Wall clock time and date at job start Sat Apr 11 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 H 1.09005 * 109.46842 * 178.46449 * 3 2 1 5 5 C 1.50690 * 109.47336 * 298.46415 * 3 2 1 6 6 H 1.08007 * 119.99944 * 119.99935 * 5 3 2 7 7 C 1.37873 * 120.00267 * 300.00061 * 5 3 2 8 8 N 1.31510 * 120.00163 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00156 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47153 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46910 * 120.00229 * 9 7 5 12 12 H 1.48502 * 109.47112 * 240.00062 * 9 7 5 13 13 N 1.46505 * 109.46975 * 58.46708 * 3 2 1 14 14 S 1.65599 * 119.99676 * 96.16958 * 13 3 2 15 15 O 1.42106 * 106.39644 * 178.78599 * 14 13 3 16 16 O 1.42097 * 106.40595 * 311.70243 * 14 13 3 17 17 C 1.76196 * 107.22029 * 65.24970 * 14 13 3 18 18 C 1.38388 * 119.99964 * 269.72157 * 17 14 13 19 19 F 1.35100 * 119.99873 * 359.97438 * 18 17 14 20 20 C 1.38639 * 120.00248 * 179.79369 * 18 17 14 21 21 F 1.35101 * 120.00245 * 180.25274 * 20 18 17 22 22 C 1.38394 * 119.99926 * 0.45645 * 20 18 17 23 23 C 1.38387 * 119.99741 * 359.79677 * 22 20 18 24 24 F 1.35101 * 119.99712 * 179.97438 * 23 22 20 25 25 C 1.38393 * 120.00308 * 89.99745 * 17 14 13 26 26 F 1.35101 * 119.99886 * 359.95050 * 25 17 14 27 27 H 1.09006 * 109.47105 * 295.74026 * 1 2 3 28 28 H 1.08993 * 109.47223 * 175.74324 * 1 2 3 29 29 H 1.09001 * 109.47676 * 55.73609 * 1 2 3 30 30 H 1.08998 * 109.46951 * 120.00171 * 2 1 3 31 31 H 1.08994 * 109.47191 * 240.00495 * 2 1 3 32 32 H 0.96997 * 120.00864 * 179.97438 * 8 7 5 33 33 H 0.96995 * 119.99755 * 276.16929 * 13 3 2 34 34 H 1.08001 * 119.99958 * 179.76825 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1296 1.4427 0.0275 5 6 1.5690 2.1419 -1.2490 6 1 0.9458 3.0208 -1.1734 7 6 1.9335 1.6598 -2.4882 8 7 2.6919 0.5893 -2.5802 9 14 1.3491 2.5263 -4.0364 10 1 0.5144 3.6965 -3.6636 11 1 2.5239 2.9862 -4.8197 12 1 0.5449 1.5852 -4.8568 13 7 1.5216 2.1437 1.1773 14 16 2.4483 2.2630 2.5446 15 8 1.6869 3.0131 3.4810 16 8 2.9399 0.9567 2.8113 17 6 3.8509 3.2495 2.1397 18 6 5.0045 2.6504 1.6649 19 9 5.0553 1.3090 1.5123 20 6 6.1067 3.4270 1.3422 21 9 7.2311 2.8426 0.8739 22 6 6.0565 4.8006 1.5039 23 6 4.9047 5.3992 1.9836 24 9 4.8560 6.7400 2.1419 25 6 3.8009 4.6230 2.3018 26 9 2.6763 5.2075 2.7697 27 1 -0.3633 0.4463 0.9257 28 1 -0.3633 -1.0248 -0.0763 29 1 -0.3634 0.5786 -0.8493 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 2.9481 0.2499 -3.4520 33 1 0.6357 2.5381 1.1559 34 1 6.9164 5.4052 1.2561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193832631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:57 Heat of formation + Delta-G solvation = -236.306056 kcal Electronic energy + Delta-G solvation = -29162.732545 eV Core-core repulsion = 24301.741167 eV Total energy + Delta-G solvation = -4860.991378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.02453 -50.95652 -50.03527 -50.01643 -39.91738 -38.50690 -37.82164 -37.10707 -34.16184 -32.73083 -32.09995 -31.23971 -28.31126 -25.83298 -25.43239 -24.48996 -21.93866 -21.03207 -20.05063 -19.82618 -19.52476 -19.12215 -18.35241 -17.88748 -17.84536 -17.62037 -17.27782 -17.15042 -16.86683 -16.48659 -16.26928 -16.22566 -16.09841 -15.68774 -15.40612 -14.98935 -14.73838 -14.58198 -14.11594 -13.98477 -13.61412 -13.51510 -13.34938 -13.23408 -13.13038 -12.85036 -12.67163 -12.48465 -12.38109 -12.15998 -11.86728 -11.51720 -11.07911 -10.98654 -10.56449 -10.12742 -10.02341 -8.10735 -6.24516 -1.26114 -0.88137 -0.80943 1.28886 1.44019 1.48790 1.57299 1.85253 1.96680 2.15061 2.41688 2.45660 2.49935 2.73140 3.02259 3.18987 3.35420 3.59390 3.67893 3.83498 4.24974 4.38274 4.40308 4.67137 4.78279 4.84490 5.05944 5.24235 5.46442 5.54437 5.71247 5.72116 6.03666 6.10160 6.37958 6.84534 7.44298 8.93936 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.005739 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.429434 B = 4877.389303 C = 5456.813775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C 0.280 3.720 4 H 0.022 0.978 5 C -0.529 4.529 6 H 0.070 0.930 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.283 1.283 13 N -1.086 6.086 14 S 2.700 3.300 15 O -0.964 6.964 16 O -0.961 6.961 17 C -0.720 4.720 18 C 0.175 3.825 19 F -0.101 7.101 20 C 0.074 3.926 21 F -0.108 7.108 22 C -0.050 4.050 23 C 0.080 3.920 24 F -0.103 7.103 25 C 0.182 3.818 26 F -0.096 7.096 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.422 0.578 34 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 9.146 7.037 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.176 4.176 3 C 0.175 3.825 4 H 0.040 0.960 5 C -0.568 4.568 6 H 0.088 0.912 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.849 5.849 14 S 2.784 3.216 15 O -0.954 6.954 16 O -0.951 6.951 17 C -0.804 4.804 18 C 0.153 3.847 19 F -0.078 7.078 20 C 0.053 3.947 21 F -0.086 7.086 22 C -0.069 4.069 23 C 0.058 3.942 24 F -0.081 7.081 25 C 0.159 3.841 26 F -0.074 7.074 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.259 0.741 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.334 8.607 7.720 13.183 hybrid contribution -0.168 0.500 -1.388 1.485 sum 6.165 9.107 6.333 12.690 Atomic orbital electron populations 1.21509 0.95694 0.99979 1.01138 1.21889 0.96805 0.98379 1.00495 1.18427 0.92855 0.89245 0.81934 0.95990 1.21494 1.32532 1.12468 0.90336 0.91160 1.25546 0.95021 0.95445 1.01548 1.69990 1.36486 1.23229 1.25143 0.85599 0.78046 0.78793 0.79762 1.18904 1.21048 1.20937 1.55381 1.28539 1.69898 1.31110 1.01846 0.73024 0.73594 0.73178 1.93585 1.68811 1.72989 1.60005 1.93612 1.81346 1.36328 1.83778 1.30929 1.20439 1.07537 1.21504 1.16983 0.92955 0.78452 0.96350 1.91731 1.96340 1.27842 1.91931 1.17199 0.82969 0.91197 1.03347 1.91624 1.47180 1.84107 1.85701 1.21459 0.99178 0.91917 0.94327 1.17031 0.93535 0.78532 1.05064 1.91634 1.96547 1.26738 1.93226 1.16731 0.83753 0.88294 0.95272 1.91706 1.47812 1.83332 1.84538 0.93282 0.93914 0.92828 0.95201 0.90528 0.92622 0.74102 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.51 71.98 0.68 -4.33 16 2 C -0.14 -6.26 5.69 30.59 0.17 -6.09 16 3 C 0.28 12.82 2.46 44.24 0.11 12.93 16 4 H 0.02 1.10 6.51 -2.38 -0.02 1.08 16 5 C -0.53 -25.47 7.50 25.60 0.19 -25.28 16 6 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 7 C 0.03 1.26 5.30 84.65 0.45 1.70 16 8 N -0.91 -48.01 11.31 21.44 0.24 -47.76 16 9 Si 0.95 39.86 29.54 68.60 2.03 41.89 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 13 N -1.09 -41.84 4.75 -172.51 -0.82 -42.66 16 14 S 2.70 100.31 5.53 -56.49 -0.31 100.00 16 15 O -0.96 -36.45 16.20 -128.00 -2.07 -38.52 16 16 O -0.96 -40.36 15.59 -128.00 -2.00 -42.36 16 17 C -0.72 -23.66 5.85 22.34 0.13 -23.53 16 18 C 0.17 5.68 6.78 22.40 0.15 5.83 16 19 F -0.10 -3.87 14.37 44.97 0.65 -3.22 16 20 C 0.07 1.86 7.30 22.40 0.16 2.02 16 21 F -0.11 -2.71 17.18 44.97 0.77 -1.94 16 22 C -0.05 -0.88 10.00 22.34 0.22 -0.66 16 23 C 0.08 1.75 7.30 22.40 0.16 1.91 16 24 F -0.10 -2.10 17.18 44.97 0.77 -1.33 16 25 C 0.18 5.20 7.21 22.40 0.16 5.37 16 26 F -0.10 -2.94 15.25 44.97 0.69 -2.25 16 27 H 0.05 1.75 7.59 -2.38 -0.02 1.73 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 2.22 7.12 -2.39 -0.02 2.20 16 30 H 0.03 1.36 7.79 -2.39 -0.02 1.34 16 31 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 32 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 33 H 0.42 14.49 8.69 -96.75 -0.84 13.65 16 34 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -60.52 319.19 2.91 -57.61 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.36 Total: 10.67 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 2.60 Total: -30.12 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -0.58 Total: -90.43 kcal Atomic # 8 Polarization: -76.81 SS G_CDS: -4.07 Total: -80.88 kcal Atomic # 9 Polarization: -11.62 SS G_CDS: 2.88 Total: -8.74 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 16 Polarization: 100.31 SS G_CDS: -0.31 Total: 100.00 kcal Total: -60.52 2.91 -57.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193832631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.696 kcal (2) G-P(sol) polarization free energy of solvation -60.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds