46910 * 120.00229 * 9 7 5 12 12 H 1.48502 * 109.47112 * 240.00062 * 9 7 5 13 13 N 1.46505 * 109.46975 * 58.46708 * 3 2 1 14 14 S 1.65599 * 119.99676 * 96.16958 * 13 3 2 15 15 O 1.42106 * 106.39644 * 178.78599 * 14 13 3 16 16 O 1.42097 * 106.40595 * 311.70243 * 14 13 3 17 17 C 1.76196 * 107.22029 * 65.24970 * 14 13 3 18 18 C 1.38388 * 119.99964 * 269.72157 * 17 14 13 19 19 F 1.35100 * 119.99873 * 359.97438 * 18 17 14 20 20 C 1.38639 * 120.00248 * 179.79369 * 18 17 14 21 21 F 1.35101 * 120.00245 * 180.25274 * 20 18 17 22 22 C 1.38394 * 119.99926 * 0.45645 * 20 18 17 23 23 C 1.38387 * 119.99741 * 359.79677 * 22 20 18 24 24 F 1.35101 * 119.99712 * 179.97438 * 23 22 20 25 25 C 1.38393 * 120.00308 * 89.99745 * 17 14 13 26 26 F 1.35101 * 119.99886 * 359.95050 * 25 17 14 27 27 H 1.09006 * 109.47105 * 295.74026 * 1 2 3 28 28 H 1.08993 * 109.47223 * 175.74324 * 1 2 3 29 29 H 1.09001 * 109.47676 * 55.73609 * 1 2 3 30 30 H 1.08998 * 109.46951 * 120.00171 * 2 1 3 31 31 H 1.08994 * 109.47191 * 240.00495 * 2 1 3 32 32 H 0.96997 * 120.00864 * 179.97438 * 8 7 5 33 33 H 0.96995 * 119.99755 * 276.16929 * 13 3 2 34 34 H 1.08001 * 119.99958 * 179.76825 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1296 1.4427 0.0275 5 6 1.5690 2.1419 -1.2490 6 1 0.9458 3.0208 -1.1734 7 6 1.9335 1.6598 -2.4882 8 7 2.6919 0.5893 -2.5802 9 14 1.3491 2.5263 -4.0364 10 1 0.5144 3.6965 -3.6636 11 1 2.5239 2.9862 -4.8197 12 1 0.5449 1.5852 -4.8568 13 7 1.5216 2.1437 1.1773 14 16 2.4483 2.2630 2.5446 15 8 1.6869 3.0131 3.4810 16 8 2.9399 0.9567 2.8113 17 6 3.8509 3.2495 2.1397 18 6 5.0045 2.6504 1.6649 19 9 5.0553 1.3090 1.5123 20 6 6.1067 3.4270 1.3422 21 9 7.2311 2.8426 0.8739 22 6 6.0565 4.8006 1.5039 23 6 4.9047 5.3992 1.9836 24 9 4.8560 6.7400 2.1419 25 6 3.8009 4.6230 2.3018 26 9 2.6763 5.2075 2.7697 27 1 -0.3633 0.4463 0.9257 28 1 -0.3633 -1.0248 -0.0763 29 1 -0.3634 0.5786 -0.8493 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 2.9481 0.2499 -3.4520 33 1 0.6357 2.5381 1.1559 34 1 6.9164 5.4052 1.2561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193832631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:58 Heat of formation + Delta-G solvation = -218.546132 kcal Electronic energy + Delta-G solvation = -29161.962417 eV Core-core repulsion = 24301.741167 eV Total energy + Delta-G solvation = -4860.221250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88608 -49.76545 -48.93763 -48.83013 -38.78879 -36.95098 -36.11286 -35.56482 -32.33526 -31.59407 -30.41004 -30.10610 -26.48712 -24.68593 -23.65864 -23.33601 -20.21167 -19.69088 -18.85684 -18.56163 -18.24113 -17.60774 -16.99585 -16.72975 -16.38741 -16.21651 -16.11098 -15.80487 -15.34152 -15.23555 -15.09128 -15.06241 -14.64835 -14.52766 -13.71521 -13.56981 -13.30401 -12.89778 -12.80193 -12.46525 -12.32643 -11.95179 -11.87655 -11.74376 -11.67378 -11.15620 -11.09228 -10.93240 -10.66327 -10.48210 -10.11648 -9.91106 -9.74644 -9.25203 -8.87655 -8.71096 -8.38743 -6.21434 -4.30341 -0.11388 0.25291 0.63184 2.39638 3.07927 3.17231 3.25492 3.27368 3.28814 3.34730 3.55416 3.90675 3.92774 4.09543 4.26795 4.57450 4.67467 4.89078 5.06081 5.09792 5.15845 5.53124 6.10927 6.15019 6.34638 6.47861 6.55624 6.96880 7.20096 7.34241 7.43697 7.58637 7.65484 7.95670 8.16200 8.72237 9.35936 10.83425 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.005739 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.429434 B = 4877.389303 C = 5456.813775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.275 3.725 4 H 0.040 0.960 5 C -0.526 4.526 6 H 0.066 0.934 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 N -1.085 6.085 14 S 2.684 3.316 15 O -0.957 6.957 16 O -0.934 6.934 17 C -0.707 4.707 18 C 0.201 3.799 19 F -0.078 7.078 20 C 0.069 3.931 21 F -0.110 7.110 22 C -0.086 4.086 23 C 0.064 3.936 24 F -0.113 7.113 25 C 0.193 3.807 26 F -0.088 7.088 27 H 0.031 0.969 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.102 0.898 32 H 0.265 0.735 33 H 0.415 0.585 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 6.982 7.266 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.058 0.942 5 C -0.565 4.565 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.849 5.849 14 S 2.765 3.235 15 O -0.946 6.946 16 O -0.924 6.924 17 C -0.788 4.788 18 C 0.179 3.821 19 F -0.056 7.056 20 C 0.048 3.952 21 F -0.088 7.088 22 C -0.105 4.105 23 C 0.043 3.957 24 F -0.091 7.091 25 C 0.171 3.829 26 F -0.066 7.066 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.778 6.448 7.930 11.741 hybrid contribution -0.068 1.090 -1.514 1.867 sum 5.710 7.538 6.416 11.428 Atomic orbital electron populations 1.21576 0.97640 0.98972 1.00693 1.21946 0.95015 0.98493 1.01985 1.18698 0.93785 0.89111 0.81268 0.94226 1.21248 1.33013 1.12524 0.89739 0.91574 1.24886 0.94789 0.94894 0.99020 1.69865 1.35323 1.21998 1.24744 0.86474 0.78634 0.79669 0.82883 1.19645 1.20957 1.20761 1.55580 1.27662 1.69684 1.31958 1.02632 0.73059 0.74075 0.73745 1.93599 1.68107 1.72978 1.59952 1.93648 1.80917 1.34390 1.83413 1.31412 1.21069 1.06995 1.19334 1.16652 0.91699 0.78983 0.94744 1.91793 1.96157 1.26169 1.91475 1.17147 0.83805 0.90502 1.03738 1.91613 1.47504 1.83890 1.85771 1.21034 0.98653 0.93088 0.97766 1.17088 0.94092 0.78397 1.06118 1.91595 1.96631 1.27469 1.93420 1.16558 0.83088 0.88582 0.94693 1.91728 1.47172 1.83391 1.84317 0.95025 0.95370 0.91865 0.94763 0.88022 0.92476 0.75011 0.80691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.51 37.16 0.35 -2.29 16 2 C -0.13 -3.05 5.69 -26.73 -0.15 -3.20 16 3 C 0.28 6.21 2.46 -69.08 -0.17 6.04 16 4 H 0.04 0.95 6.51 -51.93 -0.34 0.61 16 5 C -0.53 -12.69 7.50 -34.45 -0.26 -12.95 16 6 H 0.07 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.88 -22.94 11.31 55.43 0.63 -22.31 16 9 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -1.09 -20.79 4.75 -5.88 -0.03 -20.82 16 14 S 2.68 49.30 5.53 -107.50 -0.59 48.70 16 15 O -0.96 -18.12 16.20 -57.17 -0.93 -19.05 16 16 O -0.93 -19.06 15.59 -57.17 -0.89 -19.95 16 17 C -0.71 -11.72 5.85 -39.47 -0.23 -11.95 16 18 C 0.20 3.30 6.78 -39.38 -0.27 3.03 16 19 F -0.08 -1.46 14.37 2.25 0.03 -1.42 16 20 C 0.07 0.94 7.30 -39.38 -0.29 0.65 16 21 F -0.11 -1.49 17.18 2.25 0.04 -1.45 16 22 C -0.09 -0.93 10.00 -39.47 -0.39 -1.33 16 23 C 0.06 0.81 7.30 -39.38 -0.29 0.52 16 24 F -0.11 -1.36 17.18 2.25 0.04 -1.32 16 25 C 0.19 2.90 7.21 -39.38 -0.28 2.62 16 26 F -0.09 -1.40 15.25 2.25 0.03 -1.37 16 27 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.33 7.12 -51.93 -0.37 0.96 16 30 H 0.03 0.76 7.79 -51.93 -0.40 0.35 16 31 H 0.10 2.53 6.03 -51.93 -0.31 2.22 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 33 H 0.41 7.16 8.69 -34.47 -0.30 6.86 16 34 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -28.02 319.19 -6.46 -34.49 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.51 Total: 2.36 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.07 Total: -17.27 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.60 Total: -43.13 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.82 Total: -39.00 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.14 Total: -5.56 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -0.59 Total: 48.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.02 -6.46 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193832631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.059 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds